Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006918

Physical Location & Seq

Genomic Coordinates Reverse (-)

59710193 .. 59719402

Gene Structure 9210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG411300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGGCGAGGCAGTGGACTCTTTCCCTACGAAGCCGACGACTAGTTCAGTGACGATCGGCTCGTCGCTGATTCCGATAATCAACAAACTGCAGGACATTCTGGCTCCCGTAGCCGTAGGCAGCGAATTATCGAAGATTTCGCTGCCGCAAGTGGCGGTTGTGGGAAGCCAAAGCAGCGGCAAATCCAGCGTCCTCGAGGCGCTCGTCGGCCGTGACTTCCTCCCTCGCGGCTGCGATATTTGCACTCGTAGACCTCTCGTCTTGATGCTCGAGAATCGCCCGCCCAATCCCGCCCAAGATGCCGCCCTAACCGAGTGGGGCGAGTTTCGGCATTTGCCTGGAAAGCGCTTCTACGACTTCACCAGCATTCGCCGAGAGATTCAGTCTGAGACTGAAAGAGAGGCAGGATTGAACAAAGGCGTTTCGGATAAACAAATTCGGCTCAAGATTACTTCTCCGAATGTGCTTAATATGACGCTTGTTGATTTGCCTGGCATTACTAAGGTTCCGGTGGGAGATCAACCTAGTGACATAGAATCAAGGATCAGGAAGATGATAATGGGACATATTAGGCAAGAAAATTGCATTATATTGGCAGTTACTCCTGCCAACGCTGATTTAGCCACCTCTGATGCACTGCAACTCGCTAGAGAAGCTGACCCTACTGGTTTTCGTACCATTGGTGTCATCACCAAGCTTGATATAATGGACAGGGGCACCGATGCCAGCAACTTTTTGCTCGGGAAAGTTGTTCCCCTTAAGCTCGGTTATGTTGGTGTTGTCAATCGTTGTCAGGAGGACATCAATAAAAACCGTAGCATTGCTGCAGCACTTGCTTATGAGGACAAATTCTTCCGTGATAATCCAGTATATAGCAGTCTCTCTGATCGTTGCGGCATTCCCCAGTTAGCAAGGAAGCTGAATCAGATTCTGGAGCACCATATCAGGATTGTTCTCCCTGGTTTGAAGGCTGAGTTGAATTCTCAGATGAATGCTATTTATAAAGAACTACAAACATATGGAAAAGTTATGGAATCCAAAACAGATCTGGGAGCAACTTTGTTGAACATTTTGTCAAAATACTGTGAAGCTTTTACTGCCATGTTGGATGGAAAAAATCCGGAGATGTCAACTAAAGAATTGTCAGGAGGAGCCAGGATCCAGTACATTTTCCAGTCAATTTTTGTAAAAAGCTTGCAGGAAGTAGATCCCTGTGATGATGTAACTGATGATGATATTCGAACGGCCATTCAAAATGCATCTGGTGCAAGAAATGCTTTATTTGTGCCTGAGGTCCCATTTGAAGTTTTAGTTAGAAGACAGATTGCACGCTTGTTAGACCCAAGCCTTCAGTGTCTTCGTTTTGTTTATGAGGAACTGGTTAAGATTAGTCGCACTTGTGAGGTAAATGAGTTGCAAAGGTTTCCAGTATTGAGAATGCGTTTGGATGAAGTCATGGTAAACTTTTTGCGTGACGGTGCACAGCCTGCTGAGAGAATGATAGAAAATCTTATTGAGATGGAGGTAGATTATATAAACACTTCGCACCCAAATTTTTTAGGTGGGAACAGAGCTGCTGAGATTGCTATGCATGAGTTGAAATCACCACAGATATCTCTGGGCATAACGGATGCTGAAGCCCAAACTTCTCGGGTGGCTCGGGCAAAGATTGGACAATTACCAAATCAGGGAAGTCGTTCACAGCTGAATAACAATAAATCTGTATCTGGTTCTACAAGGACTTGGACTCTTCCATTATTATTTGGGAATTGGACATCGTCTGGAGGCTCCCTGGATAGCAGATCTTTTGGTGAACAGAACCATTCACAATCGATGCCCCCTGTAATCCAATTGAGAGAGCCCCCATCCATCTTAAGGCCAGTTGAAGCGACAGAGCATAAAGCAGTGGAAATTATTGTAACCAAATTACTCCTGCGGTCATATTATGACATTGTCAGAAAAAACATTCAAGATCTTGTTCCAAAAGCAATTATGCACTTTCTGGTCAATCTTACAAAACGGACCCTTCATCGAACCTTCATTCAAAAGTTGTACAGAGAGAACCTGTTTGAAGAACTGTTGCAGGAGCAGGATGCACTTGTATTGAAAAGGAAACATAACCAAGAATTGCTCCGAGTTTTGGAACAATCTTTGCAGACACTGGAGAAAGTTGAATTTGATGTCTCATCCCATACTTCAAGTTTTGGAACTGATGCTTCCACTGAACTTCCAAGAATTACAAGGACTTCACCACCCCATCAACAATACTCAACAACCAGTGGTGAGATGAGTCAATCTAGATACCATTCATTCTCCAGATCATTTGTTACCAACACTACAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0008017 GO:0008092 GO:0015631 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04139 ko04214 ko04217 ko04621 ko04668 map04139 map04214 map04217 map04621 map04668

