Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

25993352 .. 26006111

Gene Structure 12760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG251500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGCGAGTTTGTAACTTTGGCATGAGTTGTGCAGTGATTATGAGTTTTTCTCTTGCACAACTAGGTATTGCCCAAAAACACGACTACTTGATGAGTGATGAAGATAGCTTTAAAGAAAGCTTGTCTAAAAGGAATGGAGATCAAGTTGTACCGGAAGTTGGAAGCCCGGAGATGACGGTGTTAGCAAATGACTCATCAGAAGGTGAGCAAAGAAACAAGGCCCTGCCAGTGTGCACTGATTCCAATACTGACTCCCCTGAGACGTCAGGTTCAGTTGGCTCTGCTTCACCTGAAATATCAGGATTCAGTCCCAAGAGGAAGTCATTAATCAAAAGGTCAGATTTTTCCAAACCCAAGTCTAGGTTTGTCGATGTTCCCAATGTGATTGATGAGACTAGTTTGGAGCACCACATTGGTGCAAGTTCCCCTTATCGGAGTTTATTCAATGAGGGTGGTTTCCATTGCTCCGACACCAGTTCACAGCGGACCCCGGCGATGTTGTTTCCGGGCAGGACTAAAGAGATGGAGGAGAATGAAGAGAGTTATATTGGGTGGATTGTGAAGAAAAAGGTCTTCATTGGGTGGATTGTTTTTCTGTGCATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

202

Amino Acids

22.29

Weight (kDa)

5.44

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	266
AciI	CCGC	1 cut(s)	484
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	3 cut(s)	158, 360, 432
AgsI	TTSAA	1 cut(s)	445
AhlI	ACTAGT	1 cut(s)	395
AleI	CACNNNNGTG	1 cut(s)	414
AluBI	AGCT	2 cut(s)	108, 120
AluI	AGCT	2 cut(s)	108, 120
Alw21I	GWGCWC	2 cut(s)	236, 408
Alw26I	GTCTC	2 cut(s)	254, 386
Alw44I	GTGCAC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	220, 486
AsuC2I	CCSGG	3 cut(s)	167, 491, 507
AsuHPI	GGTGA	2 cut(s)	215, 279
AvaII	GGWCC	1 cut(s)	486
BaeGI	GKGCMC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	2 cut(s)	236, 408
BccI	CCATC	1 cut(s)	517
BcnI	CCSGG	3 cut(s)	167, 491, 507
BcoDI	GTCTC	2 cut(s)	254, 386
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	3 cut(s)	62, 360, 396
BfmI	CTRYAG	1 cut(s)	605
Bme1390I	CCNGG	3 cut(s)	167, 491, 507
Bme18I	GGWCC	1 cut(s)	486
BmgT120I	GGNCC	2 cut(s)	220, 486
BmiI	GGNNCC	1 cut(s)	488
BmrFI	CCNGG	3 cut(s)	167, 491, 507
BpiI	GAAGAC	1 cut(s)	565
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpuMI	CCSGG	3 cut(s)	167, 491, 507
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 360, 432
Bse1I	ACTGG	2 cut(s)	227, 474
Bse3DI	GCAATG	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	489
BseLI	CCNNNNNNNGG	3 cut(s)	158, 360, 432
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	227, 474
BseRI	GAGGAG	1 cut(s)	542
BseSI	GKGCMC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	221
BsiHKAI	GWGCWC	2 cut(s)	236, 408
BsiSI	CCGG	4 cut(s)	152, 167, 491, 506
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	3 cut(s)	158, 360, 432
BsmAI	GTCTC	2 cut(s)	254, 386
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	294
BsmI	GAATGC	1 cut(s)	600
BsnI	GGCC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	236, 408
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	227, 474
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	1 cut(s)	139
BssNI	GRCGYC	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	531
BstACI	GRCGYC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	254, 386
BstMBI	GATC	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	165, 489, 505
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	565
BsuRI	GGCC	1 cut(s)	221
BtgZI	GCGATG	1 cut(s)	509
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 234, 234
Cfr13I	GGNCC	2 cut(s)	220, 486
Csp6I	GTAC	1 cut(s)	149
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	5 cut(s)	108, 120, 165, 221, 279
CviKI_1	RGCY	5 cut(s)	108, 120, 165, 221, 279
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
DraI	TTTAAA	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 41, 546
FalI	AAGNNNNNCTT	2 cut(s)	412, 444
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	1 cut(s)	21
FspBI	CTAG	3 cut(s)	62, 360, 396
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	4 cut(s)	152, 167, 491, 506
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	4 cut(s)	191, 239, 251, 303
HpaII	CCGG	4 cut(s)	152, 167, 491, 506
HphI	GGTGA	2 cut(s)	215, 279
Hpy166II	GTNNAC	2 cut(s)	234, 479
Hpy188I	TCNGA	4 cut(s)	199, 340, 435, 469
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	234, 479
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	5 cut(s)	32, 56, 234, 419, 600
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	2 cut(s)	403, 470
MaeI	CTAG	3 cut(s)	62, 360, 396
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	4 cut(s)	113, 548, 565, 574
MhlI	GDGCHC	2 cut(s)	236, 408
MlyI	GAGTC	2 cut(s)	185, 245
MmeI	TCCRAC	2 cut(s)	139, 492
MnlI	CCTC	3 cut(s)	309, 442, 520
MseI	TTAA	2 cut(s)	111, 326
MslI	CAYNNNNRTG	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	4 cut(s)	152, 167, 491, 506
MspR9I	CCNGG	3 cut(s)	167, 491, 507
Mva1269I	GAATGC	1 cut(s)	600
NciI	CCSGG	3 cut(s)	167, 491, 507
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	488
OliI	CACNNNNGTG	1 cut(s)	414
PctI	GAATGC	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	239, 303
PleI	GAGTC	2 cut(s)	185, 245
PpsI	GAGTC	2 cut(s)	185, 245
PshBI	ATTAAT	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	488
PspPI	GGNCC	2 cut(s)	220, 486
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	111, 326
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	220, 486
SchI	GAGTC	2 cut(s)	185, 245
ScrFI	CCNGG	3 cut(s)	167, 491, 507
SduI	GDGCHC	2 cut(s)	236, 408
SfcI	CTRYAG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	486
SmiMI	CAYNNNNRTG	1 cut(s)	414
SpeI	ACTAGT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	3 cut(s)	62, 360, 396
StyD4I	CCNGG	3 cut(s)	165, 489, 505
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	239, 303
Tru1I	TTAA	2 cut(s)	111, 326
Tru9I	TTAA	2 cut(s)	111, 326
TscAI	CASTG	3 cut(s)	39, 234, 241
TspDTI	ATGAA	3 cut(s)	114, 549, 565
TspRI	CASTG	3 cut(s)	39, 234, 241
VneI	GTGCAC	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	486
VspI	ATTAAT	1 cut(s)	326
XspI	CTAG	3 cut(s)	62, 360, 396
ZraI	GACGTC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.