Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Reverse (-)

60345309 .. 60352966

Gene Structure 7658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGGCGAGGCAGTGGACTCTTTTCCTACGAAGCCGACGACTAGTTCAGTGACGATCGGCTCGTCGCTGATTCCGATAATCAACAAGCTGCAGGACATTCTGGCTCCCGTAGCCGTAGGCAGCGAATTGTCGAAGATTTCGCTGCCGCAAGTGGCCGTCGTGGGAAGCCAAAGCAGCGGCAAATCCAGCGTCCTCGAGGCGCTCGTCGGCCGTGACTTCCTCCCTCGCGGCTGCGATATTTGCACTCGTAGACCTCTCGTGTTGATGCTCGAGAATCGCCCGCCCAATCCCGCCCAAGATGCCGCCCAAACCGAGTGGGGCGAGTTTCGGCATTTGCCTGGAAAGCGCTTCTACGACTTCACCAGCATTCGCCGAGAGATTCAGGCTGAGACCGAAAGAGAGGCAGGATTGAACAAAGGCGTTTCGGATAAACAAATTCGGCTCAAGATTACCTCTCCGAATGTGCTTAATATGACGCTTGTTGATTTGCCTGGCATCACTAAGGTTCCGGTGGGAGATCAACCTAGTGACATAGAATCAAGGATCAGGAAGATGATAATGGGACATATTAGGCAAGAAAATTGCATTATATTGGCAGTTACTCCTGCCAACGCTGATTTAGCCACCTCTGATGCACTGCAACTCGCTAGAGAAGCTGACCCTACTGGTTTTCGTACCATTGGTGTCATCACCAAGCTTGATATAATGGACAGGGGCACCGATGCCAGCAACTTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTTGGTTATGTTGGTGTTGTCAACCGTTGTCAGGAGGACATCAATAAAAACCGTAGCATTGCTGCAGCACTTGCTTATGAGGACAAATTCTTCCGTGATAATCCAGTATATAGCAGTCTCTCTGATCGTTGCGGCATTCCCCAGTTAGCAAGGAAACTGAATCAGATTCTGGAGCACCATATCAGGATTGTTCTCCCTGGTTTGAAGGCTGAGTTGAATTCTCAGATGAATGCTATTTATAAAGAACTGCAAACATATGGAAAAGTTATGGAATCCAAAACAGATCTGGGAGCAACTTTGTTGAACATTTTGTCAAAATACTGTGAAGCTTTCACTGCCATGTTGGATGGAAAAAATCCGGAGATGTCAACTAAAGAATTGTCAGGAGGAGCCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAAAGCTTGCAGGAAGTAGATCCCTGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTTAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAAATGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATCGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATATAAACACTTCGCACCCAAATTTTTTAGGTGGGAGCAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTTCTCGGGTGGCTCAGGCAAAGATTGGACAATTACCAAATCAGGGAAGTCGTTCACAGCTGAATAACAATAAACCTGTATCTGGAGGTTCTACAAGGACTTGGACTCTTCCATTATTATTTGGGAATTGGACATCGTCTGGAGGCTCCCTGGATAGCAGATCTTTTGGTGAACAGAACCATTCACAATCGATGCCCCCTGTAATCCAATTGAGAGAGCCCCCATCCATCTTAAGGCCAGTTGAAGCGACAGAGCATAAAGCAGTGGAAATTATTGTAACCAAATTACTCCTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTCAATCTTACAAAACGGACCCTTCATCGAACCTTCATTCAAAAGTTGTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGGAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTTTGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

782

Amino Acids

87.26

Weight (kDa)

7.23

Isoelectric Point (pI)

