Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Forward (+)

9572372 .. 9579841

Gene Structure 7470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGGCGAGGCCGTGGACTCTTTTCCTACGAAGCCGACGACTAGTTCAGTGACGATCGGCTCGTCGCTGATTCCGATGATCAACAAGCTGCAGGACATTCTTGCTCCCGTAGCCGTAGGCAGCGAATTGTCGAAGATTTCGCTGCCGCAAGTGGCGGTTGTGGGAAGCCAAAGCAGCGGCAAATCCAGCGTCCTCGAGGCGCTCGTCGGCCGTGACTTCCTCCCTCGCGGCTGCGATATTTGCACTCGTAGACCTCTCGTCTTGATGCTCGAGAATCGCCCGCCCAATACCGCCCAAGATGCCGCCCTAACCGAGTGGGGCGAGTTTCGACATTTGCCTGGAAAGCGCTTCTACGACTTCACCAGCATTCGCCTGGAGATTCAGGCTGAGACTGAAAGAGAAGCAGGATTGAACAGAGGGGTTTCGGATAAACAAATTCGGCTTAAGATTACCTCTCCGAATGTCCTTAATATGACTCTTGTAGATTTGCCTGGCATCACTAAGGTTCCGGTGGGTGATCAACCTAGTGACATAGAATCAAGGATCAGGAAGATGATAATGGGACATATTAGGCAAGAAAATTGCATTATATTGGCAGTTACTCCTGCCAACGCTGATTTAGCCACCTCTGATGCACTTCAACTCGCTAGAGAAGCTGACCCTACTGGTTTTCGTACCATTGGTGTCATCACCAAGCTTGATATAATGGACAGGGGCACCGACGCCAGCAACTTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTCGGTTATGTTGGTGTTGTCAACCGTTGTCAGGAGGACATCAATAAAAACCGTAGCATTGCTGCAGCACTTGCTTATGAGGACAAATTCTTCCGTGATAATCCAGTATATAGCAGTCTCTCTGATCGTTGCGGCATTCCCCAGTTAGCAAAGAAACTGAATCAGATTCTGGAGCACCATATCAGGATTGTTCTCCCTGGTTTGAAGGCTGAGTTGAATTCTCAGATGAATGCTATTTATAAAGAATTACAAACATATGGAAAAGTGATGGAATCCAAAACAGATCTGGGAGCAACTTTGTTGAACATTTTGTCAAAATACTGTGAAGCTTTTACTGCCATGTTGGATGGAAAAAATCCGGAGATGTCAACTAAAGAATTGTCAGGAGGAGCCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAGAGCTTGCAGGAAGTAGATCCCTGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTTAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGATTAAGATTAGTCGCACTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGTATTAAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATATAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGACGCTGAAGCCCAAACTTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGGAAGTTGTTCACAGCTGAATAACAATAAACCTGTATCTGGAGGTTCTACAAGGACTTGGACTCTTCCATTATTATTTGGGAATTGGACATCGTCTGGAGGCTCCCTGGATAGCAGATCTTTTGGTGAACAAAACTATTCACAATCGATGCCCTCTGTAATCCAATTGAGAGAGCCCCCATCCATCTTAAGGCCAGTTGAAGTGACAGAGCATAAAGCAGTGGAAATTATTGTAACCAAATTACTCCTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTAAATCTTACAAAACGGACCCTTCATCGAACCTTCATTCAAAAATTGTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGAAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTTTGCAGACACTGGAGAAAGTTGAATTTGATTTCTCATCTCATACTTCAAGTTTTGGAAATGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

783

Amino Acids

87.35

Weight (kDa)

6.92

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 233	1.4e-52	Dynamin family
Dynamin_M	PF01031	241 - 526	3.6e-105	Dynamin central region
GED	PF02212	636 - 725	3.5e-23	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AbsI	CCTCGAGG	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	1120
AciI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1939
AclWI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AcoI	YGGCCR	2 cut(s)	208, 1245
AcsI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
AcuI	CTGAAG	2 cut(s)	1334, 1656
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	3 cut(s)	676, 1166, 2057
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
