Rmu_sc0005063.1_g000021

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005063.1
Physical Location & Seq
Forward (+)
110479 .. 110913
435 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005063.1_g000021.1.cds

Sequence Viewer

Length: 435 bp
atgaacttatgctgtgatgttagttgcggtgaggaaaccgagtgccacgacggcgtggcctgcctccgtcatatctccggcaagctgcacaagaaggtctggattgccgccggccatattctctctctctctctctctctctctctgatccctctgtctgaaatctcaggtaaattccaagtctttgatctggaggccaagagtcttgaaatcgtctacatcgctcggacctgcaataaattcagagaagcaaagccgtcaagcaagttgtgcttggagaactccgacgagatggagtcctcaacagtatctatccatcagagaattggattcaagttttgctttgggttttgcattttgctaggaaatgtcatcatcccatctgattgcattttgcagatgaaaaaggaaatagaaatggaaaagaagaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.1

Weight (kDa)

6.51

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 216
AciI CCGC 2 cut(s) 27, 108
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 173, 239
AgsI TTSAA 2 cut(s) 209, 334
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AlwI GGATC 1 cut(s) 142
AoxI GGCC 3 cut(s) 57, 112, 195
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 173, 239
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 41
AvaII GGWCC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 72
BccI CCATC 3 cut(s) 286, 324, 388
BceAI ACGGC 2 cut(s) 67, 241
BfaI CTAG 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 2 cut(s) 86, 108
BlsI GCNGC 2 cut(s) 87, 109
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 110
BseGI GGATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 72
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 3 cut(s) 59, 114, 197
BsiSI CCGG 2 cut(s) 78, 111
BsnI GGCC 3 cut(s) 59, 114, 197
Bsp143I GATC 2 cut(s) 147, 187
BspACI CCGC 2 cut(s) 27, 108
BspANI GGCC 3 cut(s) 59, 114, 197
BspCNI CTCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssMI GATC 2 cut(s) 147, 187
Bst4CI ACNGT 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 61, 83, 112
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 2 cut(s) 150, 190
BstMBI GATC 2 cut(s) 147, 187
BstMWI GCNNNNNNNGC 3 cut(s) 51, 60, 270
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 59, 114, 197
BtgZI GCGATG 1 cut(s) 205
BtsCI GGATG 1 cut(s) 375
BveI ACCTGC 1 cut(s) 239
Cac8I GCNNGC 3 cut(s) 61, 83, 112
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 228
CviJI RGCY 5 cut(s) 59, 85, 114, 197, 256
CviKI_1 RGCY 5 cut(s) 59, 85, 114, 197, 256
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 149, 189
DpnII GATC 2 cut(s) 147, 187
EaeI YGGCCR 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 228
FaiI YATR 3 cut(s) 10, 72, 117
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 326, 358
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 2 cut(s) 86, 108
FokI GGATG 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 86, 108
FspBI CTAG 1 cut(s) 362
GluI GCNGC 2 cut(s) 86, 108
GsuI CTGGAG 1 cut(s) 212
HaeIII GGCC 3 cut(s) 59, 114, 197
HapII CCGG 2 cut(s) 78, 111
HinfI GANTC 3 cut(s) 202, 296, 330
HpaII CCGG 2 cut(s) 78, 111
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 7 cut(s) 147, 160, 228, 245, 286, 321, 385
Hpy188III TCNNGA 3 cut(s) 100, 191, 206
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 53, 290
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4V TGCA 5 cut(s) 88, 234, 354, 390, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 60, 270
HpyF3I CTNAG 1 cut(s) 166
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Kzo9I GATC 2 cut(s) 147, 187
LpnPI CCDG 7 cut(s) 73, 85, 91, 124, 153, 176, 244
Lsp1109I GCAGC 1 cut(s) 72
MaeI CTAG 1 cut(s) 362
MalI GATC 2 cut(s) 149, 189
MboI GATC 2 cut(s) 147, 187
MluCI AATT 3 cut(s) 173, 239, 324
MlyI GAGTC 2 cut(s) 211, 305
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 25, 74, 162, 187, 310
MroNI GCCGGC 1 cut(s) 110
MspI CCGG 2 cut(s) 78, 111
MwoI GCNNNNNNNGC 3 cut(s) 51, 60, 270
NaeI GCCGGC 1 cut(s) 112
NdeII GATC 2 cut(s) 147, 187
NgoMIV GCCGGC 1 cut(s) 110
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 87, 109
PleI GAGTC 2 cut(s) 210, 304
PpsI GAGTC 2 cut(s) 210, 304
PspPI GGNCC 1 cut(s) 228
SatI GCNGC 2 cut(s) 86, 108
Sau3AI GATC 2 cut(s) 147, 187
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 2 cut(s) 211, 305
SetI ASST 4 cut(s) 87, 99, 172, 233
SinI GGWCC 1 cut(s) 228
Sse9I AATT 3 cut(s) 173, 239, 324
SsiI CCGC 2 cut(s) 27, 108
SspMI CTAG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 307
TasI AATT 3 cut(s) 173, 239, 324
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 330
TseI GCWGC 1 cut(s) 85
TspDTI ATGAA 2 cut(s) 17, 416
TspGWI ACGGA 1 cut(s) 56
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 2 cut(s) 173, 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.