Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Reverse (-)

63244946 .. 63254728

Gene Structure 9783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGCTCGAGAACCGCCCCCCCAATCCCGCCGGAGATGCGGCTCAAACCGAGTGGGGCGAGTTTCGACATTTGCCTGGAAAGCGCTTCTACGACTTCACCAGCATTCGCCGAGAGATTCAGGCTGAGACTGAAAAAGAGGCAGGATTGAACAAAGGCGTTTCGGATAAACAAATTCGGCTCAAGATTACCTCTCCGAATGTGCTTAATATGACGCTTGTTGATTTGCCTGGCATCACTAAGGTTCCGGTGGGAGATCAACCTAGTGACATAGAATCAAGGATCAGGAGGATGATAATGGGACATATTAGGCAAGAAAATTGCATTATATTGGCAGTTACTCCTGCCAACGCTGATTTAGCCACCTCTGATGCACTTCAACTCGCTAGAGAAGCTGACCCTACTGGTTTTCGTACCATTGGTGTCATCACCAAGCTTGATATAATGGACAGGGGCACCGATGCCAGCAACTTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTCGGTTATGTTGGTGTTGTCAACCGTTGTCAGGAGGACATCAATAAAAACCGTAGCATTGCTGCAGCACTTGCTTATGAGGACAAATTCTTCCTTGATAATCCAGTATATGGCAGTCTCTCTGATCGTTGCGGCATTCCCCAGTTAGCAAGGAAACTGAATCAGATTCTGGAGCACCATATCAGGATTGTTCTCCCTGGTTTAAAGGCCGAGTTGAATTCTCAGATGAATGCTATTTATAAAGAACTACAAACATGTGGAAAAGTTATGGAATCCAAAACAGATCTGGGAGCAACTTTGTTGAACATTTTGTCAAAATACTGTGAAGCTTTTACTGCCATGTTGGATGGAAAAAATCCGGAGATGTCAACTAAAGAATTGTCAGGAGGAGCCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAGAGCTTGCAGGAAGTAGATCCCTGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTTAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATGGTAAGCTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATATAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGGAAGTCATTCACAGCTGAATAACAATAAACCTGTATCTGGAGGTTCTACAAGGACTTGGACTCTTCCATTATTATTTGGGAATTGGACATCGTCTGGAGGCTCCCTTAGCAGATCTTTTGGTGAACAAAACCATTCACAATTGATGCCCTCTGTAATCCAATTGAGAGAGCCCCCATCCATCTTAAGGCCAGTTGAAGTGACAGAGCATAAAGCAGTGGAAATTATTGTAACCAAATTACTCTTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTCAATCTTACAAAACGGACCCTTCACCGAACCTTCATTCAAAAGTTGTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGAAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTATGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAATTGATGCTTCCGCTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTCAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

693

Amino Acids

77.89

Weight (kDa)

7.25

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	13 - 145	6.8e-32	Dynamin family
Dynamin_M	PF01031	153 - 438	3.1e-103	Dynamin central region
GED	PF02212	547 - 636	4e-23	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AccB1I	GGYRCC	1 cut(s)	452
AccB7I	CCANNNNNTGG	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	856
AciI	CCGC	6 cut(s)	13, 27, 38, 630, 1672, 1956
AclWI	GGATC	4 cut(s)	287, 889, 902, 938
AcoI	YGGCCR	1 cut(s)	981
AcsI	RAATTY	5 cut(s)	171, 584, 715, 1288, 1910
AcuI	CTGAAG	2 cut(s)	1070, 1392
AfaI	GTAC	3 cut(s)	412, 902, 1790
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	6 cut(s)	529, 608, 1424, 1463, 1611, 1876
AflII	CTTAAG	2 cut(s)	494, 1609
AflIII	ACRYGT	1 cut(s)	752
AjnI	CCWGG	4 cut(s)	73, 226, 694, 890
AluBI	AGCT	9 cut(s)	392, 433, 499, 827, 930, 1200, 1310, 1441, 2078
