Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010628

Physical Location & Seq

Genomic Coordinates Forward (+)

58278489 .. 58278904

Gene Structure 416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCAACCCTTGAGGAAATCCTAACACGCCACCCAGTCGCTGCGGCTATCCACCTCCCTCGACCCGCCTCACCCGACATGCACCGCCGGTGTCCGGATTTAGGTCAGTCCCGCCTCAACCTAATGGCCTTCTGCAAAGACTTCAATGCCCAACTGACCATTACAGTGTTCAAGGACAACACTTTCGAATTCACCGTCAAGTCGCCGCCGGTGACGTGGTATTTGAAGAAGGCGGCGGGGATTGAGTCCGAGAGAGGCTGGCCGGGGCACGCGGTGGGGTCGACGCTGTATCGGATTATTCGGACGGTGAACACGGTGGGGATTCAATTGGTGAAGGACTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0032543 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:0098798 GO:0140053 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L11 Ribosomal_L11_N

Protein Analysis

115

Amino Acids

12.92

Weight (kDa)

9.1

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010628)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0277301
rosa_laevigata	RLG00000026173
rosa_multiflora	Rmu_sc0008593.1_g000009 Rmu_sc0018616.1_g000001 Rmu_sc0023178.1_g000003 Rmu_sc0025236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00181640
rosa_rugosa	Rorug05G0303600
rosa_samantha	Rh1DG008300 Rh1DG008400 Rh3AG080900 Rh3BG082900 Rh3CG083100 Rh3CG246200 Rh3DG084400 Rh4CG246000 Rh5BG334400 Rh5DG346500
rosa_wichuraiana	Rw0G017380 Rw1G000720 Rw7G038260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	8 cut(s)	44, 66, 85, 112, 206, 233, 236, 272
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	94, 101
AgsI	TTSAA	4 cut(s)	145, 172, 226, 326
AjiI	CACGTC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	41
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	2 cut(s)	126, 260
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	6 cut(s)	167, 180, 199, 205, 212, 237
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	5 cut(s)	63, 184, 223, 319, 343
AsuII	TTCGAA	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	264
BisI	GCNGC	4 cut(s)	42, 45, 206, 234
BlsI	GCNGC	4 cut(s)	43, 46, 207, 235
Bme1390I	CCNGG	1 cut(s)	264
BmgBI	CACGTC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	264
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
Bpu14I	TTCGAA	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	263
BsaWI	WCCGGW	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 101
Bse118I	RCCGGY	2 cut(s)	87, 208
Bse1I	ACTGG	1 cut(s)	35
BseAI	TCCGGA	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	94, 101
BseNI	ACTGG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	128, 262
BsiSI	CCGG	4 cut(s)	88, 95, 209, 263
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	94, 101
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	128, 262
Bsp119I	TTCGAA	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	94
BspACI	CCGC	8 cut(s)	44, 66, 85, 112, 206, 233, 236, 272
BspANI	GGCC	2 cut(s)	128, 262
BspEI	TCCGGA	1 cut(s)	94
BspFNI	CGCG	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	186
BsrFI	RCCGGY	2 cut(s)	87, 208
BsrI	ACTGG	1 cut(s)	35
BssAI	RCCGGY	2 cut(s)	87, 208
BssECI	CCNNGG	1 cut(s)	263
Bst4CI	ACNGT	4 cut(s)	166, 196, 307, 316
BstBI	TTCGAA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	260, 270
BstFNI	CGCG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	128, 262
BtrI	CACGTC	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	2 cut(s)	260, 270
CaiI	CAGNNNCTG	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	87, 208
CseI	GACGC	1 cut(s)	292
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	4 cut(s)	47, 128, 258, 262
CviKI_1	RGCY	4 cut(s)	47, 128, 258, 262
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	188
FaeI	CATG	1 cut(s)	82
FaiI	YATR	1 cut(s)	80
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	78
FauI	CCCGC	3 cut(s)	73, 119, 229
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	42, 45, 206, 234
Fsp4HI	GCNGC	4 cut(s)	42, 45, 206, 234
GluI	GCNGC	4 cut(s)	42, 45, 206, 234
HaeIII	GGCC	2 cut(s)	128, 262
HapII	CCGG	4 cut(s)	88, 95, 209, 263
HgaI	GACGC	1 cut(s)	292
Hin1II	CATG	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	245, 322
HpaII	CCGG	4 cut(s)	88, 95, 209, 263
HphI	GGTGA	5 cut(s)	63, 184, 223, 319, 343
Hpy166II	GTNNAC	2 cut(s)	282, 310
Hpy188I	TCNGA	3 cut(s)	250, 294, 303
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	282, 310
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	3 cut(s)	139, 223, 328
HpyCH4III	ACNGT	4 cut(s)	166, 196, 307, 316
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	82, 135
HpySE526I	ACGT	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	94
LpnPI	CCDG	6 cut(s)	48, 101, 108, 222, 244, 276
Lsp1109I	GCAGC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	211
MboII	GAAGA	1 cut(s)	238
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	188, 326
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	6 cut(s)	7, 65, 69, 79, 125, 248
MroI	TCCGGA	1 cut(s)	94
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	4 cut(s)	88, 95, 209, 263
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	272
NciI	CCSGG	1 cut(s)	264
NlaIII	CATG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	82
NspV	TTCGAA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	43, 46, 207, 235
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	41
RseI	CAYNNNNRTG	1 cut(s)	164
SalI	GTCGAC	1 cut(s)	280
SatI	GCNGC	4 cut(s)	42, 45, 206, 234
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	4 cut(s)	57, 106, 123, 218
SfuI	TTCGAA	1 cut(s)	186
SgrAI	CRCCGGYG	2 cut(s)	87, 208
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	188, 326
SsiI	CCGC	8 cut(s)	44, 66, 85, 112, 206, 233, 236, 272
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	4 cut(s)	166, 196, 307, 316
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	3 cut(s)	61, 186, 281
TasI	AATT	2 cut(s)	188, 326
TauI	GCSGC	3 cut(s)	47, 208, 236
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.