Rmu_sc0006838.1_g000021

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006838.1
Physical Location & Seq
Reverse (-)
62409 .. 62831
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006838.1_g000021.1.cds

Sequence Viewer

Length: 423 bp
atgaacttatgctgtgatgttagttgcggtgaggaagccgagtgccacgacggcgtggccttcctttgttatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctgtctctctctctgatccctctgtctgaaatctcaggtaaattccaagtctcagatctggaggccaagagtggtgaaactgtctacaccgttctggcctgcaataaattcaaagaagcaaaaccgttgagcaagttgtgcttggagaactccgacgagatggagtccccggcggtgtccgtccagcagagaattggattcaagttttgctttgggttttgcattttgctaggaaatgtcatcattccatctgattgcattttgcagatgaaaaaagaaatggaaatggagaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.47

Weight (kDa)

5.62

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AciI CCGC 3 cut(s) 27, 108, 293
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 161, 227
AgsI TTSAA 2 cut(s) 232, 322
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 129, 175
AlwI GGATC 1 cut(s) 130
AoxI GGCC 4 cut(s) 57, 112, 183, 216
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 161, 227
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 41, 206
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 274, 376
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 129, 175
BfaI CTAG 1 cut(s) 350
BglI GCCNNNNNGGC 1 cut(s) 51
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 86, 108
BlsI GCNGC 2 cut(s) 87, 109
Bme1390I CCNGG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 290
BpmI CTGGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 288
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 288
BseMII CTCAG 2 cut(s) 168, 186
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 4 cut(s) 59, 114, 185, 218
BsiSI CCGG 3 cut(s) 78, 111, 290
BslFI GGGAC 1 cut(s) 271
BsmAI GTCTC 2 cut(s) 129, 175
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 4 cut(s) 59, 114, 185, 218
Bsp143I GATC 2 cut(s) 135, 175
BspACI CCGC 3 cut(s) 27, 108, 293
BspANI GGCC 4 cut(s) 59, 114, 185, 218
BspCNI CTCAG 2 cut(s) 167, 185
BspPI GGATC 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 2 cut(s) 135, 175
Bst4CI ACNGT 3 cut(s) 202, 211, 246
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 83, 112, 220
BstDEI CTNAG 2 cut(s) 154, 172
BstKTI GATC 2 cut(s) 138, 178
BstMAI GTCTC 2 cut(s) 129, 175
BstMBI GATC 2 cut(s) 135, 175
BstMWI GCNNNNNNNGC 2 cut(s) 51, 258
BstSCI CCNGG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 4 cut(s) 59, 114, 185, 218
Cac8I GCNNGC 3 cut(s) 83, 112, 220
Cfr10I RCCGGY 1 cut(s) 110
CviJI RGCY 6 cut(s) 38, 59, 85, 114, 185, 218
CviKI_1 RGCY 6 cut(s) 38, 59, 85, 114, 185, 218
DdeI CTNAG 2 cut(s) 154, 172
DpnI GATC 2 cut(s) 137, 177
DpnII GATC 2 cut(s) 135, 175
EaeI YGGCCR 1 cut(s) 112
FaiI YATR 3 cut(s) 10, 72, 117
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 314, 346
FaqI GGGAC 1 cut(s) 271
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 86, 108
Fsp4HI GCNGC 2 cut(s) 86, 108
FspBI CTAG 1 cut(s) 350
GluI GCNGC 2 cut(s) 86, 108
GsuI CTGGAG 1 cut(s) 200
HaeIII GGCC 4 cut(s) 59, 114, 185, 218
HapII CCGG 3 cut(s) 78, 111, 290
HinfI GANTC 2 cut(s) 284, 318
HpaII CCGG 3 cut(s) 78, 111, 290
HphI GGTGA 2 cut(s) 41, 206
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 5 cut(s) 135, 148, 175, 274, 373
Hpy188III TCNNGA 2 cut(s) 100, 179
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 2 cut(s) 53, 278
HpyAV CCTTC 2 cut(s) 70, 88
HpyCH4III ACNGT 3 cut(s) 202, 211, 246
HpyCH4V TGCA 5 cut(s) 88, 222, 342, 378, 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 258
HpyF3I CTNAG 2 cut(s) 154, 172
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 135, 175
LpnPI CCDG 9 cut(s) 85, 91, 124, 141, 164, 200, 232, 303, 317
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 350
MalI GATC 2 cut(s) 137, 177
MboI GATC 2 cut(s) 135, 175
MflI RGATCY 1 cut(s) 175
MluCI AATT 3 cut(s) 161, 227, 312
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 3 cut(s) 25, 150, 175
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 3 cut(s) 78, 111, 290
MspR9I CCNGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 51, 258
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 290
NdeII GATC 2 cut(s) 135, 175
NgoMIV GCCGGC 1 cut(s) 110
NmeAIII GCCGAG 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 87, 109
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 175
SatI GCNGC 2 cut(s) 86, 108
Sau3AI GATC 2 cut(s) 135, 175
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 290
SetI ASST 3 cut(s) 87, 99, 160
Sse9I AATT 3 cut(s) 161, 227, 312
SsiI CCGC 3 cut(s) 27, 108, 293
SspMI CTAG 1 cut(s) 350
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 202, 211, 246
TasI AATT 3 cut(s) 161, 227, 312
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 318
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 404
TspGWI ACGGA 1 cut(s) 289
XapI RAATTY 2 cut(s) 161, 227
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.