Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

40193054 .. 40193999

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24911

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTTTATTTATTGTGAATATACTTGGTGCTTTTGTTGTTGATTTACTTTCTATTGTTTGCTTTGTTGAAGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAGTGGAGCAAAGTAGGAAAGAAACCATACCCAGCCATGTATTCCAGCATTTATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGATACCTGTATGAGCTGGATGTCCATCTAAACCGCTTCCTCAGATCAGCTTCAAAAGCAAGGATCCCCTCTCCCTTTGATCGGTCAACTCTTCGGAGCATTAATTCTTGTGCAACTGGCGGCAGGGTCACAGATCAAGAAAGGAACTCTAAGATATTGGATGAGTGCCGGTCCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

162

Amino Acids

18.32

Weight (kDa)

6.29

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	343, 429
AclWI	GGATC	3 cut(s)	221, 367, 380
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	71, 121, 143, 363
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	4 cut(s)	148, 233, 325, 359
AluI	AGCT	4 cut(s)	148, 233, 325, 359
AlwI	GGATC	3 cut(s)	221, 367, 380
AoxI	GGCC	1 cut(s)	274
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	480
BamHI	GGATCC	1 cut(s)	372
BccI	CCATC	2 cut(s)	232, 342
BciT130I	CCWGG	1 cut(s)	484
BciVI	GTATCC	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	430
BlsI	GCNGC	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	484
Bme18I	GGWCC	1 cut(s)	480
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	484
BsaBI	GATNNNNATC	1 cut(s)	333
BsaJI	CCNNGG	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse118I	RCCGGY	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	334, 475
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	123, 364
BseNI	ACTGG	1 cut(s)	430
BseYI	CCCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	390
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	343, 429
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	2 cut(s)	124, 363
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	221, 367, 380
BsrFI	RCCGGY	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	132, 350, 459
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	334, 475
BstKTI	GATC	6 cut(s)	229, 259, 356, 375, 391, 445
BstMBI	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 365
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	334, 475
CciI	TCATGA	1 cut(s)	151
Cfr10I	RCCGGY	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	480
CviAII	CATG	5 cut(s)	113, 152, 193, 262, 278
CviJI	RGCY	7 cut(s)	148, 191, 233, 276, 296, 325, 359
CviKI_1	RGCY	7 cut(s)	148, 191, 233, 276, 296, 325, 359
DdeI	CTNAG	3 cut(s)	132, 350, 459
DpnI	GATC	6 cut(s)	228, 258, 355, 374, 390, 444
DpnII	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	5 cut(s)	116, 155, 196, 265, 281
FaiI	YATR	9 cut(s)	23, 114, 153, 184, 194, 210, 263, 279, 321
FatI	CATG	5 cut(s)	112, 151, 192, 261, 277
Fnu4HI	GCNGC	1 cut(s)	430
FokI	GGATG	2 cut(s)	341, 482
Fsp4HI	GCNGC	1 cut(s)	430
GluI	GCNGC	1 cut(s)	430
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	478
Hin1II	CATG	5 cut(s)	116, 155, 196, 265, 281
HincII	GTYRAC	1 cut(s)	396
HindII	GTYRAC	1 cut(s)	396
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	74, 216, 244
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	3 cut(s)	133, 353, 405
Hpy188III	TCNNGA	3 cut(s)	152, 224, 446
Hpy8I	GTNNAC	1 cut(s)	396
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 365
HpyF3I	CTNAG	3 cut(s)	132, 350, 459
Hsp92II	CATG	5 cut(s)	116, 155, 196, 265, 281
Kzo9I	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
LmnI	GCTCC	2 cut(s)	162, 405
LpnPI	CCDG	8 cut(s)	201, 214, 243, 311, 329, 411, 418, 469
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	6 cut(s)	228, 258, 355, 374, 390, 444
MboI	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
MboII	GAAGA	2 cut(s)	83, 392
MflI	RGATCY	1 cut(s)	372
MluCI	AATT	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	5 cut(s)	76, 91, 266, 359, 388
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	3 cut(s)	105, 305, 411
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	145, 365
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
NlaIII	CATG	5 cut(s)	116, 155, 196, 265, 281
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	436
PagI	TCATGA	1 cut(s)	151
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	74, 216, 244
PkrI	GCNGC	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	482
PspFI	CCCAGC	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	105, 305, 411
SatI	GCNGC	1 cut(s)	430
Sau3AI	GATC	6 cut(s)	226, 256, 353, 372, 388, 442
Sau96I	GGNCC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	484
SetI	ASST	7 cut(s)	87, 111, 150, 235, 318, 327, 361
SinI	GGWCC	1 cut(s)	480
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	343, 429
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	2 cut(s)	96, 271
TaqII	GACCGA	1 cut(s)	381
TasI	AATT	1 cut(s)	412
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	74, 216, 244
Tru1I	TTAA	3 cut(s)	105, 305, 411
Tru9I	TTAA	3 cut(s)	105, 305, 411
TseFI	GTSAC	1 cut(s)	436
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	4 cut(s)	66, 101, 140, 257
VpaK11BI	GGWCC	1 cut(s)	480
VspI	ATTAAT	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.