Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000929.1

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Forward (+)

1307 .. 2671

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000929.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgactgtgttagcaaatgactcatcagaaggtgagcaaagaaacaaggccttgtcagtgtgcactgattcgaatactgacttccctgagacgtcaggttcagttggctctgcttcacctgaaatatcaggattcagtcccaagaggaagtcattaatcaaaaggtcagatttttccaaacccaagtctaggcttgtcgatgttcccaatgtgattgatgagactagtttggagcaccactttggtgcaagttccccttatcggagttcattcaatgagggtggttcccattgctccgacaccagttctcagcggaccccggcgatgttgtttccgggcaggactaaagagatggaggagaatgaagacagttacattgggtggattgtgaagaaaaagactcttgtttctgtagttattggggcttttctgtggttgttgaaaactttgtcattcaagatcttagctcttaaattttatctgcacgccttttttgatagaactcgagaatcaatcttccatcagcatgtttttcagacactcttagggcctccgcctatggagattggtgaagctggacacgagaaagatgacactgatatgggaatgcttctaaagatgaagctagaagagacggaggacgccgtacgacgtcgcaccgccatcaacgatcaccgcaagaggttacttcagcacaaagagcttaatcccccgtctgcggaggtcagattcgcactccaaatcctccttaatcatgttcgattctgcatctgcaaccggagagcgtctctctcgccatcgccgaaccagctcacaagcaaattcgaaagtccagaggtatgtttcgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

283

Amino Acids

31.89

Weight (kDa)

