Rmu_sc0003202.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003202.1
OG0014862
Physical Location & Seq
Reverse (-)
56832 .. 59024
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003202.1_g000011.1.cds

Sequence Viewer

Length: 837 bp
atggctaccttgcaaaaattcaagctcctcgccactcaatgccccgtcgttgccttaagccccatgcgcagcccatccgccagccctgtcatccacctccgccgccataaaaccctcagattgttcctcacccgccccgacttccaccgattgccttgccggagtaaatctcagtctccttcacttttgcagattttgattcaattacaaagacatagactatttttgaaattcatgaacttatgttgtgatgttagttgcggtgaggaagccgggtgccacgacggcgtggcccgcctccgtcatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctctctctctctctctctctgatccttctgtctgaaatctcaggtaaatttcaagtctcagatctggaggccaagtgtcgtgaaaccgtctacaccgctccagcctgcaataaattcagagaagcaaagccatcgagcaagttgtgcttagagaactccgcttggagaactctgacgagatggagtcccccgtggtgttcgtccatcagagaattggattcaagttttgctttgggacgaaaatttccagaatttgcaaaggaggccagatttccaaaaacagaaacccagctctgtttctctctccccgagcccgcgtttgcctctccacttcgccggcttcgttcttcctcctccggccaccatcggacacaattccaagtggtctttcttcgcctcaacctcctctacacgtctgtggtaaccatcgagcgtgggatgagttgtggtggccgctgcaaggccgagaaggagccgcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

278

Amino Acids

31.5

Weight (kDa)

10.06

Isoelectric Point (pI)