AluI	AGCT	9 cut(s)	392, 433, 499, 827, 930, 1200, 1310, 1441, 2078
Alw21I	GWGCWC	2 cut(s)	675, 1219
Alw26I	GTCTC	3 cut(s)	119, 620, 1924
Alw44I	GTGCAC	1 cut(s)	1215
AlwI	GGATC	4 cut(s)	287, 889, 902, 938
AlwNI	CAGNNNCTG	2 cut(s)	667, 1897
Ama87I	CYCGRG	4 cut(s)	5, 476, 1386, 1395
Aor13HI	TCCGGA	1 cut(s)	856
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	3 cut(s)	705, 981, 1613
ApaLI	GTGCAC	1 cut(s)	1215
ApeKI	GCWGC	3 cut(s)	560, 563, 1310
ApoI	RAATTY	5 cut(s)	171, 584, 715, 1288, 1910
Asp700I	GAANNNNTTC	1 cut(s)	1432
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	1030, 1758
AsuHPI	GGTGA	6 cut(s)	88, 418, 1332, 1559, 1757, 1977
AsuII	TTCGAA	1 cut(s)	976
AvaI	CYCGRG	4 cut(s)	5, 476, 1386, 1395
AvaII	GGWCC	2 cut(s)	1030, 1758
AxyI	CCTNAGG	1 cut(s)	1026
BaeGI	GKGCMC	2 cut(s)	455, 1219
BamHI	GGATCC	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	1599
BbsI	GAAGAC	2 cut(s)	1060, 1085
Bbv12I	GWGCWC	2 cut(s)	675, 1219
BbvI	GCAGC	3 cut(s)	547, 575, 1297
BccI	CCATC	5 cut(s)	839, 1249, 1609, 1613, 2001
BceAI	ACGGC	1 cut(s)	996
BciT130I	CCWGG	4 cut(s)	75, 228, 696, 892
BcoDI	GTCTC	3 cut(s)	119, 620, 1924
BfaI	CTAG	3 cut(s)	261, 384, 2034
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	85
BfrI	CTTAAG	2 cut(s)	494, 1609
BglII	AGATCT	3 cut(s)	781, 1538, 1708
BisI	GCNGC	5 cut(s)	39, 561, 564, 631, 1311
BlsI	GCNGC	5 cut(s)	40, 562, 565, 632, 1312
Bme1390I	CCNGG	4 cut(s)	75, 228, 696, 892
Bme18I	GGWCC	2 cut(s)	1030, 1758
BmeT110I	CYCGRG	4 cut(s)	5, 476, 1386, 1395
BmgT120I	GGNCC	2 cut(s)	1030, 1758
BmiI	GGNNCC	7 cut(s)	243, 454, 889, 896, 1032, 1528, 1760
BmrFI	CCNGG	4 cut(s)	75, 228, 696, 892
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	9 cut(s)	25, 240, 358, 448, 1004, 1357, 1560, 1819, 1939
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	2 cut(s)	1060, 1085
BpmI	CTGGAG	5 cut(s)	689, 1485, 1542, 1919, 2035
Bpu10I	CCTNAGC	1 cut(s)	1532
Bpu14I	TTCGAA	1 cut(s)	976
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	694
BsaWI	WCCGGW	2 cut(s)	244, 856
Bsc4I	CCNNNNNNNGG	6 cut(s)	529, 608, 1424, 1463, 1611, 1876
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	1 cut(s)	555
BseAI	TCCGGA	1 cut(s)	856
BseBI	CCWGG	4 cut(s)	75, 228, 696, 892
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	7 cut(s)	294, 850, 1189, 1372, 1601, 1834, 1922
BseLI	CCNNNNNNNGG	6 cut(s)	529, 608, 1424, 1463, 1611, 1876
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	6 cut(s)	114, 734, 1017, 1137, 1218, 1305
BseRI	GAGGAG	1 cut(s)	900
BseSI	GKGCMC	2 cut(s)	455, 1219
BseXI	GCAGC	3 cut(s)	547, 575, 1297
BshFI	GGCC	3 cut(s)	707, 983, 1615
BshNI	GGYRCC	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	675, 1219
BsiHKCI	CYCGRG	4 cut(s)	5, 476, 1386, 1395
BsiSI	CCGG	3 cut(s)	30, 245, 857
BslFI	GGGAC	2 cut(s)	312, 1016
BslI	CCNNNNNNNGG	6 cut(s)	529, 608, 1424, 1463, 1611, 1876
