Rmu_sc0030539.1_g000001

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030539.1
Physical Location & Seq
Reverse (-)
1 .. 591
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030539.1_g000001.1.cds

Sequence Viewer

Length: 282 bp
atgaatttatgctgtgatgttagttgcggtgaggaagccgagtgccacgacagcatggcccgcctccgtcatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctctctctctccctaatccctttgtctgaaatctcaggtaaattccaagtctcagatctggaggccaagagtcgtgaaaccgtctacaccgctccagcctgcaataaattcagagaagcaaagttgtgcttggagaactccgacgagatggagtccttgacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

94

Amino Acids

10.43

Weight (kDa)

5.76

Isoelectric Point (pI)

61.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 212
AccI GTMKAC 1 cut(s) 204
AciI CCGC 4 cut(s) 27, 61, 108, 210
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 3 cut(s) 4, 161, 227
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 175
AoxI GGCC 3 cut(s) 57, 112, 183
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 3 cut(s) 4, 161, 227
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 41
BbvI GCAGC 1 cut(s) 72
BccI CCATC 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 175
BglII AGATCT 1 cut(s) 175
BisI GCNGC 2 cut(s) 86, 108
BlsI GCNGC 2 cut(s) 87, 109
BmgT120I GGNCC 1 cut(s) 58
BpmI CTGGAG 2 cut(s) 198, 200
Bse118I RCCGGY 1 cut(s) 110
BseMII CTCAG 2 cut(s) 168, 186
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 3 cut(s) 59, 114, 185
BsiSI CCGG 2 cut(s) 78, 111
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 3 cut(s) 59, 114, 185
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 4 cut(s) 27, 61, 108, 210
BspANI GGCC 3 cut(s) 59, 114, 185
BspCNI CTCAG 2 cut(s) 167, 185
BsrBI CCGCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 4 cut(s) 61, 83, 112, 220
BstDEI CTNAG 2 cut(s) 154, 172
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 51, 60
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 3 cut(s) 59, 114, 185
Cac8I GCNNGC 4 cut(s) 61, 83, 112, 220
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 58
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 38, 59, 85, 114, 185, 218
CviKI_1 RGCY 6 cut(s) 38, 59, 85, 114, 185, 218
DdeI CTNAG 2 cut(s) 154, 172
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 112
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 10, 56, 72, 117
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 68
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 86, 108
Fsp4HI GCNGC 2 cut(s) 86, 108
GluI GCNGC 2 cut(s) 86, 108
GsuI CTGGAG 2 cut(s) 198, 200
HaeIII GGCC 3 cut(s) 59, 114, 185
HapII CCGG 2 cut(s) 78, 111
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 190, 272
HpaII CCGG 2 cut(s) 78, 111
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 148, 175, 233, 262
Hpy188III TCNNGA 3 cut(s) 100, 179, 194
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 88, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 60
HpyF3I CTNAG 2 cut(s) 154, 172
Hsp92II CATG 1 cut(s) 58
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 85, 91, 124, 141, 164, 228, 232
Lsp1109I GCAGC 1 cut(s) 72
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 212
MboI GATC 1 cut(s) 175
MflI RGATCY 1 cut(s) 175
MluCI AATT 3 cut(s) 4, 161, 227
MlyI GAGTC 2 cut(s) 199, 281
MnlI CCTC 3 cut(s) 25, 74, 175
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 2 cut(s) 78, 111
MwoI GCNNNNNNNGC 2 cut(s) 51, 60
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 1 cut(s) 175
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 1 cut(s) 58
NmeAIII GCCGAG 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 87, 109
PleI GAGTC 2 cut(s) 198, 280
PpsI GAGTC 2 cut(s) 198, 280
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 175
SatI GCNGC 2 cut(s) 86, 108
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 2 cut(s) 199, 281
SetI ASST 3 cut(s) 87, 99, 160
Sse9I AATT 3 cut(s) 4, 161, 227
SsiI CCGC 4 cut(s) 27, 61, 108, 210
TaaI ACNGT 1 cut(s) 202
TasI AATT 3 cut(s) 4, 161, 227
TauI GCSGC 1 cut(s) 110
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 56
XapI RAATTY 3 cut(s) 4, 161, 227
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.