Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Reverse (-)

17832746 .. 17842615

Gene Structure 9870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGCTTCGAGATGGAGACCAGATGAAGGTAACCGCTGCTACTGGTGCTATCGAAGGTCTCCGCTACTGCTGCTACTGGTGCTATCGAAGGTCTCTGCTACTGCTGCTACTGAAGGAAGTAGATCCCAGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTCAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAACTGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATACAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGGAAGTCGTTCACAACTGAATAACAATAAACCTGTATCTGGTAAGAGGTTCTACAAGAACTTGGGGTCTTGGGCTCTTCCATTATTATTTGGGAATTGGACATCATCTGGAGGCTCCCTGGATAGCAGATCTTTTGGTGAACAAAACCATTCACAATCGATGCCCTCTGTAATCCAATTGCCAGTTGAAGTGACAGAGCATAAAGCTGTGGAAATTATTGTAACCAAATTACTCTTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTCAATCTTACAAAACGGACCCTTCATCGAACCTTCATTCAAAAGCTGTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGAAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTATGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACAACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

417

Amino Acids

47.44

Weight (kDa)

7.7

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	37 - 164	8.2e-40	Dynamin central region
GED	PF02212	270 - 359	1.8e-23	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 61, 841
AclWI	GGATC	1 cut(s)	116
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	466, 1079
AcuI	CTGAAG	3 cut(s)	131, 248, 570
AfaI	GTAC	1 cut(s)	959
AfiI	CCNNNNNNNGG	4 cut(s)	25, 602, 641, 1045
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	4 cut(s)	488, 809, 955, 1247
AluI	AGCT	4 cut(s)	488, 809, 955, 1247
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	4 cut(s)	9, 62, 96, 1093
Alw44I	GTGCAC	1 cut(s)	393
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	1066
Ama87I	CYCGRG	2 cut(s)	564, 573
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	393
ApeKI	GCWGC	4 cut(s)	35, 69, 103, 488
ApoI	RAATTY	2 cut(s)	466, 1079
Asp700I	GAANNNNTTC	1 cut(s)	610
AspS9I	GGNCC	2 cut(s)	208, 927
AsuHPI	GGTGA	4 cut(s)	510, 752, 1146, 1199
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	2 cut(s)	564, 573
AvaII	GGWCC	2 cut(s)	208, 927
AxyI	CCTNAGG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	679
BbsI	GAAGAC	2 cut(s)	238, 263
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	22, 56, 90, 475
BccI	CCATC	3 cut(s)	5, 427, 1170
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	4 cut(s)	9, 62, 96, 1093
BfaI	CTAG	1 cut(s)	1203
BglII	AGATCT	2 cut(s)	731, 877
BisI	GCNGC	4 cut(s)	36, 70, 104, 489
BlsI	GCNGC	4 cut(s)	37, 71, 105, 490
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	2 cut(s)	208, 927
BmeT110I	CYCGRG	2 cut(s)	564, 573
BmgT120I	GGNCC	2 cut(s)	208, 927
BmiI	GGNNCC	3 cut(s)	210, 718, 929
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	5 cut(s)	182, 535, 753, 988, 1108
BmuI	ACTGGG	1 cut(s)	120
BpiI	GAAGAC	2 cut(s)	238, 263
BpmI	CTGGAG	3 cut(s)	732, 1088, 1204
Bpu14I	TTCGAA	1 cut(s)	154
Bsa29I	ATCGAT	1 cut(s)	761
BsaI	GGTCTC	3 cut(s)	9, 62, 96
BsaJI	CCNNGG	1 cut(s)	720
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 602, 641, 1045
Bse1I	ACTGG	8 cut(s)	46, 80, 126, 297, 341, 785, 1071, 1182
