Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

198881 .. 200059

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004283.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgactgtgttagcaaatgactcatcagaaggtgagcaaagaaacaaggccttgtcagtgtgcactgattcgaatactgacttccctgagacgtcaggttcagttggctctgcttcacctgaaatatcaggattcagtcccaagaggaagtcattaatcaaaaggtcagatttttccaaacccaagtctaggcttgtcgatgttcccaatgtgattgatgagactagtttggagcaccactttggtgcaagttccccttatcggagttcattcaatgagggtggttcccattgctccgacaccagttctcagcggaccccggcgatgttgtttccgggcaggactaaagagatggaggagaatgaagacagttacattgggtggattgtgaagaaaaggactcttgtttctgtagttattggggcttttctgaggttgttgaaaactttgtcattcaagatcttagctcttaaattttatctgcacgccttttttgatagaactcgagaatcaatcttccatcagcatgtttttcagacactcttagggcctccgcctatggagattggtgaagctggacacgagaaagatgacactgatatgggaaagcttctaaagatgaagctagaagagagtttgaagatgatggagattactaatgagaaggaagcaactgctgctgcccaccacatctttcatagcactgctaagtgtggacggaggacgtcgtacgaggtcgcaccgccatcaccgatcaccgcaagaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

256

Amino Acids

28.41

Weight (kDa)