51.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 233	8.8e-54	Dynamin family
Dynamin_M	PF01031	241 - 526	4.2e-105	Dynamin central region
GED	PF02212	636 - 725	3.5e-23	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AbsI	CCTCGAGG	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	1120
AciI	CCGC	8 cut(s)	146, 177, 228, 281, 291, 303, 894, 1939
AclWI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AcoI	YGGCCR	3 cut(s)	153, 208, 1245
AcsI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
AcuI	CTGAAG	2 cut(s)	1334, 1656
AfaI	GTAC	3 cut(s)	676, 1166, 2057
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
AflII	CTTAAG	2 cut(s)	758, 1876
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	5 cut(s)	337, 490, 958, 1154, 1794
AluBI	AGCT	9 cut(s)	88, 656, 697, 763, 1091, 1194, 1574, 1705, 2345
AluI	AGCT	9 cut(s)	88, 656, 697, 763, 1091, 1194, 1574, 1705, 2345
Alw21I	GWGCWC	2 cut(s)	939, 1483
Alw26I	GTCTC	3 cut(s)	383, 884, 2191
Alw44I	GTGCAC	1 cut(s)	1479
AlwI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AlwNI	CAGNNNCTG	2 cut(s)	931, 2164
Ama87I	CYCGRG	4 cut(s)	194, 269, 740, 1650
Aor13HI	TCCGGA	1 cut(s)	1120
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	4 cut(s)	153, 208, 1245, 1880
ApaLI	GTGCAC	1 cut(s)	1479
ApeKI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 824, 827, 1574
ApoI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	1696
AspLEI	GCGC	2 cut(s)	202, 348
AspS9I	GGNCC	2 cut(s)	1294, 2025
AsuHPI	GGTGA	6 cut(s)	352, 682, 1596, 1826, 2244, 2297
AsuII	TTCGAA	1 cut(s)	1240
AvaI	CYCGRG	4 cut(s)	194, 269, 740, 1650
AvaII	GGWCC	2 cut(s)	1294, 2025
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	2 cut(s)	719, 1483
BamHI	GGATCC	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	1866
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	1324, 1349
Bbv12I	GWGCWC	2 cut(s)	939, 1483
BbvI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
BccI	CCATC	5 cut(s)	1103, 1513, 1876, 1880, 2268
BceAI	ACGGC	4 cut(s)	98, 140, 195, 1260
BciT130I	CCWGG	5 cut(s)	339, 492, 960, 1156, 1796
BcoDI	GTCTC	3 cut(s)	383, 884, 2191
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	4 cut(s)	42, 525, 648, 2301
BfmI	CTRYAG	3 cut(s)	89, 825, 2340
BfoI	RGCGCY	2 cut(s)	203, 349
BfrI	CTTAAG	2 cut(s)	758, 1876
BglII	AGATCT	3 cut(s)	1045, 1805, 1975
Bme1390I	CCNGG	5 cut(s)	339, 492, 960, 1156, 1796
Bme18I	GGWCC	2 cut(s)	1294, 2025
BmeT110I	CYCGRG	4 cut(s)	194, 269, 740, 1650
BmgT120I	GGNCC	2 cut(s)	1294, 2025
BmiI	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1792, 2027
BmrFI	CCNGG	5 cut(s)	339, 492, 960, 1156, 1796
BmrI	ACTGGG	1 cut(s)	898
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	2 cut(s)	1324, 1349
BpmI	CTGGAG	5 cut(s)	953, 1749, 1806, 2186, 2302
Bpu10I	CCTNAGC	1 cut(s)	1659
Bpu14I	TTCGAA	1 cut(s)	1240
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	1835
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	2 cut(s)	958, 1794
BsaWI	WCCGGW	2 cut(s)	508, 1120
Bsc4I	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	1120
BseBI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1796
BseCI	ATCGAT	1 cut(s)	1835
BseDI	CCNNGG	2 cut(s)	958, 1794
