RLG00000029960

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014847
Physical Location & Seq
Forward (+)
52212879 .. 52214815
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029960

Sequence Viewer

Length: 405 bp
ATGAGAAGTGGATATGTCGACTGCAAAACAGTAACGGGTTGCTCCATCCAAGCCGCAGCAGCATCAATTAAAGCTTCGACTCACTGCCGCGATGACGTCGTACGACGCCCTACCGCCATCACCGATTACCGCAAGAGGTTACTTCAGCACAAGGAGGTCAAATCCAGAGTTCGCGGAAGTCAGATTCGCACTCTAAATATCCACCTTATTCATGTTCGATTCTACATCTGCAACCGGAGAGTGTCTCTCTCACCATCGGCGAACCAGCTCACAAGCAATTTGAAAGTCCAGAGAGCTTCATGTGCGCCTGAAGAGTTGAGATCTTATCACGACGATTCAGCTCTCGCAGGATCGAAAGCAATATATAAATTCAAAGGTCTGAGTGGTGGTGCTGGTGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

135

Amino Acids

14.76

Weight (kDa)

10.14

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AccI GTMKAC 1 cut(s) 18
AccII CGCG 2 cut(s) 90, 174
AciI CCGC 5 cut(s) 54, 88, 114, 130, 174
AclWI GGATC 1 cut(s) 358
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 128, 330
AcyI GRCGYC 2 cut(s) 96, 106
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 2 cut(s) 283, 373
AluBI AGCT 4 cut(s) 74, 268, 296, 341
AluI AGCT 4 cut(s) 74, 268, 296, 341
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 56, 59
ApoI RAATTY 1 cut(s) 368
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 112, 243
BbvI GCAGC 2 cut(s) 68, 71
BccI CCATC 3 cut(s) 53, 125, 262
BcoDI GTCTC 1 cut(s) 249
BglII AGATCT 1 cut(s) 320
BisI GCNGC 4 cut(s) 54, 57, 60, 88
BlsI GCNGC 4 cut(s) 55, 58, 61, 89
BmsI GCATC 1 cut(s) 71
BplI GAGNNNNNCTC 4 cut(s) 229, 261, 231, 263
BsaHI GRCGYC 2 cut(s) 96, 106
BsaWI WCCGGW 1 cut(s) 234
BseGI GGATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 68, 71
Bsh1236I CGCG 2 cut(s) 90, 174
BsiSI CCGG 1 cut(s) 235
BsiWI CGTACG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 320, 350
BspACI CCGC 5 cut(s) 54, 88, 114, 130, 174
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 2 cut(s) 90, 174
BspPI GGATC 1 cut(s) 358
BssMI GATC 2 cut(s) 320, 350
BssNI GRCGYC 2 cut(s) 96, 106
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 306
BstACI GRCGYC 2 cut(s) 96, 106
BstDEI CTNAG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 90, 174
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 2 cut(s) 323, 353
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 2 cut(s) 320, 350
BstMWI GCNNNNNNNGC 2 cut(s) 59, 302
BstUI CGCG 2 cut(s) 90, 174
BstV1I GCAGC 2 cut(s) 68, 71
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
CfoI GCGC 1 cut(s) 307
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 101
CviAII CATG 2 cut(s) 212, 300
CviJI RGCY 5 cut(s) 53, 74, 268, 296, 341
CviKI_1 RGCY 5 cut(s) 53, 74, 268, 296, 341
CviQI GTAC 1 cut(s) 101
DdeI CTNAG 1 cut(s) 380
DpnI GATC 2 cut(s) 322, 352
DpnII GATC 2 cut(s) 320, 350
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 128, 330
FaeI CATG 2 cut(s) 215, 303
FaiI YATR 6 cut(s) 15, 213, 301, 364, 366, 403
FatI CATG 2 cut(s) 211, 299
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 54, 57, 60, 88
FokI GGATG 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 54, 57, 60, 88
GlaI GCGC 1 cut(s) 306
GluI GCNGC 4 cut(s) 54, 57, 60, 88
HapII CCGG 1 cut(s) 235
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 96, 106
Hin1II CATG 2 cut(s) 215, 303
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 4 cut(s) 79, 184, 219, 335
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 112, 243
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 183, 381
Hpy188III TCNNGA 3 cut(s) 165, 289, 329
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 3 cut(s) 101, 108, 335
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 24, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 302
HpyF3I CTNAG 1 cut(s) 380
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 96, 106
Hsp92II CATG 2 cut(s) 215, 303
HspAI GCGC 1 cut(s) 305
Kzo9I GATC 2 cut(s) 320, 350
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 178, 248, 278, 302, 321, 333, 378
Lsp1109I GCAGC 2 cut(s) 68, 71
LweI GCATC 1 cut(s) 71
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 31, 138
MalI GATC 2 cut(s) 322, 352
MboI GATC 2 cut(s) 320, 350
MboII GAAGA 1 cut(s) 323
MflI RGATCY 1 cut(s) 320
MluCI AATT 3 cut(s) 66, 277, 368
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 2 cut(s) 129, 148
MseI TTAA 1 cut(s) 69
MspI CCGG 1 cut(s) 235
MvnI CGCG 2 cut(s) 90, 174
MwoI GCNNNNNNNGC 2 cut(s) 59, 302
NdeII GATC 2 cut(s) 320, 350
NlaIII CATG 2 cut(s) 215, 303
PfeI GAWTC 3 cut(s) 184, 219, 335
Pfl23II CGTACG 1 cut(s) 100
PkrI GCNGC 4 cut(s) 55, 58, 61, 89
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspLI CGTACG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 4 cut(s) 54, 57, 60, 88
Sau3AI GATC 2 cut(s) 320, 350
SchI GAGTC 1 cut(s) 73
SetI ASST 9 cut(s) 76, 99, 140, 159, 207, 270, 298, 343, 379
SfaNI GCATC 1 cut(s) 71
Sse9I AATT 3 cut(s) 66, 277, 368
SsiI CCGC 5 cut(s) 54, 88, 114, 130, 174
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 18, 77, 217, 353
TasI AATT 3 cut(s) 66, 277, 368
TauI GCSGC 2 cut(s) 56, 90
TfiI GAWTC 3 cut(s) 184, 219, 335
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 1 cut(s) 89
TseI GCWGC 2 cut(s) 56, 59
TspDTI ATGAA 2 cut(s) 200, 288
TspRI CASTG 1 cut(s) 89
XapI RAATTY 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 18
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.