7.16

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	95, 728
AciI	CCGC	4 cut(s)	313, 554, 743, 759
AcsI	RAATTY	1 cut(s)	473
AcyI	GRCGYC	2 cut(s)	92, 725
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	2 cut(s)	189, 261
AgsI	TTSAA	4 cut(s)	274, 442, 457, 640
AhlI	ACTAGT	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	4 cut(s)	467, 575, 610, 625
AluI	AGCT	4 cut(s)	467, 575, 610, 625
Alw21I	GWGCWC	2 cut(s)	65, 237
Alw26I	GTCTC	2 cut(s)	83, 215
Alw44I	GTGCAC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	2 cut(s)	48, 548
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	677, 680
ApoI	RAATTY	1 cut(s)	473
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	315, 548
AsuC2I	CCSGG	2 cut(s)	320, 336
AsuHPI	GGTGA	5 cut(s)	44, 108, 581, 741, 748
AsuII	TTCGAA	1 cut(s)	71
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	372
Bbv12I	GWGCWC	2 cut(s)	65, 237
BbvI	GCAGC	2 cut(s)	664, 667
BccI	CCATC	4 cut(s)	346, 528, 640, 754
BcnI	CCSGG	2 cut(s)	320, 336
BcoDI	GTCTC	2 cut(s)	83, 215
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	3 cut(s)	189, 225, 626
BfmI	CTRYAG	1 cut(s)	411
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	2 cut(s)	678, 681
BlsI	GCNGC	2 cut(s)	679, 682
Bme1390I	CCNGG	2 cut(s)	320, 336
Bme18I	GGWCC	1 cut(s)	315
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	2 cut(s)	315, 548
BmiI	GGNNCC	2 cut(s)	286, 317
BmrFI	CCNGG	2 cut(s)	320, 336
BpiI	GAAGAC	1 cut(s)	372
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	320, 336
BsaHI	GRCGYC	2 cut(s)	92, 725
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 261
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	189, 261
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	78, 323, 422
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	664, 667
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	50, 550
BsiHKAI	GWGCWC	2 cut(s)	65, 237
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	320, 335
BsiWI	CGTACG	1 cut(s)	729
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	189, 261
BsmAI	GTCTC	2 cut(s)	83, 215
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	50, 550
BsoBI	CYCGRG	1 cut(s)	504
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	65, 237
Bsp143I	GATC	2 cut(s)	459, 753
BspACI	CCGC	4 cut(s)	313, 554, 743, 759
BspANI	GGCC	2 cut(s)	50, 550
BspCNI	CTCAG	3 cut(s)	79, 322, 423
BspLI	GGNNCC	2 cut(s)	286, 317
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	459, 753
BssNI	GRCGYC	2 cut(s)	92, 725
BssSI	CACGAG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	581
Bst4CI	ACNGT	2 cut(s)	7, 371
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	2 cut(s)	92, 725
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	6 cut(s)	87, 309, 431, 463, 544, 708
BstKTI	GATC	2 cut(s)	462, 756
BstMAI	GTCTC	2 cut(s)	83, 215
BstMBI	GATC	2 cut(s)	459, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	318, 334
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	2 cut(s)	664, 667
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	2 cut(s)	50, 550
BtgZI	GCGATG	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	4 cut(s)	63, 63, 594, 702
Cac8I	GCNNGC	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	315, 548
Csp6I	GTAC	1 cut(s)	730
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	527
CviJI	RGCY	9 cut(s)	50, 108, 193, 425, 467, 550, 575, 610, 625
CviKI_1	RGCY	9 cut(s)	50, 108, 193, 425, 467, 550, 575, 610, 625
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	6 cut(s)	87, 309, 431, 463, 544, 708
DpnI	GATC	2 cut(s)	461, 755
DpnII	GATC	2 cut(s)	459, 753
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	543
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	1 cut(s)	530
FaiI	YATR	4 cut(s)	528, 560, 602, 699
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	1 cut(s)	526
Fnu4HI	GCNGC	2 cut(s)	678, 681
Fsp4HI	GCNGC	2 cut(s)	678, 681
FspBI	CTAG	3 cut(s)	189, 225, 626
GluI	GCNGC	2 cut(s)	678, 681
HaeIII	GGCC	2 cut(s)	50, 550
HapII	CCGG	2 cut(s)	320, 335
Hin1I	GRCGYC	2 cut(s)	92, 725
Hin1II	CATG	1 cut(s)	530
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	5 cut(s)	20, 68, 132, 400, 509
HpaII	CCGG	2 cut(s)	320, 335
HphI	GGTGA	5 cut(s)	44, 108, 581, 741, 748
Hpy166II	GTNNAC	2 cut(s)	63, 716
Hpy188I	TCNGA	6 cut(s)	28, 169, 264, 298, 432, 537
Hpy188III	TCNNGA	3 cut(s)	129, 457, 506
Hpy8I	GTNNAC	2 cut(s)	63, 716
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	2 cut(s)	23, 658
HpyCH4III	ACNGT	2 cut(s)	7, 371
HpyCH4IV	ACGT	2 cut(s)	92, 725
HpyCH4V	TGCA	3 cut(s)	63, 248, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	6 cut(s)	87, 309, 431, 463, 544, 708
HpySE526I	ACGT	2 cut(s)	92, 725
Hsp92I	GRCGYC	2 cut(s)	92, 725
Hsp92II	CATG	1 cut(s)	530
Kzo9I	GATC	2 cut(s)	459, 753
LmnI	GCTCC	2 cut(s)	232, 299
LpnPI	CCDG	9 cut(s)	81, 99, 114, 132, 316, 325, 333, 348, 561
Lsp1109I	GCAGC	2 cut(s)	664, 667
MaeI	CTAG	3 cut(s)	189, 225, 626
MaeII	ACGT	2 cut(s)	92, 725
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	2 cut(s)	461, 755
MboI	GATC	2 cut(s)	459, 753
MboII	GAAGA	5 cut(s)	377, 403, 508, 641, 652
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	65, 237
MluCI	AATT	1 cut(s)	473
MlyI	GAGTC	2 cut(s)	14, 394
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	138, 271, 349, 426, 561, 714, 727, 758
MseI	TTAA	3 cut(s)	155, 471, 769
MslI	CAYNNNNRTG	3 cut(s)	243, 525, 599
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	320, 335
MspR9I	CCNGG	2 cut(s)	320, 336
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	2 cut(s)	320, 336
NdeII	GATC	2 cut(s)	459, 753
NlaIII	CATG	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	286, 317
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	243
PaeR7I	CTCGAG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	68, 132, 509
Pfl23II	CGTACG	1 cut(s)	729
PkrI	GCNGC	2 cut(s)	679, 682
PleI	GAGTC	2 cut(s)	14, 394
PpsI	GAGTC	2 cut(s)	14, 394
PshBI	ATTAAT	1 cut(s)	155
PspLI	CGTACG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	286, 317
PspPI	GGNCC	2 cut(s)	315, 548
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	3 cut(s)	243, 525, 599
SaqAI	TTAA	3 cut(s)	155, 471, 769
SatI	GCNGC	2 cut(s)	678, 681
Sau3AI	GATC	2 cut(s)	459, 753
Sau96I	GGNCC	2 cut(s)	315, 548
SchI	GAGTC	2 cut(s)	14, 394
ScrFI	CCNGG	2 cut(s)	320, 336
SduI	GDGCHC	2 cut(s)	65, 237
SfcI	CTRYAG	1 cut(s)	411
Sfr274I	CTCGAG	1 cut(s)	504
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	315
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	3 cut(s)	243, 525, 599
SmlI	CTYRAG	1 cut(s)	504
SmoI	CTYRAG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	224
Sse9I	AATT	1 cut(s)	473
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	4 cut(s)	313, 554, 743, 759
SspMI	CTAG	3 cut(s)	189, 225, 626
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	318, 334
TaaI	ACNGT	2 cut(s)	7, 371
TaiI	ACGT	2 cut(s)	95, 728
TaqI	TCGA	3 cut(s)	71, 198, 505
TasI	AATT	1 cut(s)	473
TfiI	GAWTC	3 cut(s)	68, 132, 509
Tru1I	TTAA	3 cut(s)	155, 471, 769
Tru9I	TTAA	3 cut(s)	155, 471, 769
TscAI	CASTG	4 cut(s)	63, 70, 601, 709
TseI	GCWGC	2 cut(s)	677, 680
TspDTI	ATGAA	4 cut(s)	258, 378, 635, 686
TspGWI	ACGGA	1 cut(s)	733
TspRI	CASTG	4 cut(s)	63, 70, 601, 709
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	155
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	504
XspI	CTAG	3 cut(s)	189, 225, 626
ZraI	GACGTC	2 cut(s)	93, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.