AflII	CTTAAG	3 cut(s)	443, 758, 1876
AhdI	GACNNNNNGTC	1 cut(s)	257
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
AluBI	AGCT	9 cut(s)	88, 656, 697, 763, 1091, 1194, 1574, 1705, 2345
AluI	AGCT	9 cut(s)	88, 656, 697, 763, 1091, 1194, 1574, 1705, 2345
Alw21I	GWGCWC	2 cut(s)	939, 1483
Alw26I	GTCTC	2 cut(s)	383, 884
Alw44I	GTGCAC	1 cut(s)	1479
AlwI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AlwNI	CAGNNNCTG	2 cut(s)	931, 2164
Ama87I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
Aor13HI	TCCGGA	1 cut(s)	1120
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	4 cut(s)	9, 208, 1245, 1880
ApaLI	GTGCAC	1 cut(s)	1479
ApeKI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 824, 827, 1574
ApoI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	1696
AspLEI	GCGC	2 cut(s)	202, 348
AspS9I	GGNCC	2 cut(s)	1294, 2025
AsuHPI	GGTGA	7 cut(s)	352, 527, 682, 1596, 1826, 2244, 2297
AsuII	TTCGAA	1 cut(s)	1240
AvaI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
AvaII	GGWCC	2 cut(s)	1294, 2025
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	2 cut(s)	719, 1483
BamHI	GGATCC	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	1866
BbsI	GAAGAC	2 cut(s)	1324, 1349
Bbv12I	GWGCWC	2 cut(s)	939, 1483
BbvI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
BccI	CCATC	6 cut(s)	1024, 1103, 1513, 1876, 1880, 2268
BceAI	ACGGC	3 cut(s)	98, 195, 1260
BciT130I	CCWGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
BclI	TGATCA	2 cut(s)	78, 517
BcoDI	GTCTC	2 cut(s)	383, 884
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	4 cut(s)	42, 525, 648, 2301
BfmI	CTRYAG	3 cut(s)	89, 825, 2340
BfoI	RGCGCY	2 cut(s)	203, 349
BfrI	CTTAAG	3 cut(s)	443, 758, 1876
BglII	AGATCT	3 cut(s)	1045, 1805, 1975
Bme1390I	CCNGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
Bme18I	GGWCC	2 cut(s)	1294, 2025
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmeT110I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
BmgT120I	GGNCC	2 cut(s)	1294, 2025
BmiI	GGNNCC	7 cut(s)	507, 718, 1153, 1160, 1296, 1792, 2027
BmrFI	CCNGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	8 cut(s)	255, 289, 504, 622, 1268, 1827, 2086, 2206
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	2 cut(s)	1324, 1349
BpmI	CTGGAG	6 cut(s)	395, 953, 1749, 1806, 2186, 2302
Bpu14I	TTCGAA	1 cut(s)	1240
Bsa29I	ATCGAT	1 cut(s)	1835
BsaHI	GRCGYC	1 cut(s)	723
BsaJI	CCNNGG	3 cut(s)	12, 958, 1794
BsaWI	WCCGGW	2 cut(s)	508, 1120
Bsc4I	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
Bse1I	ACTGG	9 cut(s)	670, 866, 904, 1162, 1174, 1427, 1883, 2169, 2280
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	1120
BseBI	CCWGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
BseCI	ATCGAT	1 cut(s)	1835
BseDI	CCNNGG	3 cut(s)	12, 958, 1794
BseGI	GGATG	4 cut(s)	1114, 1453, 1868, 2101
BseLI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	7 cut(s)	378, 963, 998, 1281, 1401, 1482, 1569
BseNI	ACTGG	9 cut(s)	670, 866, 904, 1162, 1174, 1427, 1883, 2169, 2280
BseRI	GAGGAG	1 cut(s)	1164
BseSI	GKGCMC	2 cut(s)	719, 1483
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	2 cut(s)	57, 211