BsmAI	GTCTC	3 cut(s)	119, 620, 1924
BsmFI	GGGAC	2 cut(s)	312, 1016
BsmI	GAATGC	4 cut(s)	102, 633, 733, 1179
BsnI	GGCC	3 cut(s)	707, 983, 1615
BsoBI	CYCGRG	4 cut(s)	5, 476, 1386, 1395
Bsp119I	TTCGAA	1 cut(s)	976
Bsp1286I	GDGCHC	4 cut(s)	455, 675, 1219, 1599
Bsp13I	TCCGGA	1 cut(s)	856
Bsp1407I	TGTACA	1 cut(s)	1788
Bsp143I	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
BspACI	CCGC	6 cut(s)	13, 27, 38, 630, 1672, 1956
BspANI	GGCC	3 cut(s)	707, 983, 1615
BspCNI	CTCAG	6 cut(s)	115, 733, 1018, 1138, 1219, 1306
BspEI	TCCGGA	1 cut(s)	856
BspLI	GGNNCC	7 cut(s)	243, 454, 889, 896, 1032, 1528, 1760
BspMAI	CTGCAG	1 cut(s)	565
BspPI	GGATC	4 cut(s)	287, 889, 902, 938
BspT104I	TTCGAA	1 cut(s)	976
BspT107I	GGYRCC	1 cut(s)	452
BspTI	CTTAAG	2 cut(s)	494, 1609
BsrDI	GCAATG	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	1788
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
Bst2UI	CCWGG	4 cut(s)	75, 228, 696, 892
Bst4CI	ACNGT	5 cut(s)	524, 551, 821, 1214, 1815
Bst6I	CTCTTC	1 cut(s)	1494
BstAFI	CTTAAG	2 cut(s)	494, 1609
BstAPI	GCANNNNNTGC	4 cut(s)	569, 1001, 1010, 1223
BstAUI	TGTACA	1 cut(s)	1788
BstBI	TTCGAA	1 cut(s)	976
BstC8I	GCNNGC	4 cut(s)	463, 932, 1066, 1224
BstDEI	CTNAG	8 cut(s)	123, 237, 720, 1026, 1146, 1227, 1314, 1532
BstF5I	GGATG	7 cut(s)	294, 850, 1189, 1372, 1601, 1834, 1922
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	9 cut(s)	256, 282, 625, 784, 897, 946, 1541, 1711, 2057
BstMAI	GTCTC	3 cut(s)	119, 620, 1924
BstMBI	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
BstNI	CCWGG	4 cut(s)	75, 228, 696, 892
BstNSI	RCATGY	1 cut(s)	756
BstSCI	CCNGG	4 cut(s)	73, 226, 694, 890
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	2 cut(s)	455, 1219
BstV1I	GCAGC	3 cut(s)	547, 575, 1297
BstV2I	GAAGAC	2 cut(s)	1060, 1085
BstX2I	RGATCY	5 cut(s)	781, 894, 943, 1538, 1708
BstYI	RGATCY	5 cut(s)	781, 894, 943, 1538, 1708
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	3 cut(s)	707, 983, 1615
BtsCI	GGATG	7 cut(s)	294, 850, 1189, 1372, 1601, 1834, 1922
BtsI	GCAGTG	1 cut(s)	1647
BtsIMutI	CAGTG	4 cut(s)	1094, 1647, 1895, 2020
Cac8I	GCNNGC	4 cut(s)	463, 932, 1066, 1224
CaiI	CAGNNNCTG	2 cut(s)	667, 1897
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	2 cut(s)	1030, 1758
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	411, 901, 1789
CspCI	CAANNNNNGTGG	2 cut(s)	32, 67
CviAII	CATG	4 cut(s)	753, 838, 1192, 1328
CviQI	GTAC	3 cut(s)	411, 901, 1789
DdeI	CTNAG	8 cut(s)	123, 237, 720, 1026, 1146, 1227, 1314, 1532
DpnI	GATC	9 cut(s)	255, 281, 624, 783, 896, 945, 1540, 1710, 2056
DpnII	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
DraI	TTTAAA	1 cut(s)	702
EaeI	YGGCCR	1 cut(s)	981
Eam1104I	CTCTTC	1 cut(s)	1494
EarI	CTCTTC	1 cut(s)	1494
Eco24I	GRGCYC	1 cut(s)	1599
Eco32I	GATATC	1 cut(s)	1350
Eco47I	GGWCC	2 cut(s)	1030, 1758
Eco47III	AGCGCT	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	1070, 1392
