Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023178.1

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Reverse (-)

15152 .. 15630

Gene Structure 479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023178.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaagcatgttgaaatgggtaccgatctcattaatcatttgactccagaggagaagtatcttctctcaagattgaaccctgaaatagcatatcttaaagtgaagcttattacatgcaaggcagatcgaactgaagtaagctcaagaaaggcaaagcttgagactaatttaactacgaaccttaggaggcgaaagcaagaactagaggcaataatatcttccgtggaaactgataatttgcatggtgaagatgaaataaagattcaggaactgaatcatgatgctagattattggttgaagatgcaacagagcagctcagaagtgaggccaatgatttgccattttttgaagttgttttcatgctcctgtttgttaacatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

127

Amino Acids

14.73

Weight (kDa)

5.25

Isoelectric Point (pI)

50.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	14, 76, 299, 350
AluBI	AGCT	4 cut(s)	106, 141, 157, 316
AluI	AGCT	4 cut(s)	106, 141, 157, 316
Alw26I	GTCTC	1 cut(s)	155
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	313
AseI	ATTAAT	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	257
AxyI	CCTNAGG	1 cut(s)	182
BanI	GGYRCC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	203, 285
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	2 cut(s)	271, 292
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	3 cut(s)	52, 127, 179
BsaJI	CCNNGG	1 cut(s)	222
Bse21I	CCTNAGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	25, 124
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	2 cut(s)	25, 124
BstDEI	CTNAG	2 cut(s)	182, 317
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	28, 127
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	25, 124
BstNSI	RCATGY	2 cut(s)	11, 117
BstV1I	GCAGC	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	271
CciI	TCATGA	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	5 cut(s)	8, 114, 242, 278, 361
CviJI	RGCY	5 cut(s)	106, 141, 157, 316, 329
CviKI_1	RGCY	5 cut(s)	106, 141, 157, 316, 329
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	182, 317
DpnI	GATC	2 cut(s)	27, 126
DpnII	GATC	2 cut(s)	25, 124
Eco57I	CTGAAG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	182
FaeI	CATG	5 cut(s)	11, 117, 245, 281, 364
FaiI	YATR	8 cut(s)	9, 91, 115, 243, 279, 362, 380, 382
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	5 cut(s)	7, 113, 241, 277, 360
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	2 cut(s)	203, 285
GluI	GCNGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	11, 117, 245, 281, 364
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	2 cut(s)	104, 155
HinfI	GANTC	3 cut(s)	43, 262, 274
HpaI	GTTAAC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	5 cut(s)	47, 69, 144, 266, 278
Hpy8I	GTNNAC	1 cut(s)	376
HpyCH4V	TGCA	3 cut(s)	117, 241, 305
HpyF3I	CTNAG	2 cut(s)	182, 317
Hsp92II	CATG	5 cut(s)	11, 117, 245, 281, 364
KpnI	GGTACC	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	25, 124
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	4 cut(s)	60, 93, 251, 380
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	2 cut(s)	271, 292
MaeI	CTAG	2 cut(s)	203, 285
MalI	GATC	2 cut(s)	27, 126
MboI	GATC	2 cut(s)	25, 124
MboII	GAAGA	4 cut(s)	53, 210, 260, 311
MluCI	AATT	2 cut(s)	166, 235
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	43, 180, 199, 319
MseI	TTAA	4 cut(s)	33, 96, 170, 375
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	2 cut(s)	25, 124
NlaIII	CATG	5 cut(s)	11, 117, 245, 281, 364
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	11, 117
PagI	TCATGA	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	262, 274
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	33, 96, 170, 375
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	2 cut(s)	25, 124
SchI	GAGTC	1 cut(s)	37
SetI	ASST	5 cut(s)	108, 143, 159, 183, 318
SfaNI	GCATC	2 cut(s)	271, 292
SmlI	CTYRAG	3 cut(s)	67, 142, 158
SmoI	CTYRAG	3 cut(s)	67, 142, 158
Sse9I	AATT	2 cut(s)	166, 235
SspMI	CTAG	2 cut(s)	203, 285
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	166, 235
TfiI	GAWTC	2 cut(s)	262, 274
Tru1I	TTAA	4 cut(s)	33, 96, 170, 375
Tru9I	TTAA	4 cut(s)	33, 96, 170, 375
TseI	GCWGC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	17, 267, 349
TspGWI	ACGGA	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	33
XceI	RCATGY	2 cut(s)	11, 117
XspI	CTAG	2 cut(s)	203, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.