BseGI	GGATG	6 cut(s)	1114, 1453, 1636, 1868, 2101, 2189
BseLI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	7 cut(s)	378, 963, 998, 1281, 1482, 1569, 1673
BseRI	GAGGAG	1 cut(s)	1164
BseSI	GKGCMC	2 cut(s)	719, 1483
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	2 cut(s)	57, 211
BshFI	GGCC	4 cut(s)	155, 210, 1247, 1882
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	1835
BsiEI	CGRYCG	2 cut(s)	57, 211
BsiHKAI	GWGCWC	2 cut(s)	939, 1483
BsiHKCI	CYCGRG	4 cut(s)	194, 269, 740, 1650
BsiSI	CCGG	2 cut(s)	509, 1121
BslFI	GGGAC	2 cut(s)	576, 1280
BslI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
BsmAI	GTCTC	3 cut(s)	383, 884, 2191
BsmFI	GGGAC	2 cut(s)	576, 1280
BsmI	GAATGC	4 cut(s)	366, 897, 997, 1443
BsnI	GGCC	4 cut(s)	155, 210, 1247, 1882
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	4 cut(s)	194, 269, 740, 1650
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp1286I	GDGCHC	4 cut(s)	719, 939, 1483, 1866
Bsp13I	TCCGGA	1 cut(s)	1120
Bsp1407I	TGTACA	1 cut(s)	2055
BspACI	CCGC	8 cut(s)	146, 177, 228, 281, 291, 303, 894, 1939
BspANI	GGCC	4 cut(s)	155, 210, 1247, 1882
BspCNI	CTCAG	7 cut(s)	379, 964, 997, 1282, 1483, 1570, 1672
BspDI	ATCGAT	1 cut(s)	1835
BspEI	TCCGGA	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1792, 2027
BspMAI	CTGCAG	2 cut(s)	93, 829
BspPI	GGATC	4 cut(s)	551, 1153, 1166, 1202
BspT104I	TTCGAA	1 cut(s)	1240
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	2 cut(s)	758, 1876
BspTNI	GGTCTC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	2055
BssECI	CCNNGG	2 cut(s)	958, 1794
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1796
Bst4CI	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
Bst6I	CTCTTC	1 cut(s)	1758
BstAFI	CTTAAG	2 cut(s)	758, 1876
BstAPI	GCANNNNNTGC	4 cut(s)	833, 1265, 1274, 1487
BstAUI	TGTACA	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	1240
BstC8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
BstDEI	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1491, 1578, 1659
BstF5I	GGATG	6 cut(s)	1114, 1453, 1636, 1868, 2101, 2189
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	2 cut(s)	203, 349
BstHHI	GCGC	2 cut(s)	202, 348
BstMAI	GTCTC	3 cut(s)	383, 884, 2191
BstMCI	CGRYCG	2 cut(s)	57, 211
BstNI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1796
BstSCI	CCNGG	5 cut(s)	337, 490, 958, 1154, 1794
BstSFI	CTRYAG	3 cut(s)	89, 825, 2340
BstSLI	GKGCMC	2 cut(s)	719, 1483
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
BstV2I	GAAGAC	2 cut(s)	1324, 1349
BstX2I	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
BstYI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	1835
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuRI	GGCC	4 cut(s)	155, 210, 1247, 1882
BsuTUI	ATCGAT	1 cut(s)	1835
BtsCI	GGATG	6 cut(s)	1114, 1453, 1636, 1868, 2101, 2189
BtsI	GCAGTG	4 cut(s)	18, 635, 1095, 1914
BtsIMutI	CAGTG	9 cut(s)	18, 54, 635, 1095, 1358, 1914, 2162, 2223, 2287
Cac8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
CaiI	CAGNNNCTG	2 cut(s)	931, 2164
CfoI	GCGC	2 cut(s)	202, 348
Cfr13I	GGNCC	2 cut(s)	1294, 2025
ClaI	ATCGAT	1 cut(s)	1835
CseI	GACGC	2 cut(s)	178, 484
Csp6I	GTAC	3 cut(s)	675, 1165, 2056
