Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Reverse (-)

58842150 .. 58849635

Gene Structure 7486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG398200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2427 bp

ATGGGCGAGGCAGTGGACTCTTTTCCTACGAAGCCGACGACCAGTTCAGTGACGATCGGCTCGTCGCTGATTCCGATAATCAACAAGCTGCAGGACATTCTGGCTCCCGTAGCCGTAGGCAGCGAATTGTCGAAGATTTCGCTGCCGCAAGTGGCCGTCGTGGGAAGCCAAAGCAGCGGCAAATCCAGCGTCCTCGAGGCCCTCGTCGGCCGTGACTTTCTCCCTCGCGGCTGCGATATATGCACTCGTAGACCCCTCGTCTTGATGCTCGAGAACCGCCCCCCCCAATCCCGCCGGAGATGCCGCTCAAACCGAGTGGGGCGAGTTTCGACATTTGCCTGGAAAGCGCTTCTACGACTTCACCAGCATTCGCCGAGAGATTCAGGTACACCTCGACACTTTTTACAGTTTAGGATACTACGAGCTGAGACTGAAAAAGAGGCAGGATTGAACAAAGGCGTTTCGGATAAACAAATTCGGCTCAAGATTACCTCTCCGAATGTGCTTAATATGACGCTTGTTGATTTGCCTGGCATCACTAAGGTTCCGGTGGGAGATCAACCTAGTGACATAGAATCAAGGATCAGGAGGATGATAATGGGACATATTAGGCAAGAAAATTGCATTATATTGGCAGTTACTCCTGCCAACGCTGATTTAGCCACCTCTGATGCACTTCAACTCGCTAGAGAAGCTGACCCTACTGGTTTTCGTACCATTGGTGTCATCACCAAGCTGGATATAATGGACAGGGGCACCGATGCCAGCAACTTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTTGGTTATGTTGGTGTTGTCAACCGTTGTCAGGAGGACATTAATAAAAACTGTAGCATTGCTGCAGCACTTGCTTCTGAGGACAAATTCTTCCGCGATAATCCAGTATATAGCAGTCTCTCTGATAGTTGCGGCATTCCCCAGTTAGCAAGGAAACTGAATCAGATTCTGGAGCACCATATCAGGATTGTTCTCCCTGGTTTGAAGGCTGAGTTGAATTCTCAGATGAATGCTATCTATAAGGAACTACAAACATATGGAAAAGTTATGGAATCCAAAACAGATCTGGGAGCTACTTTGTTGAACATTTTGTCAAAATACTGTGAAGCTTTTACTACCATGTTGGATGGAAAAAATCCGGAGATGTTAACTAAAGAATTGTCAGGAGGAGCCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAGAGCTTGCAGGAAGTAGATCCCTGTGACGATGTAACTGATGATGATATTCGAACTGCCATTCAAAATGCATCCGGTGCAAGAGATGCTTTATTTGTGCCCGAGGTCCCATTTGAAGTTTTAGTTAGAAGAGAGATTGCACGCTTGCTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGCCGCACTTGTGAGGTTACTGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGATGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGCAGATTATATAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCGTAACAGATGCTGAAGCCCAAACTTCTCGAGTGGCTTCGGCAAAGAATGGACAATTACCAAATCAGTATTTGGATGGCCTCACTTCTTTGAAGGATGCCTTACAGGGAAGTCGTTCACAGCTGAATAACAATAAACCTGTATCTGGAGGTTCCACAAGGACTTGGGGTCTTCCATCATTATTTGGGAATCGGACATCATCTGAAGGCTCCCTGGATAGCAGATCTTTTGGTGAACAAAACCATTCACAATCGATGCCCTCTGTAATCCAATTGAGAGAGCCCCCATCCATCTTAAGGCCAGTTGAAGTGACAGAGCATAAAGCAGTGGAAATTGTCATAACCAAATTACTCTTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTCAATCTTACAAAACGGACCCTTCATCGAACCTTCATTCAAAAGTTCTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCATTTGTATTGAAAAGAAAACATATCCAAGAATTGCTCCCATTTTTGGAACAATCTTTGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATGCCGTACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGATTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

808

Amino Acids