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

781

Amino Acids

87.27

Weight (kDa)

7.61

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_N	PF00350	51 - 233	3e-53	Dynamin family
Dynamin_M	PF01031	241 - 526	5.8e-105	Dynamin central region
GED	PF02212	635 - 724	3.5e-23	Dynamin GTPase effector domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41351
malus_domestica	MD08G1051800.v1.1 MD15G1043500.v1.1
prunus_persica	Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1 Prupe.1G397000_v2.0.a1
pyrus_communis	pycom08g04330 pycom15g04050
rosa_chinensis	RchiOBHm_Chr6g0299161 RchiOBHm_Chr6g0299171
rosa_laevigata	RLG00000011457 RLG00000011458 RLG00000028024
rosa_multiflora	Rmu_sc0001434.1_g000015 Rmu_sc0001434.1_g000016
rosa_roxburghii	Rroxscaffold_7G00168950 Rroxscaffold_7G00168960
rosa_rugosa	Rorug06G0285900.1
rosa_samantha	Rh6BG405100 Rh6CG411300 Rh6CG411600 Rh6DG398000 Rh6DG398200 Rh6DG398300
rosa_wichuraiana	Rw6G034740 Rw6G034750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1002
AbsI	CCTCGAGG	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	250
AccII	CGCG	1 cut(s)	228
AccIII	TCCGGA	1 cut(s)	1120
AciI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1936
AclWI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AcoI	YGGCCR	2 cut(s)	208, 1245
AcsI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2174
AcuI	CTGAAG	2 cut(s)	1334, 1656
AfaI	GTAC	3 cut(s)	676, 1166, 2054
AfeI	AGCGCT	1 cut(s)	347
AfiI	CCNNNNNNNGG	3 cut(s)	1688, 1875, 2140
AflII	CTTAAG	2 cut(s)	758, 1873
AhdI	GACNNNNNGTC	1 cut(s)	257
AhlI	ACTAGT	1 cut(s)	41
AjnI	CCWGG	5 cut(s)	337, 490, 958, 1154, 1791
AluBI	AGCT	9 cut(s)	656, 697, 763, 919, 1091, 1194, 1574, 1705, 2342
AluI	AGCT	9 cut(s)	656, 697, 763, 919, 1091, 1194, 1574, 1705, 2342
Alw21I	GWGCWC	2 cut(s)	939, 1483
Alw26I	GTCTC	3 cut(s)	383, 884, 2188
Alw44I	GTGCAC	1 cut(s)	1479
AlwI	GGATC	4 cut(s)	551, 1153, 1166, 1202
AlwNI	CAGNNNCTG	2 cut(s)	931, 2161
Ama87I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
Aor13HI	TCCGGA	1 cut(s)	1120
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	3 cut(s)	208, 1245, 1877
ApaLI	GTGCAC	1 cut(s)	1479
ApeKI	GCWGC	7 cut(s)	120, 142, 174, 231, 824, 827, 1574
ApoI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2174
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp700I	GAANNNNTTC	1 cut(s)	1696
AspLEI	GCGC	2 cut(s)	202, 348
AspS9I	GGNCC	2 cut(s)	1294, 2022
AsuHPI	GGTGA	6 cut(s)	352, 682, 1596, 1823, 2241, 2294
AsuII	TTCGAA	1 cut(s)	1240
AvaI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
AvaII	GGWCC	2 cut(s)	1294, 2022
AxyI	CCTNAGG	1 cut(s)	1290
BaeGI	GKGCMC	2 cut(s)	719, 1483
BamHI	GGATCC	1 cut(s)	1158
BanI	GGYRCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	1863