CspCI	CAANNNNNGTGG	2 cut(s)	296, 331
CviAII	CATG	2 cut(s)	1102, 1592
CviQI	GTAC	3 cut(s)	675, 1165, 2056
DdeI	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1491, 1578, 1659
EaeI	YGGCCR	3 cut(s)	153, 208, 1245
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	1758
EarI	CTCTTC	1 cut(s)	1758
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	1866
Eco31I	GGTCTC	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	1614
Eco47I	GGWCC	2 cut(s)	1294, 2025
Eco47III	AGCGCT	1 cut(s)	347
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	1334, 1656
Eco81I	CCTNAGG	1 cut(s)	1290
Eco88I	CYCGRG	4 cut(s)	194, 269, 740, 1650
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	5 cut(s)	337, 490, 958, 1154, 1794
EcoRV	GATATC	1 cut(s)	1614
EcoT22I	ATGCAT	2 cut(s)	1261, 1593
EcoT38I	GRGCYC	1 cut(s)	1866
FaeI	CATG	2 cut(s)	1105, 1595
FalI	AAGNNNNNCTT	2 cut(s)	1261, 1293
FaqI	GGGAC	2 cut(s)	576, 1280
FatI	CATG	2 cut(s)	1101, 1591
FauI	CCCGC	2 cut(s)	288, 298
FauNDI	CATATG	1 cut(s)	1018
FblI	GTMKAC	1 cut(s)	250
FokI	GGATG	6 cut(s)	1121, 1460, 1643, 1855, 2108, 2176
FriOI	GRGCYC	1 cut(s)	1866
FspBI	CTAG	4 cut(s)	42, 525, 648, 2301
GlaI	GCGC	2 cut(s)	201, 347
GsuI	CTGGAG	5 cut(s)	953, 1749, 1806, 2186, 2302
HaeII	RGCGCY	2 cut(s)	203, 349
HaeIII	GGCC	4 cut(s)	155, 210, 1247, 1882
HapII	CCGG	2 cut(s)	509, 1121
HgaI	GACGC	2 cut(s)	178, 484
HhaI	GCGC	2 cut(s)	202, 348
Hin1II	CATG	2 cut(s)	1105, 1595
Hin6I	GCGC	2 cut(s)	200, 346
HinP1I	GCGC	2 cut(s)	200, 346
HincII	GTYRAC	2 cut(s)	784, 1131
HindII	GTYRAC	2 cut(s)	784, 1131
HindIII	AAGCTT	4 cut(s)	695, 761, 1089, 1192
HpaII	CCGG	2 cut(s)	509, 1121
HphI	GGTGA	6 cut(s)	352, 682, 1596, 1826, 2244, 2297
Hpy166II	GTNNAC	8 cut(s)	16, 251, 784, 1131, 1462, 1481, 1700, 1817
Hpy188I	TCNGA	9 cut(s)	75, 427, 459, 631, 886, 927, 987, 1961, 2138
Hpy8I	GTNNAC	8 cut(s)	16, 251, 784, 1131, 1462, 1481, 1700, 1817
Hpy99I	CGWCG	4 cut(s)	40, 67, 161, 209
HpyAV	CCTTC	4 cut(s)	961, 1358, 2039, 2050
HpyCH4III	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
HpyF3I	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1491, 1578, 1659
Hsp92II	CATG	2 cut(s)	1105, 1595
HspAI	GCGC	2 cut(s)	200, 346
Kpn2I	TCCGGA	1 cut(s)	1120
LmnI	GCTCC	8 cut(s)	109, 934, 1052, 1151, 1566, 1796, 2089, 2139
Lsp1109I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
MaeI	CTAG	4 cut(s)	42, 525, 648, 2301
MaeIII	GTNAC	8 cut(s)	49, 212, 527, 598, 1222, 1472, 1921, 2329
MboII	GAAGA	7 cut(s)	145, 562, 844, 1329, 1349, 1745, 2087
MfeI	CAATTG	1 cut(s)	1853
MflI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
MhlI	GDGCHC	4 cut(s)	719, 939, 1483, 1866
MlyI	GAGTC	3 cut(s)	11, 1744, 2302
MmeI	TCCRAC	1 cut(s)	1086
Mph1103I	ATGCAT	2 cut(s)	1261, 1593
MroI	TCCGGA	1 cut(s)	1120
MroXI	GAANNNNTTC	1 cut(s)	1696
MseI	TTAA	4 cut(s)	468, 759, 1383, 1877
MslI	CAYNNNNRTG	1 cut(s)	1100
MspA1I	CMGCKG	2 cut(s)	177, 1705
MspCI	CTTAAG	2 cut(s)	758, 1876
MspI	CCGG	2 cut(s)	509, 1121
MspR9I	CCNGG	5 cut(s)	339, 492, 960, 1156, 1796
MunI	CAATTG	1 cut(s)	1853
Mva1269I	GAATGC	4 cut(s)	366, 897, 997, 1443
MvaI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1796
MvnI	CGCG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	1018
