Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014847

Physical Location & Seq

Genomic Coordinates Reverse (-)

27024528 .. 27026145

Gene Structure 1618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG244600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTGTGTTAGCAAATGACTCATCAGAAGGTGAGCAAAGAAACAAGGCCTTGTCAGTGTGCACTGATTCGAATACTGACTTCCCTGAGACGTCAGGTTCAGTTGGCTCTGCTTCACCTGAAATATCAGGATTCAGTCCCAAGAGGAAGTCATTAATCAAAAGGTCAGATTTTTCCAAACCCAAGTCTAGGCTTGTCGATGTTCCCAATGTGATTGATGAGACTAGTTTGGAGCAGCACTTTGGTGCAAGTTCCCCTTATCGGAGTTCATTCAATGAGGGTGGTTCCCATTGCTCCGACACCAGTTCTCAGCGGACCCCGGCGATGTTGTTTCCGGGCAGGACTAAAGAGATGGAGGAGAATGAAGACAGTTACATTGGGTGGATTGTGAAGAAAAGGGTCTTCATTGAGTGGATTGCTTTTCTGTGCATTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0008219 GO:0008381 GO:0009581 GO:0009582 GO:0009605 GO:0009612 GO:0009628 GO:0009987 GO:0010150 GO:0012501 GO:0015267 GO:0016020 GO:0022803 GO:0022836 GO:0022857 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0036473 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0050982 GO:0051179 GO:0051234 GO:0051606 GO:0051716 GO:0055085 GO:0070887 GO:0071944 GO:0080167 GO:0090693 GO:0097468 GO:0099402 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

145

Amino Acids

16.03

Weight (kDa)

5.43

Isoelectric Point (pI)

60.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681
rosa_laevigata	RLG00000003527 RLG00000029960
rosa_multiflora	Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049
rosa_roxburghii	Rroxscaffold_6G00429930
rosa_samantha	Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AciI	CCGC	1 cut(s)	313
AcyI	GRCGYC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	189, 261
AgsI	TTSAA	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	224
AleI	CACNNNNGTG	1 cut(s)	243
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	83, 215
Alw44I	GTGCAC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	235
AseI	ATTAAT	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	315
AsuC2I	CCSGG	2 cut(s)	320, 336
AsuHPI	GGTGA	2 cut(s)	44, 108
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	372, 394
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	320, 336
BcoDI	GTCTC	2 cut(s)	83, 215
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	2 cut(s)	189, 225
BfmI	CTRYAG	1 cut(s)	434
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	320, 336
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	286, 317
BmrFI	CCNGG	2 cut(s)	320, 336
BpiI	GAAGAC	2 cut(s)	372, 394
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	2 cut(s)	320, 336
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 261
Bse1I	ACTGG	1 cut(s)	303
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	189, 261
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	78, 323
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	247
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	320, 335
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	189, 261
BsmAI	GTCTC	2 cut(s)	83, 215
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	65
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	79, 322
BspLI	GGNNCC	2 cut(s)	286, 317
BspT104I	TTCGAA	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	7, 371
BstACI	GRCGYC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	71
BstDEI	CTNAG	2 cut(s)	87, 309
BstMAI	GTCTC	2 cut(s)	83, 215
BstSCI	CCNGG	2 cut(s)	318, 334
BstSFI	CTRYAG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	2 cut(s)	372, 394
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	63, 63
Cfr13I	GGNCC	1 cut(s)	315
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviJI	RGCY	3 cut(s)	50, 108, 193
CviKI_1	RGCY	3 cut(s)	50, 108, 193
DdeI	CTNAG	2 cut(s)	87, 309
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	83
FalI	AAGNNNNNCTT	2 cut(s)	241, 273
FaqI	GGGAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	189, 225
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	320, 335
Hin1I	GRCGYC	1 cut(s)	92
HinfI	GANTC	3 cut(s)	20, 68, 132
HpaII	CCGG	2 cut(s)	320, 335
HphI	GGTGA	2 cut(s)	44, 108
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	4 cut(s)	28, 169, 264, 298
Hpy188III	TCNNGA	1 cut(s)	129
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	7, 371
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	3 cut(s)	63, 248, 429
HpyF3I	CTNAG	2 cut(s)	87, 309
HpySE526I	ACGT	1 cut(s)	92
Hsp92I	GRCGYC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	232, 299
LpnPI	CCDG	8 cut(s)	81, 99, 114, 132, 316, 325, 333, 348
Lsp1109I	GCAGC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	189, 225
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	371
MboII	GAAGA	3 cut(s)	377, 394, 403
MhlI	GDGCHC	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	3 cut(s)	138, 271, 349
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	2 cut(s)	320, 335
MspR9I	CCNGG	2 cut(s)	320, 336
Mva1269I	GAATGC	1 cut(s)	429
NciI	CCSGG	2 cut(s)	320, 336
NlaIV	GGNNCC	2 cut(s)	286, 317
NspV	TTCGAA	1 cut(s)	71
OliI	CACNNNNGTG	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	50
PctI	GAATGC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	68, 132
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PshBI	ATTAAT	1 cut(s)	155
PspN4I	GGNNCC	2 cut(s)	286, 317
PspPI	GGNCC	1 cut(s)	315
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	236
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	320, 336
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	34, 95, 100, 121, 167
SfcI	CTRYAG	1 cut(s)	434
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	315
SmiMI	CAYNNNNRTG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	224
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	189, 225
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	318, 334
TaaI	ACNGT	2 cut(s)	7, 371
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	71, 198
TfiI	GAWTC	2 cut(s)	68, 132
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TscAI	CASTG	2 cut(s)	63, 70
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	3 cut(s)	258, 378, 394
TspRI	CASTG	2 cut(s)	63, 70
VneI	GTGCAC	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	315
VspI	ATTAAT	1 cut(s)	155
XspI	CTAG	2 cut(s)	189, 225
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.