BbsI	GAAGAC	2 cut(s)	1324, 1349
Bbv12I	GWGCWC	2 cut(s)	939, 1483
BbvI	GCAGC	7 cut(s)	129, 132, 186, 218, 811, 839, 1561
BccI	CCATC	5 cut(s)	1103, 1513, 1873, 1877, 2265
BceAI	ACGGC	3 cut(s)	98, 195, 1260
BciT130I	CCWGG	5 cut(s)	339, 492, 960, 1156, 1793
BcoDI	GTCTC	3 cut(s)	383, 884, 2188
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	4 cut(s)	42, 525, 648, 2298
BfmI	CTRYAG	3 cut(s)	89, 825, 2337
BfoI	RGCGCY	2 cut(s)	203, 349
BfrI	CTTAAG	2 cut(s)	758, 1873
BglII	AGATCT	3 cut(s)	1045, 1802, 1972
Bme1390I	CCNGG	5 cut(s)	339, 492, 960, 1156, 1793
Bme18I	GGWCC	2 cut(s)	1294, 2022
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmeT110I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
BmgT120I	GGNCC	2 cut(s)	1294, 2022
BmiI	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1789, 2024
BmrFI	CCNGG	5 cut(s)	339, 492, 960, 1156, 1793
BmrI	ACTGGG	1 cut(s)	898
BmsI	GCATC	9 cut(s)	255, 289, 622, 712, 1268, 1621, 1824, 2083, 2203
BmuI	ACTGGG	1 cut(s)	898
BpiI	GAAGAC	2 cut(s)	1324, 1349
BpmI	CTGGAG	4 cut(s)	953, 1803, 2183, 2299
Bpu14I	TTCGAA	1 cut(s)	1240
BpuEI	CTTGAG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	1832
BsaJI	CCNNGG	2 cut(s)	958, 1791
BsaWI	WCCGGW	2 cut(s)	508, 1120
Bsc4I	CCNNNNNNNGG	3 cut(s)	1688, 1875, 2140
Bse21I	CCTNAGG	1 cut(s)	1290
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	1120
BseBI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1793
BseCI	ATCGAT	1 cut(s)	1832
BseDI	CCNNGG	2 cut(s)	958, 1791
BseGI	GGATG	6 cut(s)	1114, 1453, 1636, 1865, 2098, 2186
BseLI	CCNNNNNNNGG	3 cut(s)	1688, 1875, 2140
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	6 cut(s)	378, 963, 998, 1281, 1482, 1569
BseRI	GAGGAG	1 cut(s)	1164
BseSI	GKGCMC	2 cut(s)	719, 1483
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	7 cut(s)	129, 132, 186, 218, 811, 839, 1561
Bsh1236I	CGCG	1 cut(s)	228
Bsh1285I	CGRYCG	2 cut(s)	57, 211
BshFI	GGCC	3 cut(s)	210, 1247, 1879
BshNI	GGYRCC	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	1832
BsiEI	CGRYCG	2 cut(s)	57, 211
BsiHKAI	GWGCWC	2 cut(s)	939, 1483
BsiHKCI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
BsiSI	CCGG	2 cut(s)	509, 1121
BslFI	GGGAC	2 cut(s)	576, 1280
BslI	CCNNNNNNNGG	3 cut(s)	1688, 1875, 2140
BsmAI	GTCTC	3 cut(s)	383, 884, 2188
BsmFI	GGGAC	2 cut(s)	576, 1280
BsmI	GAATGC	4 cut(s)	366, 897, 997, 1443
BsnI	GGCC	3 cut(s)	210, 1247, 1879
BsoBI	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
Bsp119I	TTCGAA	1 cut(s)	1240
Bsp1286I	GDGCHC	4 cut(s)	719, 939, 1483, 1863
Bsp13I	TCCGGA	1 cut(s)	1120
Bsp1407I	TGTACA	1 cut(s)	2052
BspACI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1936
BspANI	GGCC	3 cut(s)	210, 1247, 1879