90.2

Weight (kDa)

8.56

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 246	6.4e-46	Dynamin family
Dynamin_M	PF01031	254 - 539	1.1e-102	Dynamin central region
GED	PF02212	662 - 751	2.9e-22	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	755
AccBSI	CCGCTC	1 cut(s)	306
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	2 cut(s)	228, 897
AccIII	TCCGGA	1 cut(s)	1159
AclWI	GGATC	4 cut(s)	590, 1192, 1205, 1241
AcoI	YGGCCR	2 cut(s)	153, 208
AcsI	RAATTY	5 cut(s)	474, 887, 1018, 1591, 2255
AcuI	CTGAAG	3 cut(s)	1373, 1695, 1884
AfaI	GTAC	4 cut(s)	388, 715, 1205, 2275
AfeI	AGCGCT	1 cut(s)	348
AfiI	CCNNNNNNNGG	4 cut(s)	832, 1805, 1956, 2221
AflII	CTTAAG	2 cut(s)	797, 1954
AhdI	GACNNNNNGTC	2 cut(s)	257, 1827
AjnI	CCWGG	5 cut(s)	338, 529, 997, 1193, 1872
Alw21I	GWGCWC	2 cut(s)	978, 1522
Alw26I	GTCTC	3 cut(s)	422, 923, 2269
Alw44I	GTGCAC	1 cut(s)	1518
AlwI	GGATC	4 cut(s)	590, 1192, 1205, 1241
AlwNI	CAGNNNCTG	3 cut(s)	970, 1673, 2242
Ama87I	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
Aor13HI	TCCGGA	1 cut(s)	1159
Aor51HI	AGCGCT	1 cut(s)	348
AoxI	GGCC	5 cut(s)	153, 198, 208, 1738, 1958
ApaLI	GTGCAC	1 cut(s)	1518
ApeKI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 863, 866, 1613
ApoI	RAATTY	5 cut(s)	474, 887, 1018, 1591, 2255
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AseI	ATTAAT	1 cut(s)	843
Asp700I	GAANNNNTTC	1 cut(s)	1774
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	199, 1333, 2103
AsuHPI	GGTGA	6 cut(s)	353, 721, 1635, 1904, 2322, 2375
AsuII	TTCGAA	1 cut(s)	1279
AvaI	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
AvaII	GGWCC	2 cut(s)	1333, 2103
BaeGI	GKGCMC	3 cut(s)	758, 1329, 1522
BamHI	GGATCC	1 cut(s)	1197
BanI	GGYRCC	1 cut(s)	755
BanII	GRGCYC	1 cut(s)	1944
BbsI	GAAGAC	2 cut(s)	1388, 1823
Bbv12I	GWGCWC	2 cut(s)	978, 1522
BbvI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 850, 878, 1600
BccI	CCATC	8 cut(s)	1142, 1508, 1552, 1730, 1843, 1954, 1958, 2346
BceAI	ACGGC	4 cut(s)	98, 140, 195, 2256
BciT130I	CCWGG	5 cut(s)	340, 531, 999, 1195, 1874
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	422, 923, 2269
BfaI	CTAG	4 cut(s)	564, 687, 1376, 2379
BfmI	CTRYAG	5 cut(s)	89, 853, 864, 2134, 2418
BfoI	RGCGCY	1 cut(s)	350
BfrI	CTTAAG	2 cut(s)	797, 1954
BfuI	GTATCC	1 cut(s)	408
BglII	AGATCT	3 cut(s)	1084, 1883, 2053
Bme1390I	CCNGG	5 cut(s)	340, 531, 999, 1195, 1874
Bme18I	GGWCC	2 cut(s)	1333, 2103
BmeRI	GACNNNNNGTC	2 cut(s)	257, 1827
BmeT110I	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
BmgT120I	GGNCC	3 cut(s)	199, 1333, 2103
BmiI	GGNNCC	9 cut(s)	105, 546, 757, 1192, 1199, 1335, 1813, 1870, 2105
BmrFI	CCNGG	5 cut(s)	340, 531, 999, 1195, 1874
BmrI	ACTGGG	1 cut(s)	937
