Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

26333082 .. 26334699

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG253200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTGTGTTAGCAAATGACTCATCAGAAGGTGAGCAAAGAAACAAGGCCTTGTCAGTGTGCACTGATTCGAATACTGACTTCCCTGAGACGTCAGGTTCAGTTGGCTCTGCTTCACCTGAAATATCAGGATTCAGTCCCAAGAGGAAGTCATTAATCAAAAGGTCAGATTTTTCCAAACCCAAGTCTAGGCTTGTCGATGTTCCCAATGTGATTGATGAGACTAGTTTGGAGCAGCACTTTGGTGCAAGTTCCCCTTATCGGAGTTCATTCAATGAGGGTGGTTCCCATTGCTCCGACACCAGTTCTCAGCGGACCCCGGCGATGTTGTTTCCGGGCAGGACTAAAGAGATGGAGGAGAATGAAGACAGTTACATTGGGTGGATTGTGAAGAAAAGGGTCTTCATTGAGTGGATTGCTTTTCTGTGCATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

145

Amino Acids

16.03

Weight (kDa)

5.43

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	189, 261
AgsI	TTSAA	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	243
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	83, 215
Alw44I	GTGCAC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	235
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	320, 336
AsuHPI	GGTGA	2 cut(s)	44, 108
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	372, 394
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	320, 336
BcoDI	GTCTC	2 cut(s)	83, 215
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	189, 225
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	320, 336
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	286, 317
BmrFI	CCNGG	2 cut(s)	320, 336
BpiI	GAAGAC	2 cut(s)	372, 394
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	320, 336
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 261
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	189, 261
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	78, 323
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	320, 335
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	189, 261
BsmAI	GTCTC	2 cut(s)	83, 215
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	79, 322
BspLI	GGNNCC	2 cut(s)	286, 317
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	7, 371
BstACI	GRCGYC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	87, 309
BstMAI	GTCTC	2 cut(s)	83, 215
BstSCI	CCNGG	2 cut(s)	318, 334
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	2 cut(s)	372, 394
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	63, 63
Cfr13I	GGNCC	1 cut(s)	315
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviJI	RGCY	3 cut(s)	50, 108, 193
CviKI_1	RGCY	3 cut(s)	50, 108, 193
DdeI	CTNAG	2 cut(s)	87, 309
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	189, 225
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	320, 335
Hin1I	GRCGYC	1 cut(s)	92
HinfI	GANTC	3 cut(s)	20, 68, 132
HpaII	CCGG	2 cut(s)	320, 335
HphI	GGTGA	2 cut(s)	44, 108
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	4 cut(s)	28, 169, 264, 298
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	7, 371
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	63, 248, 429
HpyF3I	CTNAG	2 cut(s)	87, 309
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	232, 299
LpnPI	CCDG	8 cut(s)	81, 99, 114, 132, 316, 325, 333, 348
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	189, 225
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	371
MboII	GAAGA	3 cut(s)	377, 394, 403
MhlI	GDGCHC	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	3 cut(s)	138, 271, 349
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	320, 335
MspR9I	CCNGG	2 cut(s)	320, 336
Mva1269I	GAATGC	1 cut(s)	429
NciI	CCSGG	2 cut(s)	320, 336
NlaIV	GGNNCC	2 cut(s)	286, 317
NspV	TTCGAA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	68, 132
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	286, 317
PspPI	GGNCC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	320, 336
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	34, 95, 100, 121, 167
SfcI	CTRYAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	189, 225
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	318, 334
TaaI	ACNGT	2 cut(s)	7, 371
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	71, 198
TfiI	GAWTC	2 cut(s)	68, 132
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	63, 70
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	258, 378, 394
TspRI	CASTG	2 cut(s)	63, 70
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	155
XspI	CTAG	2 cut(s)	189, 225
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.