BshFI	GGCC	4 cut(s)	11, 210, 1247, 1882
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	1835
BsiEI	CGRYCG	2 cut(s)	57, 211
BsiHKAI	GWGCWC	2 cut(s)	939, 1483
BsiHKCI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
BsiSI	CCGG	2 cut(s)	509, 1121
BslFI	GGGAC	2 cut(s)	576, 1280
BslI	CCNNNNNNNGG	5 cut(s)	793, 1688, 1727, 1878, 2143
BsmAI	GTCTC	2 cut(s)	383, 884
BsmFI	GGGAC	2 cut(s)	576, 1280
BsmI	GAATGC	4 cut(s)	366, 897, 997, 1443
BsnI	GGCC	4 cut(s)	11, 210, 1247, 1882
BsoBI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp1286I	GDGCHC	4 cut(s)	719, 939, 1483, 1866
Bsp13I	TCCGGA	1 cut(s)	1120
Bsp1407I	TGTACA	1 cut(s)	2055
BspACI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1939
BspANI	GGCC	4 cut(s)	11, 210, 1247, 1882
BspCNI	CTCAG	7 cut(s)	379, 964, 997, 1282, 1402, 1483, 1570
BspDI	ATCGAT	1 cut(s)	1835
BspEI	TCCGGA	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	7 cut(s)	507, 718, 1153, 1160, 1296, 1792, 2027
BspMAI	CTGCAG	2 cut(s)	93, 829
BspPI	GGATC	4 cut(s)	551, 1153, 1166, 1202
BspT104I	TTCGAA	1 cut(s)	1240
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	3 cut(s)	443, 758, 1876
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	2055
BsrI	ACTGG	9 cut(s)	670, 866, 904, 1162, 1174, 1427, 1883, 2169, 2280
BssECI	CCNNGG	3 cut(s)	12, 958, 1794
BssNI	GRCGYC	1 cut(s)	723
Bst2UI	CCWGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
Bst4CI	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
Bst6I	CTCTTC	1 cut(s)	1758
BstACI	GRCGYC	1 cut(s)	723
BstAFI	CTTAAG	3 cut(s)	443, 758, 1876
BstAPI	GCANNNNNTGC	4 cut(s)	833, 1265, 1274, 1487
BstAUI	TGTACA	1 cut(s)	2055
BstBI	TTCGAA	1 cut(s)	1240
BstC8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
BstDEI	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1410, 1491, 1578
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	4 cut(s)	1114, 1453, 1868, 2101
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	2 cut(s)	203, 349
BstHHI	GCGC	2 cut(s)	202, 348
BstMAI	GTCTC	2 cut(s)	383, 884
BstMCI	CGRYCG	2 cut(s)	57, 211
BstNI	CCWGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
BstSCI	CCNGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
BstSFI	CTRYAG	3 cut(s)	89, 825, 2340
BstSLI	GKGCMC	2 cut(s)	719, 1483
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
BstV2I	GAAGAC	2 cut(s)	1324, 1349
BstX2I	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
BstYI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	1835
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuRI	GGCC	4 cut(s)	11, 210, 1247, 1882
BsuTUI	ATCGAT	1 cut(s)	1835
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	4 cut(s)	1114, 1453, 1868, 2101
BtsI	GCAGTG	1 cut(s)	1914
BtsIMutI	CAGTG	6 cut(s)	54, 1358, 1914, 2162, 2223, 2287
Cac8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
CaiI	CAGNNNCTG	2 cut(s)	931, 2164
CfoI	GCGC	2 cut(s)	202, 348
Cfr13I	GGNCC	2 cut(s)	1294, 2025
ClaI	ATCGAT	1 cut(s)	1835
CseI	GACGC	3 cut(s)	178, 731, 1640
Csp6I	GTAC	3 cut(s)	675, 1165, 2056
CviAII	CATG	3 cut(s)	1102, 1456, 1592
CviQI	GTAC	3 cut(s)	675, 1165, 2056
