Branched-chain-amino-acid aminotransferase-like protein 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0146631 RchiOBHm_Chr6g0277681 |
| rosa_laevigata | RLG00000003527 RLG00000029960 |
| rosa_multiflora | Rmu_sc0000929.1_g000001 Rmu_sc0004283.1_g000049 |
| rosa_roxburghii | Rroxscaffold_6G00429930 |
| rosa_samantha | Rh1CG108200 Rh1DG018100 Rh1DG116800 Rh2AG243000 Rh2AG244600 Rh2BG256900 Rh2DG251500 Rh2DG253200 Rh5AG168100 Rh6DG217900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 173 |
| AgsI | TTSAA | 4 cut(s) | 73, 95, 217, 224 |
| AluBI | AGCT | 4 cut(s) | 100, 185, 208, 220 |
| AluI | AGCT | 4 cut(s) | 100, 185, 208, 220 |
| AlwI | GGATC | 1 cut(s) | 173 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| AseI | ATTAAT | 1 cut(s) | 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 99 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 27 |
| BfaI | CTAG | 1 cut(s) | 305 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| BpuEI | CTTGAG | 1 cut(s) | 259 |
| Bse3DI | GCAATG | 1 cut(s) | 247 |
| BseMI | GCAATG | 1 cut(s) | 247 |
| BseMII | CTCAG | 2 cut(s) | 75, 200 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BseYI | CCCAGC | 1 cut(s) | 139 |
| Bsp143I | GATC | 2 cut(s) | 178, 307 |
| BspCNI | CTCAG | 2 cut(s) | 76, 201 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspPI | GGATC | 1 cut(s) | 173 |
| BsrDI | GCAATG | 1 cut(s) | 247 |
| BssMI | GATC | 2 cut(s) | 178, 307 |
| BstDEI | CTNAG | 3 cut(s) | 84, 209, 321 |
| BstKTI | GATC | 2 cut(s) | 181, 310 |
| BstMBI | GATC | 2 cut(s) | 178, 307 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 97 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CviAII | CATG | 3 cut(s) | 65, 104, 145 |
| CviJI | RGCY | 6 cut(s) | 7, 100, 143, 185, 208, 220 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 100, 143, 185, 208, 220 |
| DdeI | CTNAG | 3 cut(s) | 84, 209, 321 |
| DpnI | GATC | 2 cut(s) | 180, 309 |
| DpnII | GATC | 2 cut(s) | 178, 307 |
| FaeI | CATG | 3 cut(s) | 68, 107, 148 |
| FaiI | YATR | 7 cut(s) | 66, 105, 136, 146, 235, 237, 260 |
| FatI | CATG | 3 cut(s) | 64, 103, 144 |
| FauNDI | CATATG | 1 cut(s) | 235 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| FspBI | CTAG | 1 cut(s) | 305 |
| GluI | GCNGC | 1 cut(s) | 5 |
| GsaI | CCCAGC | 1 cut(s) | 143 |
| Hin1II | CATG | 3 cut(s) | 68, 107, 148 |
| HindIII | AAGCTT | 2 cut(s) | 98, 218 |
| HinfI | GANTC | 2 cut(s) | 26, 168 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy188I | TCNGA | 1 cut(s) | 85 |
| Hpy188III | TCNNGA | 5 cut(s) | 104, 176, 287, 305, 311 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 97 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 209, 321 |
| Hsp92II | CATG | 3 cut(s) | 68, 107, 148 |
| Kzo9I | GATC | 2 cut(s) | 178, 307 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 7 cut(s) | 7, 21, 153, 166, 195, 251, 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| MaeI | CTAG | 1 cut(s) | 305 |
| MalI | GATC | 2 cut(s) | 180, 309 |
| MboI | GATC | 2 cut(s) | 178, 307 |
| MboII | GAAGA | 2 cut(s) | 205, 273 |
| MluCI | AATT | 1 cut(s) | 198 |
| MmeI | TCCRAC | 1 cut(s) | 19 |
| MnlI | CCTC | 2 cut(s) | 28, 43 |
| MroXI | GAANNNNTTC | 1 cut(s) | 99 |
| MseI | TTAA | 2 cut(s) | 57, 159 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 97 |
| NdeI | CATATG | 1 cut(s) | 235 |
| NdeII | GATC | 2 cut(s) | 178, 307 |
| NlaIII | CATG | 3 cut(s) | 68, 107, 148 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PdmI | GAANNNNTTC | 1 cut(s) | 99 |
| PfeI | GAWTC | 2 cut(s) | 26, 168 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PshBI | ATTAAT | 1 cut(s) | 159 |
| PspFI | CCCAGC | 1 cut(s) | 139 |
| SaqAI | TTAA | 2 cut(s) | 57, 159 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 2 cut(s) | 178, 307 |
| SetI | ASST | 7 cut(s) | 39, 63, 102, 187, 210, 222, 322 |
| SmlI | CTYRAG | 1 cut(s) | 274 |
| SmoI | CTYRAG | 1 cut(s) | 274 |
| Sse9I | AATT | 1 cut(s) | 198 |
| SspMI | CTAG | 1 cut(s) | 305 |
| TaqI | TCGA | 2 cut(s) | 13, 48 |
| TasI | AATT | 1 cut(s) | 198 |
| TfiI | GAWTC | 2 cut(s) | 26, 168 |
| Tru1I | TTAA | 2 cut(s) | 57, 159 |
| Tru9I | TTAA | 2 cut(s) | 57, 159 |
| TseI | GCWGC | 1 cut(s) | 4 |
| TspDTI | ATGAA | 5 cut(s) | 18, 53, 92, 206, 237 |
| VspI | ATTAAT | 1 cut(s) | 159 |
| XbaI | TCTAGA | 1 cut(s) | 304 |
| XmnI | GAANNNNTTC | 1 cut(s) | 99 |
| XspI | CTAG | 1 cut(s) | 305 |