BspCNI	CTCAG	6 cut(s)	379, 964, 997, 1282, 1483, 1570
BspDI	ATCGAT	1 cut(s)	1832
BspEI	TCCGGA	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1789, 2024
BspMAI	CTGCAG	2 cut(s)	93, 829
BspPI	GGATC	4 cut(s)	551, 1153, 1166, 1202
BspT104I	TTCGAA	1 cut(s)	1240
BspT107I	GGYRCC	1 cut(s)	716
BspTI	CTTAAG	2 cut(s)	758, 1873
BsrDI	GCAATG	1 cut(s)	819
BsrGI	TGTACA	1 cut(s)	2052
BssECI	CCNNGG	2 cut(s)	958, 1791
Bst2UI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1793
Bst4CI	ACNGT	4 cut(s)	815, 1085, 1478, 2079
Bst6I	CTCTTC	1 cut(s)	1755
BstAFI	CTTAAG	2 cut(s)	758, 1873
BstAPI	GCANNNNNTGC	4 cut(s)	833, 1265, 1274, 1487
BstAUI	TGTACA	1 cut(s)	2052
BstBI	TTCGAA	1 cut(s)	1240
BstC8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
BstDEI	CTNAG	7 cut(s)	387, 501, 972, 984, 1290, 1491, 1578
BstF5I	GGATG	6 cut(s)	1114, 1453, 1636, 1865, 2098, 2186
BstFNI	CGCG	1 cut(s)	228
BstH2I	RGCGCY	2 cut(s)	203, 349
BstHHI	GCGC	2 cut(s)	202, 348
BstMAI	GTCTC	3 cut(s)	383, 884, 2188
BstMCI	CGRYCG	2 cut(s)	57, 211
BstNI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1793
BstSCI	CCNGG	5 cut(s)	337, 490, 958, 1154, 1791
BstSFI	CTRYAG	3 cut(s)	89, 825, 2337
BstSLI	GKGCMC	2 cut(s)	719, 1483
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	7 cut(s)	129, 132, 186, 218, 811, 839, 1561
BstV2I	GAAGAC	2 cut(s)	1324, 1349
BstX2I	RGATCY	5 cut(s)	1045, 1158, 1207, 1802, 1972
BstYI	RGATCY	5 cut(s)	1045, 1158, 1207, 1802, 1972
BstZI	CGGCCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	1832
Bsu36I	CCTNAGG	1 cut(s)	1290
BsuRI	GGCC	3 cut(s)	210, 1247, 1879
BsuTUI	ATCGAT	1 cut(s)	1832
BtsCI	GGATG	6 cut(s)	1114, 1453, 1636, 1865, 2098, 2186
BtsI	GCAGTG	3 cut(s)	18, 635, 1911
BtsIMutI	CAGTG	8 cut(s)	18, 54, 635, 1358, 1911, 2159, 2220, 2284
Cac8I	GCNNGC	5 cut(s)	281, 727, 1196, 1330, 1488
CaiI	CAGNNNCTG	2 cut(s)	931, 2161
CfoI	GCGC	2 cut(s)	202, 348
Cfr13I	GGNCC	2 cut(s)	1294, 2022
ClaI	ATCGAT	1 cut(s)	1832
CseI	GACGC	2 cut(s)	178, 484
Csp6I	GTAC	3 cut(s)	675, 1165, 2053
CviAII	CATG	3 cut(s)	1102, 1456, 1592
CviQI	GTAC	3 cut(s)	675, 1165, 2053
DdeI	CTNAG	7 cut(s)	387, 501, 972, 984, 1290, 1491, 1578
DriI	GACNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	2 cut(s)	208, 1245
EagI	CGGCCG	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	1755
Eam1105I	GACNNNNNGTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	1755
EclXI	CGGCCG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	1863
Eco32I	GATATC	1 cut(s)	1614
Eco47I	GGWCC	2 cut(s)	1294, 2022
Eco47III	AGCGCT	1 cut(s)	347
Eco52I	CGGCCG	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	1334, 1656
Eco81I	CCTNAGG	1 cut(s)	1290
Eco88I	CYCGRG	5 cut(s)	194, 269, 740, 1650, 1659
EcoO109I	RGGNCCY	1 cut(s)	1294