7.15

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	95, 655
AciI	CCGC	5 cut(s)	313, 554, 660, 676, 719
AcsI	RAATTY	2 cut(s)	473, 821
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	3 cut(s)	92, 642, 652
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	3 cut(s)	189, 261, 718
AgsI	TTSAA	3 cut(s)	274, 442, 457
AhlI	ACTAGT	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	5 cut(s)	467, 575, 625, 703, 811
AluI	AGCT	5 cut(s)	467, 575, 625, 703, 811
Alw21I	GWGCWC	2 cut(s)	65, 237
Alw26I	GTCTC	4 cut(s)	83, 215, 626, 792
Alw44I	GTGCAC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	48, 548
ApaLI	GTGCAC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	473, 821
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	315, 548
AsuC2I	CCSGG	2 cut(s)	320, 336
AsuHPI	GGTGA	4 cut(s)	44, 108, 581, 665
AsuII	TTCGAA	2 cut(s)	71, 825
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	65, 237
BccI	CCATC	4 cut(s)	346, 528, 671, 805
BceAI	ACGGC	1 cut(s)	629
BcnI	CCSGG	2 cut(s)	320, 336
BcoDI	GTCTC	4 cut(s)	83, 215, 626, 792
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	189, 225, 626
BfmI	CTRYAG	1 cut(s)	411
BglII	AGATCT	1 cut(s)	459
Bme1390I	CCNGG	2 cut(s)	320, 336
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	315, 548
BmiI	GGNNCC	2 cut(s)	286, 317
BmrFI	CCNGG	2 cut(s)	320, 336
BmsI	GCATC	1 cut(s)	777
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	4 cut(s)	772, 804, 774, 806
Bpu14I	TTCGAA	2 cut(s)	71, 825
BpuMI	CCSGG	2 cut(s)	320, 336
BsaHI	GRCGYC	3 cut(s)	92, 642, 652
BsaJI	CCNNGG	1 cut(s)	318
BsaWI	WCCGGW	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 261, 718
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	189, 261, 718
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	78, 323
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	50, 550
BsiHKAI	GWGCWC	2 cut(s)	65, 237
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	320, 335, 778
BsiWI	CGTACG	1 cut(s)	646
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	189, 261, 718
BsmAI	GTCTC	4 cut(s)	83, 215, 626, 792
BsmBI	CGTCTC	3 cut(s)	83, 626, 792
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	612
BsnI	GGCC	2 cut(s)	50, 550
BsoBI	CYCGRG	1 cut(s)	504
Bsp119I	TTCGAA	2 cut(s)	71, 825
Bsp1286I	GDGCHC	2 cut(s)	65, 237
Bsp143I	GATC	2 cut(s)	459, 670
BspACI	CCGC	5 cut(s)	313, 554, 660, 676, 719
BspANI	GGCC	2 cut(s)	50, 550
BspCNI	CTCAG	2 cut(s)	79, 322
BspLI	GGNNCC	2 cut(s)	286, 317
BspT104I	TTCGAA	2 cut(s)	71, 825
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	459, 670
BssNI	GRCGYC	3 cut(s)	92, 642, 652
BssSI	CACGAG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	7, 371
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	3 cut(s)	92, 642, 652
BstBI	TTCGAA	2 cut(s)	71, 825
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	87, 309, 463, 544
BstKTI	GATC	2 cut(s)	462, 673
BstMAI	GTCTC	4 cut(s)	83, 215, 626, 792
BstMBI	GATC	2 cut(s)	459, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	700, 808
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	318, 334
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	50, 550
BtgZI	GCGATG	2 cut(s)	338, 783
BtsIMutI	CAGTG	3 cut(s)	63, 63, 594
Cac8I	GCNNGC	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	315, 548
CseI	GACGC	2 cut(s)	650, 774
Csp6I	GTAC	1 cut(s)	647
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	2 cut(s)	527, 755
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	4 cut(s)	87, 309, 463, 544
DpnI	GATC	2 cut(s)	461, 672
DpnII	GATC	2 cut(s)	459, 670
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	548
Esp3I	CGTCTC	3 cut(s)	83, 626, 792
FaeI	CATG	2 cut(s)	530, 758
FaiI	YATR	5 cut(s)	528, 560, 602, 756, 841
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	2 cut(s)	526, 754
FspBI	CTAG	3 cut(s)	189, 225, 626
HaeIII	GGCC	2 cut(s)	50, 550
HapII	CCGG	3 cut(s)	320, 335, 778
HgaI	GACGC	2 cut(s)	650, 774
Hin1I	GRCGYC	3 cut(s)	92, 642, 652
Hin1II	CATG	2 cut(s)	530, 758
HinfI	GANTC	7 cut(s)	20, 68, 132, 400, 509, 729, 762
HpaII	CCGG	3 cut(s)	320, 335, 778
HphI	GGTGA	4 cut(s)	44, 108, 581, 665
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	6 cut(s)	28, 169, 264, 298, 537, 728
Hpy188III	TCNNGA	4 cut(s)	129, 457, 506, 833
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	2 cut(s)	654, 657
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	7, 371
HpyCH4IV	ACGT	2 cut(s)	92, 652
HpyCH4V	TGCA	5 cut(s)	63, 248, 484, 768, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	700, 808
HpyF3I	CTNAG	4 cut(s)	87, 309, 463, 544
HpySE526I	ACGT	2 cut(s)	92, 652
Hsp92I	GRCGYC	3 cut(s)	92, 642, 652
Hsp92II	CATG	2 cut(s)	530, 758
Kzo9I	GATC	2 cut(s)	459, 670
LmnI	GCTCC	2 cut(s)	232, 299
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	3 cut(s)	189, 225, 626
MaeII	ACGT	2 cut(s)	92, 652
MaeIII	GTNAC	2 cut(s)	371, 684
MalI	GATC	2 cut(s)	461, 672
MboI	GATC	2 cut(s)	459, 670
MboII	GAAGA	4 cut(s)	377, 403, 508, 641
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	65, 237
MluCI	AATT	2 cut(s)	473, 821
MlyI	GAGTC	2 cut(s)	14, 394
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	138, 271, 349, 561, 631, 675, 715, 755, 829
MseI	TTAA	4 cut(s)	155, 471, 705, 750
MslI	CAYNNNNRTG	3 cut(s)	243, 525, 599
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	3 cut(s)	320, 335, 778
MspR9I	CCNGG	2 cut(s)	320, 336
Mva1269I	GAATGC	1 cut(s)	612
MwoI	GCNNNNNNNGC	2 cut(s)	700, 808
NciI	CCSGG	2 cut(s)	320, 336
NdeII	GATC	2 cut(s)	459, 670
NlaIII	CATG	2 cut(s)	530, 758
NlaIV	GGNNCC	2 cut(s)	286, 317
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	2 cut(s)	71, 825
OliI	CACNNNNGTG	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	50
PcsI	WCGNNNNNNNCGW	1 cut(s)	800
PctI	GAATGC	1 cut(s)	612
PfeI	GAWTC	5 cut(s)	68, 132, 509, 729, 762
Pfl23II	CGTACG	1 cut(s)	646
PleI	GAGTC	2 cut(s)	14, 394
PpsI	GAGTC	2 cut(s)	14, 394
PshBI	ATTAAT	1 cut(s)	155
PspLI	CGTACG	1 cut(s)	646
PspN4I	GGNNCC	2 cut(s)	286, 317
PspPI	GGNCC	2 cut(s)	315, 548
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
RseI	CAYNNNNRTG	3 cut(s)	243, 525, 599
SaqAI	TTAA	4 cut(s)	155, 471, 705, 750
Sau3AI	GATC	2 cut(s)	459, 670
Sau96I	GGNCC	2 cut(s)	315, 548
SchI	GAGTC	2 cut(s)	14, 394
ScrFI	CCNGG	2 cut(s)	320, 336
SduI	GDGCHC	2 cut(s)	65, 237
SfaNI	GCATC	1 cut(s)	777
SfcI	CTRYAG	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	504
SfuI	TTCGAA	2 cut(s)	71, 825
SinI	GGWCC	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	3 cut(s)	243, 525, 599
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	2 cut(s)	473, 821
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	5 cut(s)	313, 554, 660, 676, 719
SspMI	CTAG	3 cut(s)	189, 225, 626
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	318, 334
TaaI	ACNGT	2 cut(s)	7, 371
TaiI	ACGT	2 cut(s)	95, 655
TaqI	TCGA	6 cut(s)	71, 198, 505, 760, 825, 846
TasI	AATT	2 cut(s)	473, 821
TfiI	GAWTC	5 cut(s)	68, 132, 509, 729, 762
Tru1I	TTAA	4 cut(s)	155, 471, 705, 750
Tru9I	TTAA	4 cut(s)	155, 471, 705, 750
TscAI	CASTG	3 cut(s)	63, 70, 601
TspDTI	ATGAA	3 cut(s)	258, 378, 635
TspGWI	ACGGA	1 cut(s)	650
TspRI	CASTG	3 cut(s)	63, 70, 601
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	2 cut(s)	473, 821
XceI	RCATGY	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	504
XspI	CTAG	3 cut(s)	189, 225, 626
ZraI	GACGTC	2 cut(s)	93, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.