Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

2901542 .. 2908922

Gene Structure 7381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG018100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTCAAGAACAGGACCTGAGTCTCCTACCTGGATGCTTGAGGAGTTGGTTGACGGTGATGTGAGGAAATCAAAGAAGGGTAGCAAGGTGGCTTCACCTCATGTGGAGGCAGATGGTGAAACTGATTATGGTGATTTTATTGATCCAGGTTTTGTGGATGATCATTATGTTGCTGATGATGATTGGATACCTGAAATGGATATGGAGATGGTTAATGAGATGAAGTTGTTGATCAGAGTCTATGAGAATTGCATGGTCAAGGCAACTTACTTATCTGAACGATTTTTGGATGGGATTGAGTTAAATCAGAATTGGTCAACAGATTCATTGGAGGTTGGAAATGACGAGGATTTTAAGGTTCATGTGTTCAAATCATCATCTGAGTTGCTTGAAAAGCTTCATGAGAAGTGGAGCAAAGTAGGAAAGAAACCATACCCAGCCATGTATTCCAACATTTATGGTGGAATCATTCTTGATCCAGCTTTGATGGTGATTCCAATAGACGATCACATGGTTCATCGAGGCCATGGTGTGTTTGACACAGCCATTCTCTTAAATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

Aminotran_4

Protein Analysis

187

Amino Acids

21.23

Weight (kDa)

4.59

Isoelectric Point (pI)

27.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	137, 470
AgsI	TTSAA	2 cut(s)	370, 392
AjnI	CCWGG	2 cut(s)	29, 145
AluBI	AGCT	2 cut(s)	397, 482
AluI	AGCT	2 cut(s)	397, 482
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	137, 470
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	5 cut(s)	68, 87, 128, 143, 502
AvaII	GGWCC	1 cut(s)	14
BccI	CCATC	4 cut(s)	107, 202, 284, 481
BciT130I	CCWGG	2 cut(s)	31, 147
BciVI	GTATCC	1 cut(s)	180
BclI	TGATCA	2 cut(s)	160, 231
BcoDI	GTCTC	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	180
Bme1390I	CCNGG	2 cut(s)	31, 147
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	31, 147
BmsI	GCATC	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	526
BseBI	CCWGG	2 cut(s)	31, 147
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	3 cut(s)	39, 163, 295
BseMII	CTCAG	2 cut(s)	9, 372
BseRI	GAGGAG	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	436
BshFI	GGCC	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	142, 160, 231, 475, 505
Bsp19I	CCATGG	1 cut(s)	526
BspANI	GGCC	1 cut(s)	525
BspCNI	CTCAG	2 cut(s)	10, 373
BspHI	TCATGA	1 cut(s)	400
BspPI	GGATC	2 cut(s)	137, 470
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	5 cut(s)	142, 160, 231, 475, 505
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	31, 147
Bst4CI	ACNGT	1 cut(s)	56
BstDEI	CTNAG	2 cut(s)	18, 381
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	39, 163, 295
BstKTI	GATC	5 cut(s)	145, 163, 234, 478, 508
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	5 cut(s)	142, 160, 231, 475, 505
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	2 cut(s)	31, 147
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSCI	CCNGG	2 cut(s)	29, 145
BsuI	GTATCC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	39, 163, 295
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	7 cut(s)	101, 253, 362, 401, 442, 511, 527
CviJI	RGCY	6 cut(s)	92, 397, 440, 482, 525, 545
CviKI_1	RGCY	6 cut(s)	92, 397, 440, 482, 525, 545
DdeI	CTNAG	2 cut(s)	18, 381
DpnI	GATC	5 cut(s)	144, 162, 233, 477, 507
DpnII	GATC	5 cut(s)	142, 160, 231, 475, 505
Eco130I	CCWWGG	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	29, 145
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	7 cut(s)	104, 256, 365, 404, 445, 514, 530
FatI	CATG	7 cut(s)	100, 252, 361, 400, 441, 510, 526
FbaI	TGATCA	2 cut(s)	160, 231
FokI	GGATG	3 cut(s)	46, 170, 302
GsaI	CCCAGC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	525
Hin1II	CATG	7 cut(s)	104, 256, 365, 404, 445, 514, 530
HincII	GTYRAC	2 cut(s)	52, 318
HindII	GTYRAC	2 cut(s)	52, 318
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	5 cut(s)	20, 237, 323, 465, 493
HphI	GGTGA	5 cut(s)	68, 87, 128, 143, 502
Hpy166II	GTNNAC	2 cut(s)	52, 318
Hpy188I	TCNGA	4 cut(s)	236, 277, 309, 382
Hpy188III	TCNNGA	3 cut(s)	6, 401, 473
Hpy8I	GTNNAC	2 cut(s)	52, 318
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	2 cut(s)	18, 381
Hsp92II	CATG	7 cut(s)	104, 256, 365, 404, 445, 514, 530
Ksp22I	TGATCA	2 cut(s)	160, 231
Kzo9I	GATC	5 cut(s)	142, 160, 231, 475, 505
LmnI	GCTCC	1 cut(s)	411
LpnPI	CCDG	8 cut(s)	16, 30, 43, 132, 159, 204, 450, 492
LweI	GCATC	1 cut(s)	24
MalI	GATC	5 cut(s)	144, 162, 233, 477, 507
MboI	GATC	5 cut(s)	142, 160, 231, 475, 505
MluCI	AATT	2 cut(s)	247, 310
MlyI	GAGTC	2 cut(s)	29, 246
MmeI	TCCRAC	2 cut(s)	316, 474
MnlI	CCTC	7 cut(s)	34, 57, 100, 108, 325, 340, 515
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	4 cut(s)	213, 302, 354, 554
MspR9I	CCNGG	2 cut(s)	31, 147
MvaI	CCWGG	2 cut(s)	31, 147
MwoI	GCNNNNNNNGC	1 cut(s)	394
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	5 cut(s)	142, 160, 231, 475, 505
NlaIII	CATG	7 cut(s)	104, 256, 365, 404, 445, 514, 530
PagI	TCATGA	1 cut(s)	400
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	3 cut(s)	323, 465, 493
PleI	GAGTC	2 cut(s)	28, 245
PpsI	GAGTC	2 cut(s)	28, 245
PpuMI	RGGWCCY	1 cut(s)	14
PshAI	GACNNNNGTC	1 cut(s)	19
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	2 cut(s)	29, 145
PspFI	CCCAGC	1 cut(s)	436
PspGI	CCWGG	2 cut(s)	29, 145
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	213, 302, 354, 554
Sau3AI	GATC	5 cut(s)	142, 160, 231, 475, 505
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	29, 246
ScrFI	CCNGG	2 cut(s)	31, 147
SfaNI	GCATC	1 cut(s)	24
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	247, 310
StyD4I	CCNGG	2 cut(s)	29, 145
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	520
TasI	AATT	2 cut(s)	247, 310
TfiI	GAWTC	3 cut(s)	323, 465, 493
Tru1I	TTAA	4 cut(s)	213, 302, 354, 554
Tru9I	TTAA	4 cut(s)	213, 302, 354, 554
TspDTI	ATGAA	5 cut(s)	236, 315, 350, 389, 506
VpaK11BI	GGWCC	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.