73.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 452
AccI GTMKAC 1 cut(s) 444
AccII CGCG 2 cut(s) 671, 832
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 3 cut(s) 346, 712, 805
AcsI RAATTY 6 cut(s) 17, 230, 401, 467, 596, 605
AfiI CCNNNNNNNGG 1 cut(s) 814
AflII CTTAAG 1 cut(s) 55
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 5 cut(s) 22, 203, 229, 407, 576
AjiI CACGTC 1 cut(s) 768
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AleI CACNNNNGTG 1 cut(s) 770
AluBI AGCT 3 cut(s) 25, 319, 646
AluI AGCT 3 cut(s) 25, 319, 646
Alw26I GTCTC 2 cut(s) 180, 415
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 662
AoxI GGCC 7 cut(s) 291, 346, 423, 618, 712, 805, 816
ApeKI GCWGC 3 cut(s) 69, 319, 810
ApoI RAATTY 6 cut(s) 17, 230, 401, 467, 596, 605
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 2 cut(s) 121, 275
AvaI CYCGRG 1 cut(s) 662
BanI GGYRCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 669
BbvI GCAGC 3 cut(s) 81, 306, 797
BccI CCATC 6 cut(s) 82, 493, 528, 566, 726, 788
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 4 cut(s) 138, 172, 468, 502
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 180, 415
BfrI CTTAAG 1 cut(s) 55
BglI GCCNNNNNGGC 1 cut(s) 285
BglII AGATCT 1 cut(s) 415
BisI GCNGC 7 cut(s) 70, 103, 320, 342, 808, 811, 830
BlsI GCNGC 7 cut(s) 71, 104, 321, 343, 809, 812, 831
Bme1390I CCNGG 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 662
BmgBI CACGTC 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 278, 828
BmrFI CCNGG 1 cut(s) 274
BplI GAGNNNNNCTC 2 cut(s) 154, 186
BpmI CTGGAG 2 cut(s) 438, 440
BpuMI CCSGG 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 545
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse118I RCCGGY 2 cut(s) 344, 690
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 3 cut(s) 74, 90, 798
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMII CTCAG 4 cut(s) 130, 185, 408, 426
BseRI GAGGAG 3 cut(s) 17, 697, 749
BseXI GCAGC 3 cut(s) 81, 306, 797
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 671, 832
BshFI GGCC 7 cut(s) 293, 348, 425, 620, 714, 807, 818
BshNI GGYRCC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 662
BsiSI CCGG 6 cut(s) 160, 273, 312, 345, 691, 711
BslFI GGGAC 2 cut(s) 525, 603
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 2 cut(s) 180, 415
BsmFI GGGAC 2 cut(s) 525, 603
BsnI GGCC 7 cut(s) 293, 348, 425, 620, 714, 807, 818
BsoBI CYCGRG 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 2 cut(s) 375, 415
BspANI GGCC 7 cut(s) 293, 348, 425, 620, 714, 807, 818
BspCNI CTCAG 4 cut(s) 129, 184, 407, 425
BspFNI CGCG 2 cut(s) 671, 832
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 278, 828
BspPI GGATC 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 276
BspTI CTTAAG 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 452
BsrFI RCCGGY 2 cut(s) 344, 690
BssAI RCCGGY 2 cut(s) 344, 690
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 2 cut(s) 375, 415
Bst4CI ACNGT 1 cut(s) 442
BstAFI CTTAAG 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 498
BstC8I GCNNGC 7 cut(s) 82, 295, 317, 346, 460, 669, 692
BstDEI CTNAG 5 cut(s) 116, 171, 394, 412, 502
BstDSI CCRYGG 1 cut(s) 545
BstEII GGTNACC 1 cut(s) 775
BstF5I GGATG 3 cut(s) 74, 90, 798
BstFNI CGCG 2 cut(s) 671, 832
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 378, 418
BstMAI GTCTC 2 cut(s) 180, 415
BstMBI GATC 2 cut(s) 375, 415
BstMWI GCNNNNNNNGC 5 cut(s) 66, 285, 294, 498, 617
BstPI GGTNACC 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 272
BstUI CGCG 2 cut(s) 671, 832
BstV1I GCAGC 3 cut(s) 81, 306, 797
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 7 cut(s) 293, 348, 425, 620, 714, 807, 818
BtgI CCRYGG 1 cut(s) 545
BtrI CACGTC 1 cut(s) 768
BtsCI GGATG 3 cut(s) 74, 90, 798
Cac8I GCNNGC 7 cut(s) 82, 295, 317, 346, 460, 669, 692
CciI TCATGA 1 cut(s) 234
CfoI GCGC 1 cut(s) 69
Cfr10I RCCGGY 2 cut(s) 344, 690
Cfr13I GGNCC 1 cut(s) 292
CviAII CATG 2 cut(s) 64, 235
DdeI CTNAG 5 cut(s) 116, 171, 394, 412, 502
DpnI GATC 2 cut(s) 377, 417
DpnII GATC 2 cut(s) 375, 415
