Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

27006318 .. 27007730

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG256900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACTGTGTTAGCAAATGACTCATCAGAAGGTGAGCAAAGAAACAAGGCCCTGCAGCCAGTGTGCACTGATTCCAATACTGACTTCCCTGAGACGTCAGGTTCAGTTGGCTCTGCTTCACCTGAAATATCAGGATTCAGTCCCAAGAGGAAGTCATTAATCAAAAGGTCAGATTTTTCCAAACCCAAGTCTAGGTTTGTCGATGTTCCCAATGTGATTGATGAGACTAGTTTGGAGCACCACTTTGGTGCAAGTTCCCCTAATCAGAGTTCATTCAATGAGAGTGGTTCCCATTGCTCCGACACCAGTTCTCAGCGGACCCCGGCGATGTTGTTTCCGGGCAGGACTAAAGAGATGGAGGAGAATGAAGAGAGTTACATTGGGTGGATCGTGAAGAAAAAGGTCTTCATTGAGTGGATTGTTTTTCTGTGCATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

146

Amino Acids

16.18

Weight (kDa)

5.39

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	98
AciI	CCGC	1 cut(s)	316
AclWI	GGATC	1 cut(s)	395
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	277
AhlI	ACTAGT	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	246
Alw21I	GWGCWC	2 cut(s)	68, 240
Alw26I	GTCTC	2 cut(s)	86, 218
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	55
AseI	ATTAAT	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	49, 318
AsuC2I	CCSGG	2 cut(s)	323, 339
AsuHPI	GGTGA	2 cut(s)	44, 111
AvaII	GGWCC	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	68, 240
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	323, 339
BcoDI	GTCTC	2 cut(s)	86, 218
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	2 cut(s)	192, 228
BfmI	CTRYAG	2 cut(s)	53, 437
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	323, 339
Bme18I	GGWCC	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	49, 318
BmiI	GGNNCC	2 cut(s)	289, 320
BmrFI	CCNGG	2 cut(s)	323, 339
BpiI	GAAGAC	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	323, 339
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	59, 306
Bse3DI	GCAATG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	81, 326
BseNI	ACTGG	2 cut(s)	59, 306
BseRI	GAGGAG	1 cut(s)	374
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	67
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	2 cut(s)	68, 240
BsiSI	CCGG	2 cut(s)	323, 338
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	86, 218
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	68, 240
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	82, 325
BspLI	GGNNCC	2 cut(s)	289, 320
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	59, 306
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	90, 312
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	2 cut(s)	86, 218
BstMBI	GATC	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	321, 337
BstSFI	CTRYAG	2 cut(s)	53, 437
BstSLI	GKGCMC	1 cut(s)	68
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	341
BtsIMutI	CAGTG	2 cut(s)	66, 66
Cfr13I	GGNCC	2 cut(s)	49, 318
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviJI	RGCY	3 cut(s)	50, 58, 111
CviKI_1	RGCY	3 cut(s)	50, 58, 111
DdeI	CTNAG	2 cut(s)	90, 312
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco47I	GGWCC	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	86
FaqI	GGGAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	56
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	2 cut(s)	192, 228
GluI	GCNGC	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	323, 338
Hin1I	GRCGYC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	20, 71, 135
HpaII	CCGG	2 cut(s)	323, 338
HphI	GGTGA	2 cut(s)	44, 111
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	4 cut(s)	28, 172, 267, 301
Hpy188III	TCNNGA	2 cut(s)	132, 391
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	55, 66, 251, 432
HpyF3I	CTNAG	2 cut(s)	90, 312
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	2 cut(s)	235, 302
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	192, 228
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	3 cut(s)	380, 397, 406
MhlI	GDGCHC	2 cut(s)	68, 240
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	2 cut(s)	141, 352
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	2 cut(s)	323, 338
MspR9I	CCNGG	2 cut(s)	323, 339
Mva1269I	GAATGC	1 cut(s)	432
NciI	CCSGG	2 cut(s)	323, 339
NdeII	GATC	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	289, 320
OliI	CACNNNNGTG	1 cut(s)	246
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	71, 135
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	289, 320
PspPI	GGNCC	2 cut(s)	49, 318
PstI	CTGCAG	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	2 cut(s)	49, 318
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	323, 339
SduI	GDGCHC	2 cut(s)	68, 240
SetI	ASST	7 cut(s)	34, 98, 103, 124, 170, 197, 405
SfcI	CTRYAG	2 cut(s)	53, 437
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	192, 228
StyD4I	CCNGG	2 cut(s)	321, 337
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	71, 135
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	66, 73
TseI	GCWGC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	261, 381, 397
TspRI	CASTG	2 cut(s)	66, 73
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	318
VspI	ATTAAT	1 cut(s)	158
XspI	CTAG	2 cut(s)	192, 228
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.