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	5 cut(s)	337, 490, 958, 1154, 1791
EcoRV	GATATC	1 cut(s)	1614
EcoT22I	ATGCAT	2 cut(s)	1261, 1593
EcoT38I	GRGCYC	1 cut(s)	1863
FaeI	CATG	3 cut(s)	1105, 1459, 1595
FalI	AAGNNNNNCTT	2 cut(s)	1261, 1293
FaqI	GGGAC	2 cut(s)	576, 1280
FatI	CATG	3 cut(s)	1101, 1455, 1591
FauI	CCCGC	2 cut(s)	288, 298
FauNDI	CATATG	1 cut(s)	1018
FblI	GTMKAC	1 cut(s)	250
FokI	GGATG	6 cut(s)	1121, 1460, 1643, 1852, 2105, 2173
FriOI	GRGCYC	1 cut(s)	1863
FspBI	CTAG	4 cut(s)	42, 525, 648, 2298
GlaI	GCGC	2 cut(s)	201, 347
GsuI	CTGGAG	4 cut(s)	953, 1803, 2183, 2299
HaeII	RGCGCY	2 cut(s)	203, 349
HaeIII	GGCC	3 cut(s)	210, 1247, 1879
HapII	CCGG	2 cut(s)	509, 1121
HgaI	GACGC	2 cut(s)	178, 484
HhaI	GCGC	2 cut(s)	202, 348
Hin1II	CATG	3 cut(s)	1105, 1459, 1595
Hin6I	GCGC	2 cut(s)	200, 346
HinP1I	GCGC	2 cut(s)	200, 346
HincII	GTYRAC	1 cut(s)	1131
HindII	GTYRAC	1 cut(s)	1131
HindIII	AAGCTT	3 cut(s)	695, 1089, 1192
HpaII	CCGG	2 cut(s)	509, 1121
HphI	GGTGA	6 cut(s)	352, 682, 1596, 1823, 2241, 2294
Hpy166II	GTNNAC	7 cut(s)	16, 251, 1131, 1462, 1481, 1700, 1814
Hpy8I	GTNNAC	7 cut(s)	16, 251, 1131, 1462, 1481, 1700, 1814
Hpy99I	CGWCG	3 cut(s)	40, 67, 209
HpyAV	CCTTC	4 cut(s)	961, 1358, 2036, 2047
HpyCH4III	ACNGT	4 cut(s)	815, 1085, 1478, 2079
HpyF3I	CTNAG	7 cut(s)	387, 501, 972, 984, 1290, 1491, 1578
Hsp92II	CATG	3 cut(s)	1105, 1459, 1595
HspAI	GCGC	2 cut(s)	200, 346
Kpn2I	TCCGGA	1 cut(s)	1120
LmnI	GCTCC	7 cut(s)	109, 934, 1052, 1151, 1793, 2086, 2136
Lsp1109I	GCAGC	7 cut(s)	129, 132, 186, 218, 811, 839, 1561
LweI	GCATC	9 cut(s)	255, 289, 622, 712, 1268, 1621, 1824, 2083, 2203
MaeI	CTAG	4 cut(s)	42, 525, 648, 2298
MaeIII	GTNAC	8 cut(s)	49, 212, 527, 598, 1222, 1472, 1918, 2326
MboII	GAAGA	7 cut(s)	145, 562, 844, 1329, 1349, 1742, 2084
MfeI	CAATTG	1 cut(s)	1850
MflI	RGATCY	5 cut(s)	1045, 1158, 1207, 1802, 1972
MhlI	GDGCHC	4 cut(s)	719, 939, 1483, 1863
MlyI	GAGTC	3 cut(s)	11, 1741, 2299
MmeI	TCCRAC	1 cut(s)	1086
Mph1103I	ATGCAT	2 cut(s)	1261, 1593
MroI	TCCGGA	1 cut(s)	1120
MroXI	GAANNNNTTC	1 cut(s)	1696
MseI	TTAA	4 cut(s)	468, 759, 1383, 1874
MspA1I	CMGCKG	2 cut(s)	177, 1705
MspCI	CTTAAG	2 cut(s)	758, 1873
MspI	CCGG	2 cut(s)	509, 1121
MspR9I	CCNGG	5 cut(s)	339, 492, 960, 1156, 1793
MunI	CAATTG	1 cut(s)	1850
Mva1269I	GAATGC	4 cut(s)	366, 897, 997, 1443
MvaI	CCWGG	5 cut(s)	339, 492, 960, 1156, 1793
MvnI	CGCG	1 cut(s)	228
NdeI	CATATG	1 cut(s)	1018
NlaIII	CATG	3 cut(s)	1105, 1459, 1595
NlaIV	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1789, 2024
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	4 cut(s)	49, 212, 527, 1472
NsiI	ATGCAT	2 cut(s)	1261, 1593
NspV	TTCGAA	1 cut(s)	1240
PaeR7I	CTCGAG	2 cut(s)	194, 269
PcsI	WCGNNNNNNNCGW	4 cut(s)	35, 59, 71, 201