BmuI	ACTGGG	1 cut(s)	937
BpiI	GAAGAC	2 cut(s)	1388, 1823
BpmI	CTGGAG	4 cut(s)	992, 1827, 2264, 2380
Bpu14I	TTCGAA	1 cut(s)	1279
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	1913
BsaJI	CCNNGG	3 cut(s)	997, 1329, 1872
BsaWI	WCCGGW	3 cut(s)	547, 1159, 1301
Bsc4I	CCNNNNNNNGG	4 cut(s)	832, 1805, 1956, 2221
Bse3DI	GCAATG	1 cut(s)	858
BseAI	TCCGGA	1 cut(s)	1159
BseBI	CCWGG	5 cut(s)	340, 531, 999, 1195, 1874
BseCI	ATCGAT	1 cut(s)	1913
BseDI	CCNNGG	3 cut(s)	997, 1329, 1872
BseGI	GGATG	8 cut(s)	597, 1153, 1298, 1492, 1741, 1762, 1946, 2179
BseLI	CCNNNNNNNGG	4 cut(s)	832, 1805, 1956, 2221
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	7 cut(s)	417, 870, 1002, 1037, 1440, 1521, 1608
BseRI	GAGGAG	1 cut(s)	1203
BseSI	GKGCMC	3 cut(s)	758, 1329, 1522
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 850, 878, 1600
Bsh1236I	CGCG	2 cut(s)	228, 897
Bsh1285I	CGRYCG	2 cut(s)	57, 211
BshFI	GGCC	5 cut(s)	155, 200, 210, 1740, 1960
BshNI	GGYRCC	1 cut(s)	755
BshVI	ATCGAT	1 cut(s)	1913
BsiEI	CGRYCG	2 cut(s)	57, 211
BsiHKAI	GWGCWC	2 cut(s)	978, 1522
BsiHKCI	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
BsiSI	CCGG	4 cut(s)	295, 548, 1160, 1302
BslFI	GGGAC	2 cut(s)	615, 1319
BslI	CCNNNNNNNGG	4 cut(s)	832, 1805, 1956, 2221
BsmAI	GTCTC	3 cut(s)	422, 923, 2269
BsmFI	GGGAC	2 cut(s)	615, 1319
BsmI	GAATGC	4 cut(s)	367, 936, 1036, 1482
BsnI	GGCC	5 cut(s)	155, 200, 210, 1740, 1960
BsoBI	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
Bsp119I	TTCGAA	1 cut(s)	1279
Bsp1286I	GDGCHC	5 cut(s)	758, 978, 1329, 1522, 1944
Bsp13I	TCCGGA	1 cut(s)	1159
Bsp143I	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
BspANI	GGCC	5 cut(s)	155, 200, 210, 1740, 1960
BspCNI	CTCAG	7 cut(s)	418, 871, 1003, 1036, 1441, 1522, 1609
BspDI	ATCGAT	1 cut(s)	1913
BspEI	TCCGGA	1 cut(s)	1159
BspFNI	CGCG	2 cut(s)	228, 897
BspLI	GGNNCC	9 cut(s)	105, 546, 757, 1192, 1199, 1335, 1813, 1870, 2105
BspMAI	CTGCAG	2 cut(s)	93, 868
BspPI	GGATC	4 cut(s)	590, 1192, 1205, 1241
BspT104I	TTCGAA	1 cut(s)	1279
BspT107I	GGYRCC	1 cut(s)	755
BspTI	CTTAAG	2 cut(s)	797, 1954
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	858
BssECI	CCNNGG	3 cut(s)	997, 1329, 1872
BssMI	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
Bst2UI	CCWGG	5 cut(s)	340, 531, 999, 1195, 1874
Bst4CI	ACNGT	5 cut(s)	408, 827, 854, 1124, 2160
Bst6I	CTCTTC	1 cut(s)	1351
BstAFI	CTTAAG	2 cut(s)	797, 1954
BstAPI	GCANNNNNTGC	4 cut(s)	872, 1304, 1313, 1526
BstBI	TTCGAA	1 cut(s)	1279
BstC8I	GCNNGC	5 cut(s)	766, 1235, 1369, 1373, 1527
BstDEI	CTNAG	8 cut(s)	426, 540, 879, 1011, 1023, 1449, 1530, 1617
BstF5I	GGATG	8 cut(s)	597, 1153, 1298, 1492, 1741, 1762, 1946, 2179
BstFNI	CGCG	2 cut(s)	228, 897