Bse21I	CCTNAGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	720
BseGI	GGATG	4 cut(s)	367, 550, 1003, 1091
BseLI	CCNNNNNNNGG	4 cut(s)	25, 602, 641, 1045
BseMII	CTCAG	4 cut(s)	195, 315, 396, 483
BseNI	ACTGG	8 cut(s)	46, 80, 126, 297, 341, 785, 1071, 1182
BseSI	GKGCMC	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	22, 56, 90, 475
BshFI	GGCC	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	397
BsiHKCI	CYCGRG	2 cut(s)	564, 573
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	4 cut(s)	25, 602, 641, 1045
BsmAI	GTCTC	4 cut(s)	9, 62, 96, 1093
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	3 cut(s)	9, 62, 96
BsoBI	CYCGRG	2 cut(s)	564, 573
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	397, 679
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	121, 731, 877, 1223
BspACI	CCGC	3 cut(s)	33, 61, 841
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	4 cut(s)	196, 316, 397, 484
BspDI	ATCGAT	1 cut(s)	761
BspLI	GGNNCC	3 cut(s)	210, 718, 929
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	154
BspTNI	GGTCTC	3 cut(s)	9, 62, 96
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	8 cut(s)	46, 80, 126, 297, 341, 785, 1071, 1182
BssECI	CCNNGG	1 cut(s)	720
BssMI	GATC	4 cut(s)	121, 731, 877, 1223
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	392, 984
Bst6I	CTCTTC	1 cut(s)	684
BstAPI	GCANNNNNTGC	3 cut(s)	179, 188, 401
BstAUI	TGTACA	1 cut(s)	957
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	244, 402
BstDEI	CTNAG	4 cut(s)	204, 324, 405, 492
BstEII	GGTNACC	1 cut(s)	28
BstF5I	GGATG	4 cut(s)	367, 550, 1003, 1091
BstKTI	GATC	4 cut(s)	124, 734, 880, 1226
BstMAI	GTCTC	4 cut(s)	9, 62, 96, 1093
BstMBI	GATC	4 cut(s)	121, 731, 877, 1223
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 69, 78, 103, 179, 188, 401, 497
BstNI	CCWGG	1 cut(s)	722
BstPI	GGTNACC	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	720
BstSLI	GKGCMC	1 cut(s)	397
BstV1I	GCAGC	4 cut(s)	22, 56, 90, 475
BstV2I	GAAGAC	2 cut(s)	238, 263
BstX2I	RGATCY	3 cut(s)	121, 731, 877
BstYI	RGATCY	3 cut(s)	121, 731, 877
Bsu15I	ATCGAT	1 cut(s)	761
Bsu36I	CCTNAGG	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	761
BtsCI	GGATG	4 cut(s)	367, 550, 1003, 1091
BtsIMutI	CAGTG	5 cut(s)	133, 272, 1064, 1125, 1189
Cac8I	GCNNGC	2 cut(s)	244, 402
CaiI	CAGNNNCTG	1 cut(s)	1066
Cfr13I	GGNCC	2 cut(s)	208, 927
ClaI	ATCGAT	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	958
CviAII	CATG	2 cut(s)	370, 506
CviQI	GTAC	1 cut(s)	958
DdeI	CTNAG	4 cut(s)	204, 324, 405, 492
DpnI	GATC	4 cut(s)	123, 733, 879, 1225
DpnII	GATC	4 cut(s)	121, 731, 877, 1223
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	3 cut(s)	9, 62, 96
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	2 cut(s)	208, 927
Eco57I	CTGAAG	3 cut(s)	131, 248, 570
Eco81I	CCTNAGG	1 cut(s)	204
Eco88I	CYCGRG	2 cut(s)	564, 573
Eco91I	GGTNACC	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	720
EcoRV	GATATC	1 cut(s)	528
EcoT22I	ATGCAT	2 cut(s)	175, 507
EcoT38I	GRGCYC	1 cut(s)	679
FaeI	CATG	2 cut(s)	373, 509
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	2 cut(s)	369, 505
Fnu4HI	GCNGC	4 cut(s)	36, 70, 104, 489
FokI	GGATG	4 cut(s)	374, 557, 1010, 1078
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	4 cut(s)	36, 70, 104, 489
