Rmu_sc0003267.1_g000003

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003267.1
Physical Location & Seq
Forward (+)
18981 .. 19415
435 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003267.1_g000003.1.cds

Sequence Viewer

Length: 435 bp
atgaaattcatgaacttatgctatgatgttagttgtggtgaggaagctgagtgccacgatggcgtggcccgcctccatcatatctctggcaagctgcacaagaaggtctggactgccagccatattctctctctgtctctctctctaatccctcagtctgaaatctcagataaattccaagtctcatttctggaggccaagagttgtgaagccgtctacaccgctccgccctgcaataaattcagagaagcaaagccgtcgagcaagttgtgcttagagaactccgacgagatggagtcctcgacggtgttcgtccatcagagaattggattcaagttttgctttgggtttaacattttgctaggaaatgtcatcatcccatctgattgcattttgcagatgaaaaaggaaatagaaatggagaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

6.58

Isoelectric Point (pI)

55.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 70, 222, 227
AcsI RAATTY 3 cut(s) 5, 173, 239
AgsI TTSAA 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 171, 203
AluBI AGCT 2 cut(s) 47, 94
AluI AGCT 2 cut(s) 47, 94
Alw26I GTCTC 2 cut(s) 141, 187
AoxI GGCC 2 cut(s) 66, 195
ApeKI GCWGC 1 cut(s) 94
ApoI RAATTY 3 cut(s) 5, 173, 239
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 50
BbvI GCAGC 1 cut(s) 81
BccI CCATC 5 cut(s) 53, 84, 286, 324, 388
BceAI ACGGC 2 cut(s) 197, 241
BcgI CGANNNNNNTGC 2 cut(s) 240, 274
BcoDI GTCTC 2 cut(s) 141, 187
BfaI CTAG 1 cut(s) 362
BglI GCCNNNNNGGC 1 cut(s) 60
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmgT120I GGNCC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 212
BseGI GGATG 1 cut(s) 375
BseMII CTCAG 3 cut(s) 39, 167, 180
BseXI GCAGC 1 cut(s) 81
BsgI GTGCAG 1 cut(s) 80
BshFI GGCC 2 cut(s) 68, 197
BsmAI GTCTC 2 cut(s) 141, 187
BsnI GGCC 2 cut(s) 68, 197
BspACI CCGC 3 cut(s) 70, 222, 227
BspANI GGCC 2 cut(s) 68, 197
BspCNI CTCAG 3 cut(s) 40, 166, 179
BspHI TCATGA 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 70, 92, 118
BstDEI CTNAG 4 cut(s) 48, 153, 166, 274
BstF5I GGATG 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 141, 187
BstMWI GCNNNNNNNGC 3 cut(s) 60, 69, 270
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 68, 197
BtsCI GGATG 1 cut(s) 375
Cac8I GCNNGC 3 cut(s) 70, 92, 118
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 1 cut(s) 10
CviJI RGCY 7 cut(s) 47, 68, 94, 120, 197, 212, 256
CviKI_1 RGCY 7 cut(s) 47, 68, 94, 120, 197, 212, 256
DdeI CTNAG 4 cut(s) 48, 153, 166, 274
EciI GGCGGA 1 cut(s) 216
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 19, 24, 81, 123
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 326, 358
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 77
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 2 cut(s) 68, 197
Hin1II CATG 1 cut(s) 13
HinfI GANTC 2 cut(s) 296, 330
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 6 cut(s) 160, 169, 245, 286, 321, 385
Hpy188III TCNNGA 3 cut(s) 10, 109, 191
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 3 cut(s) 262, 290, 307
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 4 cut(s) 97, 234, 390, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 69, 270
HpyF3I CTNAG 4 cut(s) 48, 153, 166, 274
Hsp92II CATG 1 cut(s) 13
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 5 cut(s) 72, 94, 130, 176, 244
Lsp1109I GCAGC 1 cut(s) 81
MaeI CTAG 1 cut(s) 362
MbiI CCGCTC 1 cut(s) 224
MluCI AATT 4 cut(s) 5, 173, 239, 324
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 34, 83, 162, 187, 310
MseI TTAA 1 cut(s) 351
MwoI GCNNNNNNNGC 3 cut(s) 60, 69, 270
NlaIII CATG 1 cut(s) 13
PagI TCATGA 1 cut(s) 9
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspPI GGNCC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 1 cut(s) 95
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 305
SetI ASST 3 cut(s) 49, 96, 108
Sse9I AATT 4 cut(s) 5, 173, 239, 324
SsiI CCGC 3 cut(s) 70, 222, 227
SspMI CTAG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 307
TaqI TCGA 2 cut(s) 260, 302
TasI AATT 4 cut(s) 5, 173, 239, 324
TfiI GAWTC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseI GCWGC 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 17, 26, 416
XapI RAATTY 3 cut(s) 5, 173, 239
XcmI CCANNNNNNNNNTGG 2 cut(s) 83, 323
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.