PctI	GAATGC	4 cut(s)	366, 897, 997, 1443
PdmI	GAANNNNTTC	1 cut(s)	1696
PfeI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
PflFI	GACNNNGTC	2 cut(s)	1777, 1952
Ple19I	CGATCG	1 cut(s)	57
PleI	GAGTC	3 cut(s)	11, 1741, 2298
PpsI	GAGTC	3 cut(s)	11, 1741, 2298
PpuMI	RGGWCCY	1 cut(s)	1294
PsiI	TTATAA	1 cut(s)	1002
Psp5II	RGGWCCY	1 cut(s)	1294
Psp6I	CCWGG	5 cut(s)	337, 490, 958, 1154, 1791
PspGI	CCWGG	5 cut(s)	337, 490, 958, 1154, 1791
PspN4I	GGNNCC	8 cut(s)	105, 507, 718, 1153, 1160, 1296, 1789, 2024
PspPI	GGNCC	2 cut(s)	1294, 2022
PspPPI	RGGWCCY	1 cut(s)	1294
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	93, 829
PstNI	CAGNNNCTG	2 cut(s)	931, 2161
PsuI	RGATCY	5 cut(s)	1045, 1158, 1207, 1802, 1972
PsyI	GACNNNGTC	2 cut(s)	1777, 1952
PvuI	CGATCG	1 cut(s)	57
PvuII	CAGCTG	1 cut(s)	1705
RsaI	GTAC	3 cut(s)	676, 1166, 2054
RsaNI	GTAC	3 cut(s)	675, 1165, 2053
SaqAI	TTAA	4 cut(s)	468, 759, 1383, 1874
Sau96I	GGNCC	2 cut(s)	1294, 2022
SchI	GAGTC	3 cut(s)	11, 1741, 2299
ScrFI	CCNGG	5 cut(s)	339, 492, 960, 1156, 1793
SduI	GDGCHC	4 cut(s)	719, 939, 1483, 1863
SfaNI	GCATC	9 cut(s)	255, 289, 622, 712, 1268, 1621, 1824, 2083, 2203
SfcI	CTRYAG	3 cut(s)	89, 825, 2337
Sfr274I	CTCGAG	2 cut(s)	194, 269
SfuI	TTCGAA	1 cut(s)	1240
SinI	GGWCC	2 cut(s)	1294, 2022
SlaI	CTCGAG	2 cut(s)	194, 269
SmlI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1873
SmoI	CTYRAG	5 cut(s)	194, 269, 443, 758, 1873
SpeI	ACTAGT	1 cut(s)	41
SsiI	CCGC	9 cut(s)	146, 155, 177, 228, 281, 291, 303, 894, 1936
SspMI	CTAG	4 cut(s)	42, 525, 648, 2298
StyD4I	CCNGG	5 cut(s)	337, 490, 958, 1154, 1791
TaaI	ACNGT	4 cut(s)	815, 1085, 1478, 2079
TaqI	TCGA	6 cut(s)	131, 195, 270, 1240, 1832, 2032
TatI	WGTACW	2 cut(s)	1164, 2052
TauI	GCSGC	5 cut(s)	148, 180, 231, 305, 897
TfiI	GAWTC	7 cut(s)	70, 274, 379, 536, 922, 928, 1034
Tru1I	TTAA	4 cut(s)	468, 759, 1383, 1874
Tru9I	TTAA	4 cut(s)	468, 759, 1383, 1874
TscAI	CASTG	8 cut(s)	18, 54, 642, 1358, 1911, 2166, 2227, 2284
TseFI	GTSAC	4 cut(s)	49, 212, 527, 1472
TseI	GCWGC	7 cut(s)	120, 142, 174, 231, 824, 827, 1574
Tsp45I	GTSAC	4 cut(s)	49, 212, 527, 1472
TspDTI	ATGAA	5 cut(s)	1004, 1464, 2018, 2029, 2298
TspGWI	ACGGA	3 cut(s)	845, 1643, 2035
TspRI	CASTG	8 cut(s)	18, 54, 642, 1358, 1911, 2166, 2227, 2284
Tth111I	GACNNNGTC	2 cut(s)	1777, 1952
Vha464I	CTTAAG	2 cut(s)	758, 1873
VneI	GTGCAC	1 cut(s)	1479
VpaK11BI	GGWCC	2 cut(s)	1294, 2022
XapI	RAATTY	5 cut(s)	435, 848, 979, 1552, 2174
XbaI	TCTAGA	1 cut(s)	2297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XhoI	CTCGAG	2 cut(s)	194, 269
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	1696
XspI	CTAG	4 cut(s)	42, 525, 648, 2298
Zsp2I	ATGCAT	2 cut(s)	1261, 1593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.