Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

26507362 .. 26510085

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGACTGTGTTAGCAAATGACTCATCAGAAGGTGAGCAAAGAAACAAGGCCCTGCCAGTGTGCACTGATTCCAATACTGACTTCCCTGAGACGTTAGGTTTAGTTGGCTCTGCTTCACCTGAAATATCAGGATTCAGTCCCAAGAGGAAGTCATTAATCAAAAGGTCAGATTTTTCCAAACCGAAGTCTAGGTTTGTCGATGTTCCCAATGTGATTGATGAGACTAGTTTGGAGCACCACTTTGGTGCAAGTTCCCCTTATCGGAGTTCATTTAATGAGGATTCATTGGAGGTTGGAAATGTCGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAGTGGAGCAAAGTAGGAAAGAAACCATACCCAGCCATGTATTCCAGCATTAATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACAGGATTGCTGAGGATGGGGCCAATGATCATGCGTTCAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

170

Amino Acids

18.72

Weight (kDa)

5.34

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	328, 350, 505
AhlI	ACTAGT	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	355, 440
AluI	AGCT	2 cut(s)	355, 440
Alw21I	GWGCWC	2 cut(s)	65, 237
Alw26I	GTCTC	2 cut(s)	83, 215
Alw44I	GTGCAC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	2 cut(s)	48, 486
ApaLI	GTGCAC	1 cut(s)	61
AseI	ATTAAT	2 cut(s)	155, 414
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	49, 486
AsuHPI	GGTGA	3 cut(s)	44, 108, 460
BaeGI	GKGCMC	1 cut(s)	65
Bbv12I	GWGCWC	2 cut(s)	65, 237
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	439, 476
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	83, 215
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	189, 225
BmgT120I	GGNCC	2 cut(s)	49, 486
BmiI	GGNNCC	1 cut(s)	487
Bpu10I	CCTNAGC	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	3 cut(s)	78, 330, 468
BseNI	ACTGG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	65
BseYI	CCCAGC	1 cut(s)	394
BshFI	GGCC	2 cut(s)	50, 488
BsiHKAI	GWGCWC	2 cut(s)	65, 237
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	83, 215
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	50, 488
Bsp1286I	GDGCHC	2 cut(s)	65, 237
Bsp143I	GATC	3 cut(s)	433, 463, 493
BspANI	GGCC	2 cut(s)	50, 488
BspCNI	CTCAG	3 cut(s)	79, 331, 469
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	3 cut(s)	433, 463, 493
Bst4CI	ACNGT	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	87, 339, 477
BstF5I	GGATG	1 cut(s)	487
BstKTI	GATC	3 cut(s)	436, 466, 496
BstMAI	GTCTC	2 cut(s)	83, 215
BstMBI	GATC	3 cut(s)	433, 463, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	50, 488
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	63, 63
CciI	TCATGA	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	49, 486
CviAII	CATG	4 cut(s)	320, 359, 400, 497
CviJI	RGCY	6 cut(s)	50, 108, 355, 398, 440, 488
CviKI_1	RGCY	6 cut(s)	50, 108, 355, 398, 440, 488
DdeI	CTNAG	3 cut(s)	87, 339, 477
DpnI	GATC	3 cut(s)	435, 465, 495
DpnII	GATC	3 cut(s)	433, 463, 493
EcoO109I	RGGNCCY	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	4 cut(s)	323, 362, 403, 500
FaiI	YATR	5 cut(s)	321, 360, 391, 401, 498
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	4 cut(s)	319, 358, 399, 496
FbaI	TGATCA	1 cut(s)	493
FokI	GGATG	1 cut(s)	494
FspBI	CTAG	2 cut(s)	189, 225
GsaI	CCCAGC	1 cut(s)	398
HaeIII	GGCC	2 cut(s)	50, 488
Hin1II	CATG	4 cut(s)	323, 362, 403, 500
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	6 cut(s)	20, 68, 132, 281, 423, 451
HphI	GGTGA	3 cut(s)	44, 108, 460
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	4 cut(s)	28, 169, 264, 340
Hpy188III	TCNNGA	3 cut(s)	129, 359, 431
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	63, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	352
HpyF3I	CTNAG	3 cut(s)	87, 339, 477
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	323, 362, 403, 500
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	433, 463, 493
LmnI	GCTCC	2 cut(s)	232, 369
LpnPI	CCDG	9 cut(s)	65, 69, 99, 114, 132, 408, 421, 450, 454
MaeI	CTAG	2 cut(s)	189, 225
MaeII	ACGT	1 cut(s)	92
MalI	GATC	3 cut(s)	435, 465, 495
MboI	GATC	3 cut(s)	433, 463, 493
MhlI	GDGCHC	2 cut(s)	65, 237
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	5 cut(s)	138, 271, 283, 298, 472
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	4 cut(s)	155, 273, 312, 414
MslI	CAYNNNNRTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	1 cut(s)	352
NdeII	GATC	3 cut(s)	433, 463, 493
NlaIII	CATG	4 cut(s)	323, 362, 403, 500
NlaIV	GGNNCC	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	5 cut(s)	68, 132, 281, 423, 451
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	2 cut(s)	155, 414
PspFI	CCCAGC	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	487
PspPI	GGNCC	2 cut(s)	49, 486
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	4 cut(s)	155, 273, 312, 414
Sau3AI	GATC	3 cut(s)	433, 463, 493
Sau96I	GGNCC	2 cut(s)	49, 486
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	2 cut(s)	65, 237
SmiMI	CAYNNNNRTG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	224
SspMI	CTAG	2 cut(s)	189, 225
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	198, 303
TfiI	GAWTC	5 cut(s)	68, 132, 281, 423, 451
Tru1I	TTAA	4 cut(s)	155, 273, 312, 414
Tru9I	TTAA	4 cut(s)	155, 273, 312, 414
TscAI	CASTG	2 cut(s)	63, 70
TspDTI	ATGAA	4 cut(s)	258, 273, 308, 347
TspRI	CASTG	2 cut(s)	63, 70
VneI	GTGCAC	1 cut(s)	61
VspI	ATTAAT	2 cut(s)	155, 414
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	189, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.