FspBI	CTAG	1 cut(s)	1203
GluI	GCNGC	4 cut(s)	36, 70, 104, 489
GsuI	CTGGAG	3 cut(s)	732, 1088, 1204
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	373, 509
HinfI	GANTC	1 cut(s)	1195
HphI	GGTGA	4 cut(s)	510, 752, 1146, 1199
Hpy166II	GTNNAC	4 cut(s)	376, 395, 614, 743
Hpy188I	TCNGA	3 cut(s)	230, 863, 1040
Hpy188III	TCNNGA	5 cut(s)	8, 711, 875, 1203, 1221
Hpy8I	GTNNAC	4 cut(s)	376, 395, 614, 743
HpyAV	CCTTC	7 cut(s)	19, 47, 81, 106, 272, 941, 952
HpyCH4III	ACNGT	2 cut(s)	392, 984
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 69, 78, 103, 179, 188, 401, 497
HpyF3I	CTNAG	4 cut(s)	204, 324, 405, 492
Hsp92II	CATG	2 cut(s)	373, 509
Kzo9I	GATC	4 cut(s)	121, 731, 877, 1223
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	3 cut(s)	722, 991, 1041
Lsp1109I	GCAGC	4 cut(s)	22, 56, 90, 475
LweI	GCATC	5 cut(s)	182, 535, 753, 988, 1108
MaeI	CTAG	1 cut(s)	1203
MaeIII	GTNAC	7 cut(s)	28, 136, 319, 386, 793, 823, 1231
MalI	GATC	4 cut(s)	123, 733, 879, 1225
MboI	GATC	4 cut(s)	121, 731, 877, 1223
MboII	GAAGA	4 cut(s)	243, 263, 671, 989
MfeI	CAATTG	1 cut(s)	779
MflI	RGATCY	3 cut(s)	121, 731, 877
MhlI	GDGCHC	2 cut(s)	397, 679
MlyI	GAGTC	1 cut(s)	1204
MnlI	CCTC	7 cut(s)	199, 280, 310, 430, 642, 707, 778
Mph1103I	ATGCAT	2 cut(s)	175, 507
MroXI	GAANNNNTTC	1 cut(s)	610
MseI	TTAA	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	722
MwoI	GCNNNNNNNGC	8 cut(s)	44, 69, 78, 103, 179, 188, 401, 497
NdeII	GATC	4 cut(s)	121, 731, 877, 1223
NlaIII	CATG	2 cut(s)	373, 509
NlaIV	GGNNCC	3 cut(s)	210, 718, 929
NmuCI	GTSAC	2 cut(s)	386, 793
NsiI	ATGCAT	2 cut(s)	175, 507
NspV	TTCGAA	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	610
PflFI	GACNNNGTC	1 cut(s)	857
PkrI	GCNGC	4 cut(s)	37, 71, 105, 490
PleI	GAGTC	1 cut(s)	1203
PpsI	GAGTC	1 cut(s)	1203
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	3 cut(s)	210, 718, 929
PspPI	GGNCC	2 cut(s)	208, 927
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	3 cut(s)	121, 731, 877
PsyI	GACNNNGTC	1 cut(s)	857
RsaI	GTAC	1 cut(s)	959
RsaNI	GTAC	1 cut(s)	958
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	36, 70, 104, 489
Sau3AI	GATC	4 cut(s)	121, 731, 877, 1223
Sau96I	GGNCC	2 cut(s)	208, 927
SchI	GAGTC	1 cut(s)	1204
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	397, 679
SfaNI	GCATC	5 cut(s)	182, 535, 753, 988, 1108
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	2 cut(s)	208, 927
SsiI	CCGC	3 cut(s)	33, 61, 841
SspMI	CTAG	1 cut(s)	1203
StyD4I	CCNGG	1 cut(s)	720
TaaI	ACNGT	2 cut(s)	392, 984
TaqI	TCGA	6 cut(s)	7, 51, 85, 154, 761, 937
TatI	WGTACW	1 cut(s)	957
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	5 cut(s)	133, 272, 1071, 1132, 1189
TseFI	GTSAC	2 cut(s)	386, 793
TseI	GCWGC	4 cut(s)	35, 69, 103, 488
Tsp45I	GTSAC	2 cut(s)	386, 793
TspDTI	ATGAA	5 cut(s)	38, 378, 923, 934, 1203
TspGWI	ACGGA	2 cut(s)	557, 940
TspRI	CASTG	5 cut(s)	133, 272, 1071, 1132, 1189
Tth111I	GACNNNGTC	1 cut(s)	857
VneI	GTGCAC	1 cut(s)	393
VpaK11BI	GGWCC	2 cut(s)	208, 927
XapI	RAATTY	2 cut(s)	466, 1079
XbaI	TCTAGA	1 cut(s)	1202
XmnI	GAANNNNTTC	1 cut(s)	610
XspI	CTAG	1 cut(s)	1203
Zsp2I	ATGCAT	2 cut(s)	175, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.