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	9 cut(s)	57, 559, 585, 1087, 1200, 1249, 1886, 2056, 2402
BstMAI	GTCTC	3 cut(s)	422, 923, 2269
BstMBI	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
BstMCI	CGRYCG	2 cut(s)	57, 211
BstNI	CCWGG	5 cut(s)	340, 531, 999, 1195, 1874
BstSCI	CCNGG	5 cut(s)	338, 529, 997, 1193, 1872
BstSFI	CTRYAG	5 cut(s)	89, 853, 864, 2134, 2418
BstSLI	GKGCMC	3 cut(s)	758, 1329, 1522
BstUI	CGCG	2 cut(s)	228, 897
BstV1I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 850, 878, 1600
BstV2I	GAAGAC	2 cut(s)	1388, 1823
BstX2I	RGATCY	5 cut(s)	1084, 1197, 1246, 1883, 2053
BstYI	RGATCY	5 cut(s)	1084, 1197, 1246, 1883, 2053
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	1913
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	5 cut(s)	155, 200, 210, 1740, 1960
BsuTUI	ATCGAT	1 cut(s)	1913
BtsCI	GGATG	8 cut(s)	597, 1153, 1298, 1492, 1741, 1762, 1946, 2179
BtsI	GCAGTG	2 cut(s)	18, 1992
BtsIMutI	CAGTG	7 cut(s)	18, 54, 1397, 1992, 2240, 2301, 2365
Cac8I	GCNNGC	5 cut(s)	766, 1235, 1369, 1373, 1527
CaiI	CAGNNNCTG	3 cut(s)	970, 1673, 2242
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	199, 1333, 2103
ClaI	ATCGAT	1 cut(s)	1913
CseI	GACGC	2 cut(s)	178, 523
Csp6I	GTAC	4 cut(s)	387, 714, 1204, 2274
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	4 cut(s)	1141, 1495, 1631, 2268
CviQI	GTAC	4 cut(s)	387, 714, 1204, 2274
DdeI	CTNAG	8 cut(s)	426, 540, 879, 1011, 1023, 1449, 1530, 1617
DpnI	GATC	9 cut(s)	56, 558, 584, 1086, 1199, 1248, 1885, 2055, 2401
DpnII	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
DriI	GACNNNNNGTC	2 cut(s)	257, 1827
EaeI	YGGCCR	2 cut(s)	153, 208
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	1351
Eam1105I	GACNNNNNGTC	2 cut(s)	257, 1827
EarI	CTCTTC	1 cut(s)	1351
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	1944
Eco32I	GATATC	1 cut(s)	1653
Eco47I	GGWCC	2 cut(s)	1333, 2103
Eco47III	AGCGCT	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	3 cut(s)	1373, 1695, 1884
Eco88I	CYCGRG	5 cut(s)	194, 269, 779, 1328, 1689
EcoO109I	RGGNCCY	2 cut(s)	199, 1333
EcoRI	GAATTC	1 cut(s)	1018
EcoRII	CCWGG	5 cut(s)	338, 529, 997, 1193, 1872
EcoRV	GATATC	1 cut(s)	1653
EcoT22I	ATGCAT	3 cut(s)	1300, 1632, 2179
EcoT38I	GRGCYC	1 cut(s)	1944
FaeI	CATG	4 cut(s)	1144, 1498, 1634, 2271
FalI	AAGNNNNNCTT	4 cut(s)	1300, 1332, 1745, 1777
FaqI	GGGAC	2 cut(s)	615, 1319
FatI	CATG	4 cut(s)	1140, 1494, 1630, 2267
FauI	CCCGC	1 cut(s)	299
FauNDI	CATATG	1 cut(s)	1057
FblI	GTMKAC	1 cut(s)	250
FokI	GGATG	8 cut(s)	604, 1160, 1285, 1499, 1748, 1769, 1933, 2186
FriOI	GRGCYC	1 cut(s)	1944
FspBI	CTAG	4 cut(s)	564, 687, 1376, 2379
GlaI	GCGC	1 cut(s)	348