DdeI	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1410, 1491, 1578
DriI	GACNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	208, 1245
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	1758
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	1758
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	1866
Eco32I	GATATC	1 cut(s)	1614
Eco47I	GGWCC	2 cut(s)	1294, 2025
Eco47III	AGCGCT	1 cut(s)	347
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	1334, 1656
Eco81I	CCTNAGG	1 cut(s)	1290
Eco88I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
EcoRV	GATATC	1 cut(s)	1614
EcoT22I	ATGCAT	2 cut(s)	1261, 1593
EcoT38I	GRGCYC	1 cut(s)	1866
FaeI	CATG	3 cut(s)	1105, 1459, 1595
FalI	AAGNNNNNCTT	2 cut(s)	1261, 1293
FaqI	GGGAC	2 cut(s)	576, 1280
FatI	CATG	3 cut(s)	1101, 1455, 1591
FauI	CCCGC	1 cut(s)	288
FauNDI	CATATG	1 cut(s)	1018
FbaI	TGATCA	2 cut(s)	78, 517
FblI	GTMKAC	1 cut(s)	250
FokI	GGATG	4 cut(s)	1121, 1460, 1855, 2108
FriOI	GRGCYC	1 cut(s)	1866
FspBI	CTAG	4 cut(s)	42, 525, 648, 2301
GlaI	GCGC	2 cut(s)	201, 347
GsuI	CTGGAG	6 cut(s)	395, 953, 1749, 1806, 2186, 2302
HaeII	RGCGCY	2 cut(s)	203, 349
HaeIII	GGCC	4 cut(s)	11, 210, 1247, 1882
HapII	CCGG	2 cut(s)	509, 1121
HgaI	GACGC	3 cut(s)	178, 731, 1640
HhaI	GCGC	2 cut(s)	202, 348
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	3 cut(s)	1105, 1459, 1595
Hin6I	GCGC	2 cut(s)	200, 346
HinP1I	GCGC	2 cut(s)	200, 346
HincII	GTYRAC	2 cut(s)	784, 1131
HindII	GTYRAC	2 cut(s)	784, 1131
HindIII	AAGCTT	2 cut(s)	695, 1089
HpaII	CCGG	2 cut(s)	509, 1121
HphI	GGTGA	7 cut(s)	352, 527, 682, 1596, 1826, 2244, 2297
Hpy166II	GTNNAC	8 cut(s)	16, 251, 784, 1131, 1462, 1481, 1700, 1817
Hpy188I	TCNGA	9 cut(s)	75, 427, 459, 631, 886, 927, 987, 1961, 2138
Hpy8I	GTNNAC	8 cut(s)	16, 251, 784, 1131, 1462, 1481, 1700, 1817
Hpy99I	CGWCG	4 cut(s)	40, 67, 209, 725
HpyAV	CCTTC	4 cut(s)	961, 1358, 2039, 2050
HpyCH4III	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
HpyF3I	CTNAG	8 cut(s)	387, 501, 972, 984, 1290, 1410, 1491, 1578
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	3 cut(s)	1105, 1459, 1595
HspAI	GCGC	2 cut(s)	200, 346
Kpn2I	TCCGGA	1 cut(s)	1120
Ksp22I	TGATCA	2 cut(s)	78, 517
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 811, 839, 1561
LweI	GCATC	8 cut(s)	255, 289, 504, 622, 1268, 1827, 2086, 2206
MaeI	CTAG	4 cut(s)	42, 525, 648, 2301
MboII	GAAGA	7 cut(s)	145, 562, 844, 1329, 1349, 1745, 2087
MfeI	CAATTG	1 cut(s)	1853
MflI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
MhlI	GDGCHC	4 cut(s)	719, 939, 1483, 1866
MlyI	GAGTC	4 cut(s)	11, 469, 1744, 2302
MmeI	TCCRAC	1 cut(s)	1086
Mph1103I	ATGCAT	2 cut(s)	1261, 1593
MroI	TCCGGA	1 cut(s)	1120
MroXI	GAANNNNTTC	1 cut(s)	1696
MseI	TTAA	6 cut(s)	444, 468, 759, 1383, 1433, 1877
MspA1I	CMGCKG	2 cut(s)	177, 1705
MspCI	CTTAAG	3 cut(s)	443, 758, 1876
MspI	CCGG	2 cut(s)	509, 1121
MspR9I	CCNGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
MunI	CAATTG	1 cut(s)	1853
Mva1269I	GAATGC	4 cut(s)	366, 897, 997, 1443
MvaI	CCWGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
MvnI	CGCG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	1018
NlaIII	CATG	3 cut(s)	1105, 1459, 1595