Eco81I	CCTNAGG	1 cut(s)	1026
Eco88I	CYCGRG	4 cut(s)	5, 476, 1386, 1395
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	715
EcoRII	CCWGG	4 cut(s)	73, 226, 694, 890
EcoRV	GATATC	1 cut(s)	1350
EcoT22I	ATGCAT	2 cut(s)	997, 1329
EcoT38I	GRGCYC	1 cut(s)	1599
FaeI	CATG	4 cut(s)	756, 841, 1195, 1331
FalI	AAGNNNNNCTT	2 cut(s)	997, 1029
FaqI	GGGAC	2 cut(s)	312, 1016
FatI	CATG	4 cut(s)	752, 837, 1191, 1327
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	5 cut(s)	39, 561, 564, 631, 1311
FokI	GGATG	7 cut(s)	301, 857, 1196, 1379, 1588, 1841, 1909
FriOI	GRGCYC	1 cut(s)	1599
Fsp4HI	GCNGC	5 cut(s)	39, 561, 564, 631, 1311
FspBI	CTAG	3 cut(s)	261, 384, 2034
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	5 cut(s)	39, 561, 564, 631, 1311
GsuI	CTGGAG	5 cut(s)	689, 1485, 1542, 1919, 2035
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	707, 983, 1615
HapII	CCGG	3 cut(s)	30, 245, 857
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	756, 841, 1195, 1331
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	2 cut(s)	520, 867
HindII	GTYRAC	2 cut(s)	520, 867
HindIII	AAGCTT	3 cut(s)	431, 825, 1198
HinfI	GANTC	7 cut(s)	115, 272, 658, 664, 770, 1486, 2026
HpaII	CCGG	3 cut(s)	30, 245, 857
HphI	GGTGA	6 cut(s)	88, 418, 1332, 1559, 1757, 1977
Hpy166II	GTNNAC	4 cut(s)	520, 867, 1217, 1550
Hpy188I	TCNGA	9 cut(s)	163, 195, 367, 622, 663, 723, 1694, 1871, 2022
Hpy8I	GTNNAC	4 cut(s)	520, 867, 1217, 1550
HpyAV	CCTTC	3 cut(s)	1094, 1772, 1783
HpyCH4III	ACNGT	5 cut(s)	524, 551, 821, 1214, 1815
HpyF3I	CTNAG	8 cut(s)	123, 237, 720, 1026, 1146, 1227, 1314, 1532
Hsp92II	CATG	4 cut(s)	756, 841, 1195, 1331
HspAI	GCGC	1 cut(s)	82
Kpn2I	TCCGGA	1 cut(s)	856
Kzo9I	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
LmnI	GCTCC	6 cut(s)	670, 788, 887, 1532, 1822, 1872
Lsp1109I	GCAGC	3 cut(s)	547, 575, 1297
LweI	GCATC	9 cut(s)	25, 240, 358, 448, 1004, 1357, 1560, 1819, 1939
MaeI	CTAG	3 cut(s)	261, 384, 2034
MaeIII	GTNAC	8 cut(s)	263, 334, 958, 1141, 1208, 1624, 1654, 2062
MalI	GATC	9 cut(s)	255, 281, 624, 783, 896, 945, 1540, 1710, 2056
MboI	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
MboII	GAAGA	5 cut(s)	580, 1065, 1085, 1481, 1820
MfeI	CAATTG	2 cut(s)	1565, 1586
MflI	RGATCY	5 cut(s)	781, 894, 943, 1538, 1708
MhlI	GDGCHC	4 cut(s)	455, 675, 1219, 1599
MlyI	GAGTC	2 cut(s)	1480, 2035
MmeI	TCCRAC	1 cut(s)	822
Mph1103I	ATGCAT	2 cut(s)	997, 1329
MroI	TCCGGA	1 cut(s)	856
MroXI	GAANNNNTTC	1 cut(s)	1432
MseI	TTAA	5 cut(s)	204, 495, 701, 1119, 1610
MspA1I	CMGCKG	2 cut(s)	1441, 1958
MspCI	CTTAAG	2 cut(s)	494, 1609
MspI	CCGG	3 cut(s)	30, 245, 857
MspR9I	CCNGG	4 cut(s)	75, 228, 696, 892
MunI	CAATTG	2 cut(s)	1565, 1586
Mva1269I	GAATGC	4 cut(s)	102, 633, 733, 1179
MvaI	CCWGG	4 cut(s)	75, 228, 696, 892
NdeII	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
NlaIII	CATG	4 cut(s)	756, 841, 1195, 1331