GsuI	CTGGAG	4 cut(s)	992, 1827, 2264, 2380
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	5 cut(s)	155, 200, 210, 1740, 1960
HapII	CCGG	4 cut(s)	295, 548, 1160, 1302
HgaI	GACGC	2 cut(s)	178, 523
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	1144, 1498, 1634, 2271
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	2 cut(s)	823, 1170
HindII	GTYRAC	2 cut(s)	823, 1170
HindIII	AAGCTT	2 cut(s)	800, 1128
HinfI	GANTC	9 cut(s)	17, 70, 380, 575, 961, 967, 1073, 1849, 2371
HpaI	GTTAAC	1 cut(s)	1170
HpaII	CCGG	4 cut(s)	295, 548, 1160, 1302
HphI	GGTGA	6 cut(s)	353, 721, 1635, 1904, 2322, 2375
Hpy166II	GTNNAC	9 cut(s)	16, 251, 389, 823, 1170, 1501, 1520, 1778, 1895
Hpy8I	GTNNAC	9 cut(s)	16, 251, 389, 823, 1170, 1501, 1520, 1778, 1895
Hpy99I	CGWCG	4 cut(s)	40, 67, 161, 209
HpyAV	CCTTC	6 cut(s)	1000, 1397, 1747, 1859, 2117, 2128
HpyCH4III	ACNGT	5 cut(s)	408, 827, 854, 1124, 2160
HpyF3I	CTNAG	8 cut(s)	426, 540, 879, 1011, 1023, 1449, 1530, 1617
Hsp92II	CATG	4 cut(s)	1144, 1498, 1634, 2271
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	1159
KspAI	GTTAAC	1 cut(s)	1170
Kzo9I	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
LmnI	GCTCC	7 cut(s)	109, 973, 1091, 1190, 1874, 2167, 2217
Lsp1109I	GCAGC	8 cut(s)	75, 129, 132, 186, 218, 850, 878, 1600
MaeI	CTAG	4 cut(s)	564, 687, 1376, 2379
MalI	GATC	9 cut(s)	56, 558, 584, 1086, 1199, 1248, 1885, 2055, 2401
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
MboII	GAAGA	6 cut(s)	145, 883, 1368, 1388, 1823, 2165
MfeI	CAATTG	1 cut(s)	1931
MflI	RGATCY	5 cut(s)	1084, 1197, 1246, 1883, 2053
MhlI	GDGCHC	5 cut(s)	758, 978, 1329, 1522, 1944
MlyI	GAGTC	2 cut(s)	11, 2380
MmeI	TCCRAC	1 cut(s)	1125
Mph1103I	ATGCAT	3 cut(s)	1300, 1632, 2179
MroI	TCCGGA	1 cut(s)	1159
MroXI	GAANNNNTTC	1 cut(s)	1774
MseI	TTAA	6 cut(s)	507, 798, 843, 1169, 1422, 1955
MspA1I	CMGCKG	2 cut(s)	177, 1783
MspCI	CTTAAG	2 cut(s)	797, 1954
MspI	CCGG	4 cut(s)	295, 548, 1160, 1302
MspR9I	CCNGG	5 cut(s)	340, 531, 999, 1195, 1874
MunI	CAATTG	1 cut(s)	1931
Mva1269I	GAATGC	4 cut(s)	367, 936, 1036, 1482
MvaI	CCWGG	5 cut(s)	340, 531, 999, 1195, 1874
MvnI	CGCG	2 cut(s)	228, 897
NdeI	CATATG	1 cut(s)	1057
NdeII	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
NlaIII	CATG	4 cut(s)	1144, 1498, 1634, 2271
NlaIV	GGNNCC	9 cut(s)	105, 546, 757, 1192, 1199, 1335, 1813, 1870, 2105
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	5 cut(s)	49, 212, 566, 1253, 1969
NsiI	ATGCAT	3 cut(s)	1300, 1632, 2179
NspV	TTCGAA	1 cut(s)	1279
PaeR7I	CTCGAG	3 cut(s)	194, 269, 1689
PcsI	WCGNNNNNNNCGW	4 cut(s)	35, 59, 71, 201
PctI	GAATGC	4 cut(s)	367, 936, 1036, 1482
PdmI	GAANNNNTTC	1 cut(s)	1774
PfeI	GAWTC	7 cut(s)	70, 380, 575, 961, 967, 1073, 1849