NlaIV	GGNNCC	7 cut(s)	507, 718, 1153, 1160, 1296, 1792, 2027
NmuCI	GTSAC	5 cut(s)	49, 212, 527, 1472, 1891
NsiI	ATGCAT	2 cut(s)	1261, 1593
NspV	TTCGAA	1 cut(s)	1240
PaeR7I	CTCGAG	2 cut(s)	194, 269
PcsI	WCGNNNNNNNCGW	4 cut(s)	35, 59, 71, 201
PctI	GAATGC	4 cut(s)	366, 897, 997, 1443
PdmI	GAANNNNTTC	1 cut(s)	1696
PfeI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
PflFI	GACNNNGTC	2 cut(s)	1780, 1955
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	4 cut(s)	11, 469, 1744, 2301
PpsI	GAGTC	4 cut(s)	11, 469, 1744, 2301
PpuMI	RGGWCCY	1 cut(s)	1294
PsiI	TTATAA	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
PspGI	CCWGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
PspN4I	GGNNCC	7 cut(s)	507, 718, 1153, 1160, 1296, 1792, 2027
PspPI	GGNCC	2 cut(s)	1294, 2025
PspPPI	RGGWCCY	1 cut(s)	1294
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	93, 829
PstNI	CAGNNNCTG	2 cut(s)	931, 2164
PsuI	RGATCY	5 cut(s)	1045, 1158, 1207, 1805, 1975
PsyI	GACNNNGTC	2 cut(s)	1780, 1955
PvuI	CGATCG	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	1705
RsaI	GTAC	3 cut(s)	676, 1166, 2057
RsaNI	GTAC	3 cut(s)	675, 1165, 2056
SaqAI	TTAA	6 cut(s)	444, 468, 759, 1383, 1433, 1877
Sau96I	GGNCC	2 cut(s)	1294, 2025
SchI	GAGTC	4 cut(s)	11, 469, 1744, 2302
ScrFI	CCNGG	6 cut(s)	339, 374, 492, 960, 1156, 1796
SduI	GDGCHC	4 cut(s)	719, 939, 1483, 1866
SfaNI	GCATC	8 cut(s)	255, 289, 504, 622, 1268, 1827, 2086, 2206
SfcI	CTRYAG	3 cut(s)	89, 825, 2340
Sfr274I	CTCGAG	2 cut(s)	194, 269
SfuI	TTCGAA	1 cut(s)	1240
SinI	GGWCC	2 cut(s)	1294, 2025
SlaI	CTCGAG	2 cut(s)	194, 269
SmlI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1876
SmoI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1876
SpeI	ACTAGT	1 cut(s)	41
SsiI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1939
SspMI	CTAG	4 cut(s)	42, 525, 648, 2301
StyD4I	CCNGG	6 cut(s)	337, 372, 490, 958, 1154, 1794
TaaI	ACNGT	5 cut(s)	788, 815, 1085, 1478, 2082
TaqI	TCGA	7 cut(s)	131, 195, 270, 328, 1240, 1835, 2035
TatI	WGTACW	2 cut(s)	1164, 2055
TauI	GCSGC	5 cut(s)	148, 180, 231, 305, 897
TfiI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
Tru1I	TTAA	6 cut(s)	444, 468, 759, 1383, 1433, 1877
Tru9I	TTAA	6 cut(s)	444, 468, 759, 1383, 1433, 1877
TscAI	CASTG	6 cut(s)	54, 1358, 1914, 2169, 2230, 2287
TseFI	GTSAC	5 cut(s)	49, 212, 527, 1472, 1891
TseI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 824, 827, 1574
Tsp45I	GTSAC	5 cut(s)	49, 212, 527, 1472, 1891
TspDTI	ATGAA	5 cut(s)	1004, 1464, 2021, 2032, 2301
TspGWI	ACGGA	3 cut(s)	845, 1643, 2038
TspRI	CASTG	6 cut(s)	54, 1358, 1914, 2169, 2230, 2287
Tth111I	GACNNNGTC	2 cut(s)	1780, 1955
Vha464I	CTTAAG	3 cut(s)	443, 758, 1876
VneI	GTGCAC	1 cut(s)	1479
VpaK11BI	GGWCC	2 cut(s)	1294, 2025
XapI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2177
XbaI	TCTAGA	1 cut(s)	2300
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 1045
XhoI	CTCGAG	2 cut(s)	194, 269
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	1696
XspI	CTAG	4 cut(s)	42, 525, 648, 2301
Zsp2I	ATGCAT	2 cut(s)	1261, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.