Rmu_sc0008050.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008050.1
Physical Location & Seq
Reverse (-)
31058 .. 31468
411 bp
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UTR
Exon/CDS
Intron
Rmu_sc0008050.1_g000009.1.cds

Sequence Viewer

Length: 411 bp
atgttagttgcggtgaggaagctgagtgccacgacggcgtggcccgcctccgtcatatctctggcaagctgcacaagaaggtctggattgccgccggccatattctctctctctctctctctgatccctttgtctgaaatctcaggtaaattccaagtctcaaatctggaggccaagagtcttgaaaccgtctacaccgctccggcctgcaataaattcagagaagcaaagccgttgagcaagttgtgcttggagaactccgatgagatagagtccccagcggtgtccgtccatcagagaattggattcaagttttgctttgggttttgcattttgctaggaaatgtcatcaacccatctaattgcattttgcagatgaaaaaggaaatagaaatggagaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.89

Weight (kDa)

8.99

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 192
AciI CCGC 5 cut(s) 11, 45, 92, 198, 281
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 149, 215
AgsI TTSAA 2 cut(s) 185, 310
AluBI AGCT 2 cut(s) 22, 69
AluI AGCT 2 cut(s) 22, 69
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 118
AoxI GGCC 4 cut(s) 41, 96, 171, 204
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 2 cut(s) 149, 215
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 25
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 300, 364
BceAI ACGGC 2 cut(s) 51, 217
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 1 cut(s) 338
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 70, 92
BlsI GCNGC 2 cut(s) 71, 93
BmgT120I GGNCC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 94
BseMII CTCAG 2 cut(s) 14, 156
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 4 cut(s) 43, 98, 173, 206
BsiSI CCGG 2 cut(s) 95, 203
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 259
BsnI GGCC 4 cut(s) 43, 98, 173, 206
Bsp143I GATC 1 cut(s) 123
BspACI CCGC 5 cut(s) 11, 45, 92, 198, 281
BspANI GGCC 4 cut(s) 43, 98, 173, 206
BspCNI CTCAG 2 cut(s) 15, 155
BspPI GGATC 1 cut(s) 118
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 246
BstC8I GCNNGC 4 cut(s) 45, 67, 96, 208
BstDEI CTNAG 2 cut(s) 23, 142
BstKTI GATC 1 cut(s) 126
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 3 cut(s) 35, 44, 246
BstV1I GCAGC 1 cut(s) 56
BsuRI GGCC 4 cut(s) 43, 98, 173, 206
Cac8I GCNNGC 4 cut(s) 45, 67, 96, 208
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 42
CviJI RGCY 7 cut(s) 22, 43, 69, 98, 173, 206, 232
CviKI_1 RGCY 7 cut(s) 22, 43, 69, 98, 173, 206, 232
DdeI CTNAG 2 cut(s) 23, 142
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 96
FaiI YATR 2 cut(s) 56, 101
FalI AAGNNNNNCTT 4 cut(s) 233, 265, 302, 334
FaqI GGGAC 1 cut(s) 259
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 70, 92
Fsp4HI GCNGC 2 cut(s) 70, 92
FspBI CTAG 1 cut(s) 338
GluI GCNGC 2 cut(s) 70, 92
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 4 cut(s) 43, 98, 173, 206
HapII CCGG 2 cut(s) 95, 203
HinfI GANTC 3 cut(s) 178, 272, 306
HpaII CCGG 2 cut(s) 95, 203
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 5 cut(s) 123, 136, 221, 262, 297
Hpy188III TCNNGA 3 cut(s) 84, 167, 182
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 5 cut(s) 72, 210, 330, 366, 373
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 44, 246
HpyF3I CTNAG 2 cut(s) 23, 142
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 8 cut(s) 47, 69, 108, 129, 152, 216, 220, 291
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 1 cut(s) 338
MalI GATC 1 cut(s) 125
MbiI CCGCTC 1 cut(s) 200
MboI GATC 1 cut(s) 123
MluCI AATT 4 cut(s) 149, 215, 300, 361
MlyI GAGTC 2 cut(s) 187, 281
MnlI CCTC 3 cut(s) 9, 58, 163
MroNI GCCGGC 1 cut(s) 94
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 95, 203
MwoI GCNNNNNNNGC 3 cut(s) 35, 44, 246
NaeI GCCGGC 1 cut(s) 96
NdeII GATC 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 2 cut(s) 71, 93
PleI GAGTC 2 cut(s) 186, 280
PpsI GAGTC 2 cut(s) 186, 280
PspFI CCCAGC 1 cut(s) 277
PspPI GGNCC 1 cut(s) 42
SatI GCNGC 2 cut(s) 70, 92
Sau3AI GATC 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 2 cut(s) 187, 281
SetI ASST 4 cut(s) 24, 71, 83, 148
Sse9I AATT 4 cut(s) 149, 215, 300, 361
SsiI CCGC 5 cut(s) 11, 45, 92, 198, 281
SspMI CTAG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 190
TasI AATT 4 cut(s) 149, 215, 300, 361
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 306
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 2 cut(s) 40, 277
XapI RAATTY 2 cut(s) 149, 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.