Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Reverse (-)

952425 .. 952899

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026173

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGCATGTTGAAATGGGTACCGATCTCATTGATCGTTTGACTCCAGAGGAGAAGGATCTTCTCTCAAGATTGAACCCTGAAATAGCAGATCTTAAAGAGAAGCTTATTACATGCAAGGCGGATCGAACTGAGATTGAAGCAAGAAAGGCAGAGCTTGAGACTAATTTAACTACGAACCTTAAGAGGCGAAAGCAAGAACTAGAGGCAATAATATCTTCCGTGGAAACTGATAATTTGCATGGTGAAGATGAAATAAAGATTCAGGAACTGAATGATGCTAGATTATTGGTTGAAGATGCAACAGAGCAACTCAGAAGTGAGGCCAATGATTTGCCATTTTTTAAAGTTGTTTTCATGCTCCTGTTTGTTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000793 GO:0000819 GO:0003674 GO:0003682 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005856 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0008150 GO:0008152 GO:0008278 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010468 GO:0015630 GO:0016043 GO:0016301 GO:0016310 GO:0016363 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0022402 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034399 GO:0036211 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051276 GO:0055044 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0098813 GO:0140096 GO:1900368 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 map04110 map04111 map04113 map04114

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

127

Amino Acids

14.56

Weight (kDa)

4.72

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	20
AccB1I	GGYRCC	1 cut(s)	20
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	66, 132
AfaI	GTAC	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	4 cut(s)	14, 76, 140, 296
AluBI	AGCT	2 cut(s)	106, 157
AluI	AGCT	2 cut(s)	106, 157
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	66, 132
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	203, 282
BfrI	CTTAAG	1 cut(s)	182
BglII	AGATCT	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	22
BmsI	GCATC	2 cut(s)	268, 289
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	52, 179
BsaJI	CCNNGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	222
BseMII	CTCAG	2 cut(s)	123, 328
BseRI	GAGGAG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	326
Bsp143I	GATC	5 cut(s)	25, 34, 58, 91, 124
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	124, 327
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	2 cut(s)	66, 132
BspT107I	GGYRCC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	5 cut(s)	25, 34, 58, 91, 124
BstAFI	CTTAAG	1 cut(s)	182
BstDEI	CTNAG	2 cut(s)	132, 314
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	5 cut(s)	28, 37, 61, 94, 127
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	5 cut(s)	25, 34, 58, 91, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	2 cut(s)	11, 117
BstX2I	RGATCY	2 cut(s)	58, 91
BstYI	RGATCY	2 cut(s)	58, 91
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	8, 114, 242, 358
CviJI	RGCY	3 cut(s)	106, 157, 326
CviKI_1	RGCY	3 cut(s)	106, 157, 326
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	132, 314
DpnI	GATC	5 cut(s)	27, 36, 60, 93, 126
DpnII	GATC	5 cut(s)	25, 34, 58, 91, 124
DraI	TTTAAA	1 cut(s)	346
EciI	GGCGGA	1 cut(s)	137
FaeI	CATG	4 cut(s)	11, 117, 245, 361
FaiI	YATR	6 cut(s)	9, 115, 243, 359, 377, 379
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	4 cut(s)	7, 113, 241, 357
FauNDI	CATATG	1 cut(s)	377
FspBI	CTAG	2 cut(s)	203, 282
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	11, 117, 245, 361
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	43, 262
HpaI	GTTAAC	1 cut(s)	373
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	47, 69, 266
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	117, 241, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	2 cut(s)	132, 314
Hsp92II	CATG	4 cut(s)	11, 117, 245, 361
KpnI	GGTACC	1 cut(s)	24
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	5 cut(s)	25, 34, 58, 91, 124
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	4 cut(s)	60, 93, 251, 377
LweI	GCATC	2 cut(s)	268, 289
MaeI	CTAG	2 cut(s)	203, 282
MalI	GATC	5 cut(s)	27, 36, 60, 93, 126
MboI	GATC	5 cut(s)	25, 34, 58, 91, 124
MboII	GAAGA	4 cut(s)	53, 210, 260, 308
MflI	RGATCY	2 cut(s)	58, 91
MluCI	AATT	2 cut(s)	166, 235
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	4 cut(s)	43, 180, 199, 316
MseI	TTAA	5 cut(s)	96, 170, 183, 345, 372
MspCI	CTTAAG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeI	CATATG	1 cut(s)	377
NdeII	GATC	5 cut(s)	25, 34, 58, 91, 124
NlaIII	CATG	4 cut(s)	11, 117, 245, 361
NlaIV	GGNNCC	1 cut(s)	22
NspI	RCATGY	2 cut(s)	11, 117
PfeI	GAWTC	1 cut(s)	262
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	22
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	58, 91
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	96, 170, 183, 345, 372
Sau3AI	GATC	5 cut(s)	25, 34, 58, 91, 124
SchI	GAGTC	1 cut(s)	37
SetI	ASST	3 cut(s)	108, 159, 183
SfaNI	GCATC	2 cut(s)	268, 289
SmlI	CTYRAG	3 cut(s)	67, 158, 182
SmoI	CTYRAG	3 cut(s)	67, 158, 182
Sse9I	AATT	2 cut(s)	166, 235
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	203, 282
TaqI	TCGA	1 cut(s)	127
TasI	AATT	2 cut(s)	166, 235
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	5 cut(s)	96, 170, 183, 345, 372
Tru9I	TTAA	5 cut(s)	96, 170, 183, 345, 372
TspDTI	ATGAA	3 cut(s)	17, 267, 346
TspGWI	ACGGA	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	182
XceI	RCATGY	2 cut(s)	11, 117
XspI	CTAG	2 cut(s)	203, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.