Rmu_sc0004041.1_g000004

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004041.1
Physical Location & Seq
Forward (+)
17917 .. 18345
429 bp
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UTR
Exon/CDS
Intron
Rmu_sc0004041.1_g000004.1.cds

Sequence Viewer

Length: 429 bp
atgttagttgcggtgaggaagccgagtgccacgacggcgtggcccccctccgtcatatctctggcaagctgcacaagaaggtctggattgccgccggccatattctctctctgtctctctctctctctctttctctctttgatccctctgtctgaaatctcaggtaaattccaagtctcaaatcgggaggccaagagttgtgaaaccgcctacaccgctccggcttgcaataaattcagagaagcaaacccgttgagcaagttgtgcttggagaactccgacgagatggagtccctagcggtgtctgtccatcagagaattggattcaagttttgctttgggttttgcattttgctaggaaatgtcatcaacccatctaattgcattttacagatgaaaaaggaaatagaaatagagaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.59

Weight (kDa)

8.84

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 218
AciI CCGC 5 cut(s) 11, 92, 207, 216, 299
AclWI GGATC 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 167, 233
AgsI TTSAA 1 cut(s) 328
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw26I GTCTC 2 cut(s) 119, 181
AlwI GGATC 1 cut(s) 136
AoxI GGCC 3 cut(s) 41, 96, 189
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 2 cut(s) 167, 233
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 25
BbvI GCAGC 1 cut(s) 56
BccI CCATC 3 cut(s) 280, 318, 382
BceAI ACGGC 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 119, 181
BfaI CTAG 2 cut(s) 296, 356
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 2 cut(s) 70, 92
BlsI GCNGC 2 cut(s) 71, 93
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 44
Bse118I RCCGGY 1 cut(s) 94
BseMII CTCAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 3 cut(s) 43, 98, 191
BsiSI CCGG 2 cut(s) 95, 221
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 119, 181
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 3 cut(s) 43, 98, 191
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 5 cut(s) 11, 92, 207, 216, 299
BspANI GGCC 3 cut(s) 43, 98, 191
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssMI GATC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 67, 96, 226
BstDEI CTNAG 1 cut(s) 160
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 119, 181
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 35, 215, 264
BstV1I GCAGC 1 cut(s) 56
BsuRI GGCC 3 cut(s) 43, 98, 191
Cac8I GCNNGC 3 cut(s) 67, 96, 226
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 42
CviJI RGCY 6 cut(s) 22, 43, 69, 98, 191, 224
CviKI_1 RGCY 6 cut(s) 22, 43, 69, 98, 191, 224
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 96
FaiI YATR 2 cut(s) 56, 101
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 320, 352
FaqI GGGAC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 70, 92
Fsp4HI GCNGC 2 cut(s) 70, 92
FspBI CTAG 2 cut(s) 296, 356
GluI GCNGC 2 cut(s) 70, 92
HaeIII GGCC 3 cut(s) 43, 98, 191
HapII CCGG 2 cut(s) 95, 221
HinfI GANTC 2 cut(s) 290, 324
HpaII CCGG 2 cut(s) 95, 221
HphI GGTGA 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 154, 239, 280, 315
Hpy188III TCNNGA 2 cut(s) 84, 185
Hpy99I CGWCG 2 cut(s) 37, 284
HpyAV CCTTC 1 cut(s) 72
HpyCH4V TGCA 4 cut(s) 72, 228, 348, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 215, 264
HpyF3I CTNAG 1 cut(s) 160
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 47, 69, 108, 147, 234
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 2 cut(s) 296, 356
MalI GATC 1 cut(s) 143
MbiI CCGCTC 1 cut(s) 218
MboI GATC 1 cut(s) 141
MluCI AATT 4 cut(s) 167, 233, 318, 379
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 4 cut(s) 9, 58, 156, 181
MroNI GCCGGC 1 cut(s) 94
MspI CCGG 2 cut(s) 95, 221
MwoI GCNNNNNNNGC 3 cut(s) 35, 215, 264
NaeI GCCGGC 1 cut(s) 96
NdeII GATC 1 cut(s) 141
NgoMIV GCCGGC 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 44
NmeAIII GCCGAG 1 cut(s) 48
PdiI GCCGGC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 2 cut(s) 71, 93
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 44
PspPI GGNCC 1 cut(s) 42
SatI GCNGC 2 cut(s) 70, 92
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 42
SchI GAGTC 1 cut(s) 299
SetI ASST 3 cut(s) 71, 83, 166
Sse9I AATT 4 cut(s) 167, 233, 318, 379
SsiI CCGC 5 cut(s) 11, 92, 207, 216, 299
SspMI CTAG 2 cut(s) 296, 356
TasI AATT 4 cut(s) 167, 233, 318, 379
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 324
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 40
XapI RAATTY 2 cut(s) 167, 233
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 2 cut(s) 296, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.