RchiOBHm_Chr7g0186461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014862
Physical Location & Seq
Forward (+)
6383244 .. 6384160
917 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16643

Sequence Viewer

Length: 363 bp
ATGCTTTGTTGTTTTGATCTCATAACACTTGTGTTTGGTGGATTAGCCAGGAAGATGTTAACAAGCTTCATTCCAGAGATTAAGGACTTCATCTTAGTGAGCTCGCCGCTTCTGGATCTGGCCTCAAGGAGTTGTGAAACCGTCTACACCTCTCTGGCCAGCAATAAATTCAGAGAAACAAAGTCGTCGAGCAACCTGTGCTTGGAGAACTCCGACAAGATGGAGTACCCAGCGGTGTCTGTCCGTCAGAGAATAGGATTTAAGTTTTGCTTTAGGTTTCGCATTTTGCTAGGAAATGTCATCATCCCACCTGATTGCAATTTGCAGATGAAGAAGGAAATAGAAATGGAGAAGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

8.8

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AciI CCGC 2 cut(s) 107, 233
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 202
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 66, 102
AluI AGCT 2 cut(s) 66, 102
Alw21I GWGCWC 1 cut(s) 104
AlwI GGATC 1 cut(s) 123
AoxI GGCC 2 cut(s) 120, 156
ApoI RAATTY 1 cut(s) 167
BalI TGGCCA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 104
BccI CCATC 1 cut(s) 214
BciT130I CCWGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 202
BseYI CCCAGC 1 cut(s) 229
BshFI GGCC 2 cut(s) 122, 158
BsiHKAI GWGCWC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 202
BsnI GGCC 2 cut(s) 122, 158
Bsp1286I GDGCHC 1 cut(s) 104
Bsp143I GATC 2 cut(s) 16, 115
BspACI CCGC 2 cut(s) 107, 233
BspANI GGCC 2 cut(s) 122, 158
BspPI GGATC 1 cut(s) 123
BssMI GATC 2 cut(s) 16, 115
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 104, 160
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 2 cut(s) 19, 118
BstMBI GATC 2 cut(s) 16, 115
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BsuRI GGCC 2 cut(s) 122, 158
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 104, 160
Csp6I GTAC 1 cut(s) 226
CviJI RGCY 5 cut(s) 47, 66, 102, 122, 158
CviKI_1 RGCY 5 cut(s) 47, 66, 102, 122, 158
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 18, 117
DpnII GATC 2 cut(s) 16, 115
EaeI YGGCCR 1 cut(s) 156
Ecl136II GAGCTC 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 104
Eco53kI GAGCTC 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 104
FaiI YATR 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 104
Fsp4HI GCNGC 1 cut(s) 107
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 107
GsaI CCCAGC 1 cut(s) 233
HaeIII GGCC 2 cut(s) 122, 158
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 64
HpaI GTTAAC 1 cut(s) 60
Hpy166II GTNNAC 2 cut(s) 60, 145
Hpy188I TCNGA 3 cut(s) 173, 214, 249
Hpy188III TCNNGA 2 cut(s) 74, 113
Hpy8I GTNNAC 2 cut(s) 60, 145
Hpy99I CGWCG 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 2 cut(s) 318, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 94
KspAI GTTAAC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 16, 115
MaeI CTAG 1 cut(s) 290
MalI GATC 2 cut(s) 18, 117
MboI GATC 2 cut(s) 16, 115
MboII GAAGA 2 cut(s) 64, 343
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 104
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 167, 319
MluNI TGGCCA 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 2 cut(s) 133, 160
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 59, 81, 261
MslI CAYNNNNRTG 1 cut(s) 95
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 16, 115
PkrI GCNGC 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 47
PspFI CCCAGC 1 cut(s) 229
PspGI CCWGG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 104
SaqAI TTAA 3 cut(s) 59, 81, 261
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 16, 115
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 1 cut(s) 104
SetI ASST 6 cut(s) 68, 104, 152, 198, 278, 313
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 124
SmoI CTYRAG 1 cut(s) 124
Sse9I AATT 2 cut(s) 167, 319
SsiI CCGC 2 cut(s) 107, 233
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 142
TaqI TCGA 1 cut(s) 188
TasI AATT 2 cut(s) 167, 319
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 3 cut(s) 59, 81, 261
Tru9I TTAA 3 cut(s) 59, 81, 261
TspDTI ATGAA 3 cut(s) 58, 79, 344
TspGWI ACGGA 1 cut(s) 233
XapI RAATTY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.