NlaIII	CATG	2 cut(s)	1105, 1595
NlaIV	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1792, 2027
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	4 cut(s)	49, 212, 527, 1472
NsiI	ATGCAT	2 cut(s)	1261, 1593
NspV	TTCGAA	1 cut(s)	1240
PaeR7I	CTCGAG	2 cut(s)	194, 269
PcsI	WCGNNNNNNNCGW	4 cut(s)	35, 59, 71, 201
PctI	GAATGC	4 cut(s)	366, 897, 997, 1443
PdmI	GAANNNNTTC	1 cut(s)	1696
PfeI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
PflFI	GACNNNGTC	2 cut(s)	1780, 1955
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	3 cut(s)	11, 1744, 2301
PpsI	GAGTC	3 cut(s)	11, 1744, 2301
PpuMI	RGGWCCY	1 cut(s)	1294
PsiI	TTATAA	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	5 cut(s)	337, 490, 958, 1154, 1794
PspGI	CCWGG	5 cut(s)	337, 490, 958, 1154, 1794
PspN4I	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1792, 2027
PspPI	GGNCC	2 cut(s)	1294, 2025
PspPPI	RGGWCCY	1 cut(s)	1294
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	93, 829
PstNI	CAGNNNCTG	2 cut(s)	931, 2164
PsuI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
PsyI	GACNNNGTC	2 cut(s)	1780, 1955
PvuI	CGATCG	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	1705
RsaI	GTAC	3 cut(s)	676, 1166, 2057
RsaNI	GTAC	3 cut(s)	675, 1165, 2056
RseI	CAYNNNNRTG	1 cut(s)	1100
SaqAI	TTAA	4 cut(s)	468, 759, 1383, 1877
Sau96I	GGNCC	2 cut(s)	1294, 2025
SchI	GAGTC	3 cut(s)	11, 1744, 2302
ScrFI	CCNGG	5 cut(s)	339, 492, 960, 1156, 1796
SduI	GDGCHC	4 cut(s)	719, 939, 1483, 1866
SfcI	CTRYAG	3 cut(s)	89, 825, 2340
Sfr274I	CTCGAG	2 cut(s)	194, 269
SfuI	TTCGAA	1 cut(s)	1240
SinI	GGWCC	2 cut(s)	1294, 2025
SlaI	CTCGAG	2 cut(s)	194, 269
SmiMI	CAYNNNNRTG	1 cut(s)	1100
SmlI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1876
SmoI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1876
SpeI	ACTAGT	1 cut(s)	41
SsiI	CCGC	8 cut(s)	146, 177, 228, 281, 291, 303, 894, 1939
SspMI	CTAG	4 cut(s)	42, 525, 648, 2301
StyD4I	CCNGG	5 cut(s)	337, 490, 958, 1154, 1794
TaaI	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
TaqI	TCGA	6 cut(s)	131, 195, 270, 1240, 1835, 2035
TaqII	GACCGA	1 cut(s)	407
TatI	WGTACW	2 cut(s)	1164, 2055
TauI	GCSGC	5 cut(s)	148, 180, 231, 305, 897
TfiI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
Tru1I	TTAA	4 cut(s)	468, 759, 1383, 1877
Tru9I	TTAA	4 cut(s)	468, 759, 1383, 1877
TscAI	CASTG	9 cut(s)	18, 54, 642, 1102, 1358, 1914, 2169, 2230, 2287
TseFI	GTSAC	4 cut(s)	49, 212, 527, 1472
TseI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 824, 827, 1574
Tsp45I	GTSAC	4 cut(s)	49, 212, 527, 1472
TspDTI	ATGAA	5 cut(s)	1004, 1464, 2021, 2032, 2301
TspGWI	ACGGA	3 cut(s)	845, 1643, 2038
TspRI	CASTG	9 cut(s)	18, 54, 642, 1102, 1358, 1914, 2169, 2230, 2287
Tth111I	GACNNNGTC	2 cut(s)	1780, 1955
Vha464I	CTTAAG	2 cut(s)	758, 1876
VneI	GTGCAC	1 cut(s)	1479
VpaK11BI	GGWCC	2 cut(s)	1294, 2025
XapI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
XbaI	TCTAGA	1 cut(s)	2300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XhoI	CTCGAG	2 cut(s)	194, 269
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	1696
XspI	CTAG	4 cut(s)	42, 525, 648, 2301
Zsp2I	ATGCAT	2 cut(s)	1261, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.