Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004340.1

Orthogroup ID

OG0014862

Physical Location & Seq

Genomic Coordinates Reverse (-)

78843 .. 79972

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004340.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgaacttatggtgtgatgttagttgcggtgaggaagccgagtgccacgacggcgtggcccgcctccgtcatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctctctctttctctgatccctctgtctgaaatgtcaggtaaattccaagtcttagatctggaggccaagagtcgtgaaactgtctacacggctccggcctgcaataaattcagagaagcaaagccgttgagcaagttgtgcttggagaactccgacgagatggagtcctcgacgggatggcaaaaatccccagtgggggagctccattggatacccgcccctaatggagggagaattcggggacaaatggggaatggggatggggatccccaatccctgctatctaagattggggatggggcggggatggtattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

eIF-1a

Protein Analysis

145

Amino Acids

15.73

Weight (kDa)

6.19

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014862)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0186461
rosa_multiflora	Rmu_sc0001460.1_g000010 Rmu_sc0003202.1_g000011 Rmu_sc0003267.1_g000003 Rmu_sc0003693.1_g000007 Rmu_sc0004041.1_g000004 Rmu_sc0004340.1_g000028 Rmu_sc0005063.1_g000021 Rmu_sc0005588.1_g000005 Rmu_sc0006838.1_g000021 Rmu_sc0008050.1_g000009 Rmu_sc0012554.1_g000006 Rmu_sc0015616.1_g000002 Rmu_sc0030539.1_g000001 Rmu_ssc0000167.1_g000010 Rmu_ssc0000387.1_g000035 Rmu_ssc0000454.1_g000013

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	5 cut(s)	27, 61, 108, 336, 422
AclWI	GGATC	3 cut(s)	130, 380, 393
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	3 cut(s)	161, 227, 354
AfiI	CCNNNNNNNGG	3 cut(s)	315, 316, 347
AluBI	AGCT	2 cut(s)	85, 322
AluI	AGCT	2 cut(s)	85, 322
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	3 cut(s)	130, 380, 393
AoxI	GGCC	4 cut(s)	57, 112, 183, 216
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	3 cut(s)	161, 227, 354
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	385
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	5 cut(s)	274, 291, 374, 410, 421
BceAI	ACGGC	3 cut(s)	67, 225, 229
BciVI	GTATCC	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	324
BglI	GCCNNNNNGGC	1 cut(s)	51
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	86, 108
BlsI	GCNGC	2 cut(s)	87, 109
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	2 cut(s)	213, 387
BmrI	ACTGGG	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	305
BpmI	CTGGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 316, 347
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	384
BseGI	GGATG	4 cut(s)	302, 385, 421, 432
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	3 cut(s)	315, 316, 347
BseNI	ACTGG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	59, 114, 185, 218
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	78, 111, 215
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	3 cut(s)	315, 316, 347
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	59, 114, 185, 218
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	135, 175, 385
BspACI	CCGC	5 cut(s)	27, 61, 108, 336, 422
BspANI	GGCC	4 cut(s)	59, 114, 185, 218
BspLI	GGNNCC	2 cut(s)	213, 387
BspPI	GGATC	3 cut(s)	130, 380, 393
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	110
BssMI	GATC	3 cut(s)	135, 175, 385
Bst4CI	ACNGT	1 cut(s)	202
BstAPI	GCANNNNNTGC	1 cut(s)	258
BstC8I	GCNNGC	4 cut(s)	61, 83, 112, 220
BstDEI	CTNAG	2 cut(s)	172, 405
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	4 cut(s)	302, 385, 421, 432
BstKTI	GATC	3 cut(s)	138, 178, 388
BstMBI	GATC	3 cut(s)	135, 175, 385
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 60, 258
BstV1I	GCAGC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	175, 385
BstYI	RGATCY	2 cut(s)	175, 385
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	4 cut(s)	59, 114, 185, 218
BtsCI	GGATG	4 cut(s)	302, 385, 421, 432
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	4 cut(s)	61, 83, 112, 220
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	58
CviJI	RGCY	9 cut(s)	38, 59, 85, 114, 185, 212, 218, 244, 322
CviKI_1	RGCY	9 cut(s)	38, 59, 85, 114, 185, 212, 218, 244, 322
DdeI	CTNAG	2 cut(s)	172, 405
DpnI	GATC	3 cut(s)	137, 177, 387
DpnII	GATC	3 cut(s)	135, 175, 385
EaeI	YGGCCR	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco53kI	GAGCTC	1 cut(s)	322
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRI	GAATTC	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	324
FaiI	YATR	3 cut(s)	10, 72, 117
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	375
FauI	CCCGC	3 cut(s)	68, 343, 415
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	86, 108
FokI	GGATG	3 cut(s)	309, 392, 428
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	86, 108
GluI	GCNGC	2 cut(s)	86, 108
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	4 cut(s)	59, 114, 185, 218
HapII	CCGG	3 cut(s)	78, 111, 215
HinfI	GANTC	2 cut(s)	190, 284
HpaII	CCGG	3 cut(s)	78, 111, 215
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	135, 148, 233, 274
Hpy188III	TCNNGA	3 cut(s)	100, 179, 194
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	3 cut(s)	53, 278, 295
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	2 cut(s)	88, 222
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 60, 258
HpyF3I	CTNAG	2 cut(s)	172, 405
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	135, 175, 385
LmnI	GCTCC	3 cut(s)	217, 319, 327
LpnPI	CCDG	9 cut(s)	85, 91, 124, 141, 164, 228, 232, 324, 410
Lsp1109I	GCAGC	1 cut(s)	72
MalI	GATC	3 cut(s)	137, 177, 387
MboI	GATC	3 cut(s)	135, 175, 385
MflI	RGATCY	2 cut(s)	175, 385
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	3 cut(s)	161, 227, 354
MlyI	GAGTC	2 cut(s)	199, 293
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	6 cut(s)	25, 74, 150, 175, 298, 341
MroNI	GCCGGC	1 cut(s)	110
MspI	CCGG	3 cut(s)	78, 111, 215
MwoI	GCNNNNNNNGC	3 cut(s)	51, 60, 258
NaeI	GCCGGC	1 cut(s)	112
NdeII	GATC	3 cut(s)	135, 175, 385
NgoMIV	GCCGGC	1 cut(s)	110
NlaIV	GGNNCC	2 cut(s)	213, 387
NmeAIII	GCCGAG	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	87, 109
PleI	GAGTC	2 cut(s)	198, 292
PpsI	GAGTC	2 cut(s)	198, 292
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	2 cut(s)	213, 387
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	175, 385
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	2 cut(s)	86, 108
Sau3AI	GATC	3 cut(s)	135, 175, 385
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	199, 293
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	4 cut(s)	87, 99, 160, 324
Sse9I	AATT	3 cut(s)	161, 227, 354
SsiI	CCGC	5 cut(s)	27, 61, 108, 336, 422
SstI	GAGCTC	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	290
TasI	AATT	3 cut(s)	161, 227, 354
TauI	GCSGC	1 cut(s)	110
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	3 cut(s)	161, 227, 354
XmiI	GTMKAC	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.