NlaIV	GGNNCC	7 cut(s)	243, 454, 889, 896, 1032, 1528, 1760
NmeAIII	GCCGAG	2 cut(s)	134, 733
NmuCI	GTSAC	3 cut(s)	263, 1208, 1624
NsiI	ATGCAT	2 cut(s)	997, 1329
NspI	RCATGY	1 cut(s)	756
NspV	TTCGAA	1 cut(s)	976
PaeR7I	CTCGAG	1 cut(s)	5
PciI	ACATGT	1 cut(s)	752
PctI	GAATGC	4 cut(s)	102, 633, 733, 1179
PdmI	GAANNNNTTC	1 cut(s)	1432
PfeI	GAWTC	5 cut(s)	115, 272, 658, 664, 770
PflFI	GACNNNGTC	2 cut(s)	1516, 1688
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	5 cut(s)	40, 562, 565, 632, 1312
PleI	GAGTC	2 cut(s)	1480, 2034
PpsI	GAGTC	2 cut(s)	1480, 2034
PpuMI	RGGWCCY	1 cut(s)	1030
PscI	ACATGT	1 cut(s)	752
PsiI	TTATAA	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	4 cut(s)	73, 226, 694, 890
PspGI	CCWGG	4 cut(s)	73, 226, 694, 890
PspN4I	GGNNCC	7 cut(s)	243, 454, 889, 896, 1032, 1528, 1760
PspPI	GGNCC	2 cut(s)	1030, 1758
PspPPI	RGGWCCY	1 cut(s)	1030
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	2 cut(s)	667, 1897
PsuI	RGATCY	5 cut(s)	781, 894, 943, 1538, 1708
PsyI	GACNNNGTC	2 cut(s)	1516, 1688
PvuII	CAGCTG	1 cut(s)	1441
RsaI	GTAC	3 cut(s)	412, 902, 1790
RsaNI	GTAC	3 cut(s)	411, 901, 1789
SaqAI	TTAA	5 cut(s)	204, 495, 701, 1119, 1610
SatI	GCNGC	5 cut(s)	39, 561, 564, 631, 1311
Sau3AI	GATC	9 cut(s)	253, 279, 622, 781, 894, 943, 1538, 1708, 2054
Sau96I	GGNCC	2 cut(s)	1030, 1758
SchI	GAGTC	2 cut(s)	1480, 2035
ScrFI	CCNGG	4 cut(s)	75, 228, 696, 892
SduI	GDGCHC	4 cut(s)	455, 675, 1219, 1599
SfaNI	GCATC	9 cut(s)	25, 240, 358, 448, 1004, 1357, 1560, 1819, 1939
SfcI	CTRYAG	1 cut(s)	561
Sfr274I	CTCGAG	1 cut(s)	5
SfuI	TTCGAA	1 cut(s)	976
SinI	GGWCC	2 cut(s)	1030, 1758
SlaI	CTCGAG	1 cut(s)	5
SmlI	CTYRAG	4 cut(s)	5, 179, 494, 1609
SmoI	CTYRAG	4 cut(s)	5, 179, 494, 1609
SsiI	CCGC	6 cut(s)	13, 27, 38, 630, 1672, 1956
SspMI	CTAG	3 cut(s)	261, 384, 2034
StyD4I	CCNGG	4 cut(s)	73, 226, 694, 890
TaaI	ACNGT	5 cut(s)	524, 551, 821, 1214, 1815
TaqI	TCGA	3 cut(s)	6, 64, 976
TatI	WGTACW	2 cut(s)	900, 1788
TauI	GCSGC	2 cut(s)	41, 633
TfiI	GAWTC	5 cut(s)	115, 272, 658, 664, 770
Tru1I	TTAA	5 cut(s)	204, 495, 701, 1119, 1610
Tru9I	TTAA	5 cut(s)	204, 495, 701, 1119, 1610
TscAI	CASTG	4 cut(s)	1094, 1647, 1902, 2020
TseFI	GTSAC	3 cut(s)	263, 1208, 1624
TseI	GCWGC	3 cut(s)	560, 563, 1310
Tsp45I	GTSAC	3 cut(s)	263, 1208, 1624
TspDTI	ATGAA	4 cut(s)	740, 1200, 1765, 2034
TspGWI	ACGGA	2 cut(s)	1379, 1771
TspRI	CASTG	4 cut(s)	1094, 1647, 1902, 2020
Tth111I	GACNNNGTC	2 cut(s)	1516, 1688
Van91I	CCANNNNNTGG	1 cut(s)	608
Vha464I	CTTAAG	2 cut(s)	494, 1609
VneI	GTGCAC	1 cut(s)	1215
VpaK11BI	GGWCC	2 cut(s)	1030, 1758
XapI	RAATTY	5 cut(s)	171, 584, 715, 1288, 1910
XbaI	TCTAGA	1 cut(s)	2033
XceI	RCATGY	1 cut(s)	756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	781
XhoI	CTCGAG	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	1432
XspI	CTAG	3 cut(s)	261, 384, 2034
Zsp2I	ATGCAT	2 cut(s)	997, 1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.