EaeI YGGCCR 3 cut(s) 346, 712, 805
EciI GGCGGA 2 cut(s) 67, 89
Eco24I GRGCYC 1 cut(s) 669
Eco88I CYCGRG 1 cut(s) 662
Eco91I GGTNACC 1 cut(s) 775
EcoO65I GGTNACC 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 669
FaeI CATG 2 cut(s) 67, 238
FaiI YATR 7 cut(s) 65, 108, 216, 236, 244, 306, 351
FalI AAGNNNNNCTT 4 cut(s) 485, 517, 568, 600
FaqI GGGAC 2 cut(s) 525, 603
FatI CATG 2 cut(s) 63, 234
FauI CCCGC 3 cut(s) 140, 302, 676
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 7 cut(s) 70, 103, 320, 342, 808, 811, 830
FokI GGATG 3 cut(s) 61, 77, 805
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 7 cut(s) 70, 103, 320, 342, 808, 811, 830
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 1 cut(s) 68
GluI GCNGC 7 cut(s) 70, 103, 320, 342, 808, 811, 830
GsaI CCCAGC 1 cut(s) 646
GsuI CTGGAG 2 cut(s) 438, 440
HaeIII GGCC 7 cut(s) 293, 348, 425, 620, 714, 807, 818
HapII CCGG 6 cut(s) 160, 273, 312, 345, 691, 711
HhaI GCGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 67, 238
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HinfI GANTC 3 cut(s) 199, 538, 572
HpaII CCGG 6 cut(s) 160, 273, 312, 345, 691, 711
HphI GGTGA 2 cut(s) 121, 275
Hpy166II GTNNAC 1 cut(s) 445
Hpy188I TCNGA 8 cut(s) 119, 375, 388, 415, 473, 528, 563, 723
Hpy188III TCNNGA 5 cut(s) 235, 334, 419, 434, 602
Hpy8I GTNNAC 1 cut(s) 445
Hpy99I CGWCG 2 cut(s) 50, 287
HpyAV CCTTC 4 cut(s) 189, 322, 389, 817
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 767
HpyCH4V TGCA 6 cut(s) 13, 190, 322, 462, 611, 813
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 285, 294, 498, 617
HpyF3I CTNAG 5 cut(s) 116, 171, 394, 412, 502
HpySE526I ACGT 1 cut(s) 767
Hsp92II CATG 2 cut(s) 67, 238
HspAI GCGC 1 cut(s) 67
KroI GCCGGC 2 cut(s) 344, 690
KroNI GCCGGC 2 cut(s) 346, 692
Kzo9I GATC 2 cut(s) 375, 415
LmnI GCTCC 3 cut(s) 30, 457, 826
Lsp1109I GCAGC 3 cut(s) 81, 306, 797
MaeII ACGT 1 cut(s) 767
MaeIII GTNAC 1 cut(s) 775
MalI GATC 2 cut(s) 377, 417
MbiI CCGCTC 1 cut(s) 452
MboI GATC 2 cut(s) 375, 415
MboII GAAGA 2 cut(s) 693, 737
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 9 cut(s) 17, 203, 230, 401, 467, 566, 596, 605, 728
MlyI GAGTC 1 cut(s) 547
MroNI GCCGGC 2 cut(s) 344, 690
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 770
MspA1I CMGCKG 1 cut(s) 810
MspCI CTTAAG 1 cut(s) 55
MspI CCGG 6 cut(s) 160, 273, 312, 345, 691, 711
MspR9I CCNGG 1 cut(s) 274
MvnI CGCG 2 cut(s) 671, 832
MwoI GCNNNNNNNGC 5 cut(s) 66, 285, 294, 498, 617
NaeI GCCGGC 2 cut(s) 346, 692
NciI CCSGG 1 cut(s) 274
NdeII GATC 2 cut(s) 375, 415
NgoMIV GCCGGC 2 cut(s) 344, 690
NlaIII CATG 2 cut(s) 67, 238
NlaIV GGNNCC 2 cut(s) 278, 828
NsbI TGCGCA 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 770
PagI TCATGA 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 694
PdiI GCCGGC 2 cut(s) 346, 692
PfeI GAWTC 2 cut(s) 199, 572
PkrI GCNGC 7 cut(s) 71, 104, 321, 343, 809, 812, 831
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PspEI GGTNACC 1 cut(s) 775
PspFI CCCAGC 1 cut(s) 642
PspN4I GGNNCC 2 cut(s) 278, 828
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 1 cut(s) 415
RseI CAYNNNNRTG 1 cut(s) 770
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 7 cut(s) 70, 103, 320, 342, 808, 811, 830
Sau3AI GATC 2 cut(s) 375, 415
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 1 cut(s) 274
SduI GDGCHC 1 cut(s) 669
SetI ASST 9 cut(s) 11, 27, 99, 321, 333, 400, 648, 759, 770
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 9 cut(s) 17, 203, 230, 401, 467, 566, 596, 605, 728
StyD4I CCNGG 1 cut(s) 272
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 770
TaqI TCGA 2 cut(s) 488, 783
TasI AATT 9 cut(s) 17, 203, 230, 401, 467, 566, 596, 605, 728
TauI GCSGC 4 cut(s) 105, 344, 810, 832
TfiI GAWTC 2 cut(s) 199, 572
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseI GCWGC 3 cut(s) 69, 319, 810
TspDTI ATGAA 2 cut(s) 223, 251
TspGWI ACGGA 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 55
XapI RAATTY 6 cut(s) 17, 230, 401, 467, 596, 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.