PflFI	GACNNNGTC	1 cut(s)	2033
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	2 cut(s)	11, 2379
PpsI	GAGTC	2 cut(s)	11, 2379
PpuMI	RGGWCCY	1 cut(s)	1333
PshBI	ATTAAT	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	1333
Psp6I	CCWGG	5 cut(s)	338, 529, 997, 1193, 1872
PspGI	CCWGG	5 cut(s)	338, 529, 997, 1193, 1872
PspN4I	GGNNCC	9 cut(s)	105, 546, 757, 1192, 1199, 1335, 1813, 1870, 2105
PspPI	GGNCC	3 cut(s)	199, 1333, 2103
PspPPI	RGGWCCY	1 cut(s)	1333
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	93, 868
PstNI	CAGNNNCTG	3 cut(s)	970, 1673, 2242
PsuI	RGATCY	5 cut(s)	1084, 1197, 1246, 1883, 2053
PsyI	GACNNNGTC	1 cut(s)	2033
PvuI	CGATCG	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	1783
RsaI	GTAC	4 cut(s)	388, 715, 1205, 2275
RsaNI	GTAC	4 cut(s)	387, 714, 1204, 2274
SaqAI	TTAA	6 cut(s)	507, 798, 843, 1169, 1422, 1955
Sau3AI	GATC	9 cut(s)	54, 556, 582, 1084, 1197, 1246, 1883, 2053, 2399
Sau96I	GGNCC	3 cut(s)	199, 1333, 2103
SchI	GAGTC	2 cut(s)	11, 2380
ScrFI	CCNGG	5 cut(s)	340, 531, 999, 1195, 1874
SduI	GDGCHC	5 cut(s)	758, 978, 1329, 1522, 1944
SfcI	CTRYAG	5 cut(s)	89, 853, 864, 2134, 2418
Sfr274I	CTCGAG	3 cut(s)	194, 269, 1689
SfuI	TTCGAA	1 cut(s)	1279
SinI	GGWCC	2 cut(s)	1333, 2103
SlaI	CTCGAG	3 cut(s)	194, 269, 1689
SmlI	CTYRAG	6 cut(s)	194, 269, 482, 797, 1689, 1954
SmoI	CTYRAG	6 cut(s)	194, 269, 482, 797, 1689, 1954
SspMI	CTAG	4 cut(s)	564, 687, 1376, 2379
StyD4I	CCNGG	5 cut(s)	338, 529, 997, 1193, 1872
TaaI	ACNGT	5 cut(s)	408, 827, 854, 1124, 2160
TaqI	TCGA	9 cut(s)	131, 195, 270, 329, 394, 1279, 1690, 1913, 2113
TatI	WGTACW	1 cut(s)	1203
TauI	GCSGC	6 cut(s)	148, 180, 231, 306, 936, 1434
TfiI	GAWTC	7 cut(s)	70, 380, 575, 961, 967, 1073, 1849
Tru1I	TTAA	6 cut(s)	507, 798, 843, 1169, 1422, 1955
Tru9I	TTAA	6 cut(s)	507, 798, 843, 1169, 1422, 1955
TscAI	CASTG	7 cut(s)	18, 54, 1397, 1992, 2247, 2308, 2365
TseFI	GTSAC	5 cut(s)	49, 212, 566, 1253, 1969
TseI	GCWGC	8 cut(s)	88, 120, 142, 174, 231, 863, 866, 1613
Tsp45I	GTSAC	5 cut(s)	49, 212, 566, 1253, 1969
TspDTI	ATGAA	5 cut(s)	1043, 1503, 2099, 2110, 2379
TspGWI	ACGGA	1 cut(s)	2116
TspRI	CASTG	7 cut(s)	18, 54, 1397, 1992, 2247, 2308, 2365
Tth111I	GACNNNGTC	1 cut(s)	2033
Vha464I	CTTAAG	2 cut(s)	797, 1954
VneI	GTGCAC	1 cut(s)	1518
VpaK11BI	GGWCC	2 cut(s)	1333, 2103
VspI	ATTAAT	1 cut(s)	843
XapI	RAATTY	5 cut(s)	474, 887, 1018, 1591, 2255
XbaI	TCTAGA	1 cut(s)	2378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XhoI	CTCGAG	3 cut(s)	194, 269, 1689
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	1774
XspI	CTAG	4 cut(s)	564, 687, 1376, 2379
Zsp2I	ATGCAT	3 cut(s)	1300, 1632, 2179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.