Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

42364534 .. 42366632

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19806

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGTCAATATCTCCTTGGCTGCAGCTAATTCTCGCCGTACCAGGGAAGACAGGGACCAATTTGAGGAAGCTAATACCAAGATTGTGACTCACTTGGAAACAAAGGAAGATGAACTATCAAAATCCATTGCTTCATGTAAGGTCGAGGCAGATGTTCTACATACATGGATTAATTTTTTGGAAGATACTTGGGTACTCAAGTGCTCATATGCAGAGACCAAGGAGAAGCAGGTCAATGATGAATTGGAGAAACATGAGCACTATTTTGTGAACTTCGCCATTGATCTTCTCTCTGCCTACAAGAAAGAGTTGGGGCCTTCTATCAGCCGTATAGGGAAATTTGTGGAGAATCTTAAGAATTTGAGCAAGAAGTCAGGGGTGGTATCTAATGCAGAGAATGAGGATTCTAAAGCATTAAATCCATTAAGAAGCCTTGAGGAGGAATATTTGGATCATGAAACCAAGGAAAGACCCAAGGGTACGGTTAAGGAACTGTTTGATGATATTGAAAAATTAAGAGCACAATTTGAAGCTGTTGAGAGACCAATTCTAGAAATAGAGACTCCAACTCCCCAAGCTGAAACTCCGTCTGATTACACGCTGCAGAGTGCTCCATCTGATCTCTCAGCAGATGGCTCAGTTGCACAGAAAGATGAGACAGTGAAGCATTCGGAGAAGGGTGCAGTCAAGGTAGAGCAAGTGCTCGACCCTGAAGATGACCTAGCAAAGCTCGAATCAGAGTTTGGCAAGGTTGGTCAAGACTACTCAACAGAGGAGGTGGGTGAGTGGGAATTTGACGAGCTTGAGAGGGAACTAATATCTGGTGATTCATCAACTCAAATAGACCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

32.06

Weight (kDa)

4.57

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AclWI	GGATC	1 cut(s)	459
AcsI	RAATTY	3 cut(s)	338, 358, 791
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	3 cut(s)	40, 195, 481
AfiI	CCNNNNNNNGG	3 cut(s)	43, 64, 439
AflII	CTTAAG	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	509, 530
AjnI	CCWGG	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	6 cut(s)	26, 71, 533, 578, 730, 802
AluI	AGCT	6 cut(s)	26, 71, 533, 578, 730, 802
Alw21I	GWGCWC	5 cut(s)	206, 261, 523, 613, 705
Alw26I	GTCTC	4 cut(s)	209, 535, 554, 650
AlwI	GGATC	1 cut(s)	459
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	3 cut(s)	20, 23, 601
ApoI	RAATTY	3 cut(s)	338, 358, 791
AseI	ATTAAT	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	55, 314
AsuHPI	GGTGA	2 cut(s)	794, 836
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	4 cut(s)	177, 185, 210, 218
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	5 cut(s)	206, 261, 523, 613, 705
BbvI	GCAGC	3 cut(s)	7, 35, 588
BccI	CCATC	2 cut(s)	622, 626
BceAI	ACGGC	2 cut(s)	21, 312
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	4 cut(s)	209, 535, 554, 650
BfaI	CTAG	2 cut(s)	551, 722
BfmI	CTRYAG	2 cut(s)	21, 602
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	3 cut(s)	21, 24, 602
BlsI	GCNGC	3 cut(s)	22, 25, 603
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 314
BmiI	GGNNCC	2 cut(s)	56, 315
BmrFI	CCNGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	54
BpuEI	CTTGAG	3 cut(s)	182, 455, 824
BsaI	GGTCTC	2 cut(s)	209, 535
BsaJI	CCNNGG	5 cut(s)	15, 42, 219, 462, 474
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 64, 439
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	5 cut(s)	15, 42, 219, 462, 474
BseLI	CCNNNNNNNGG	3 cut(s)	43, 64, 439
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	639, 651
BseRI	GAGGAG	2 cut(s)	452, 788
BseXI	GCAGC	3 cut(s)	7, 35, 588
BsgI	GTGCAG	1 cut(s)	702
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	5 cut(s)	206, 261, 523, 613, 705
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	43, 64, 439
BsmAI	GTCTC	4 cut(s)	209, 535, 554, 650
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	316
Bso31I	GGTCTC	2 cut(s)	209, 535
Bsp1286I	GDGCHC	5 cut(s)	206, 261, 523, 613, 705
Bsp143I	GATC	3 cut(s)	283, 451, 619
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	2 cut(s)	638, 650
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	56, 315
BspMAI	CTGCAG	2 cut(s)	25, 606
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	459
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	2 cut(s)	209, 535
BsrDI	GCAATG	1 cut(s)	126
BssECI	CCNNGG	5 cut(s)	15, 42, 219, 462, 474
BssMI	GATC	3 cut(s)	283, 451, 619
BssT1I	CCWWGG	4 cut(s)	15, 219, 462, 474
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	3 cut(s)	484, 495, 661
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	625, 637
BstENI	CCTNNNNNAGG	1 cut(s)	437
BstKTI	GATC	3 cut(s)	286, 454, 622
BstMAI	GTCTC	4 cut(s)	209, 535, 554, 650
BstMBI	GATC	3 cut(s)	283, 451, 619
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	21, 602
BstV1I	GCAGC	3 cut(s)	7, 35, 588
BstV2I	GAAGAC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	666
BveI	ACCTGC	1 cut(s)	220
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	55, 314
Csp6I	GTAC	3 cut(s)	39, 194, 480
CviAII	CATG	4 cut(s)	135, 165, 254, 455
CviQI	GTAC	3 cut(s)	39, 194, 480
DdeI	CTNAG	2 cut(s)	625, 637
DpnI	GATC	3 cut(s)	285, 453, 621
DpnII	GATC	3 cut(s)	283, 451, 619
Eco130I	CCWWGG	4 cut(s)	15, 219, 462, 474
Eco31I	GGTCTC	2 cut(s)	209, 535
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	732
EcoNI	CCTNNNNNAGG	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	4 cut(s)	15, 219, 462, 474
ErhI	CCWWGG	4 cut(s)	15, 219, 462, 474
FaeI	CATG	4 cut(s)	138, 168, 257, 458
FaiI	YATR	9 cut(s)	136, 162, 166, 208, 210, 255, 332, 456, 850
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	134, 164, 253, 454
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	21, 24, 602
Fsp4HI	GCNGC	3 cut(s)	21, 24, 602
FspBI	CTAG	2 cut(s)	551, 722
GluI	GCNGC	3 cut(s)	21, 24, 602
HaeIII	GGCC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	138, 168, 257, 458
HinfI	GANTC	6 cut(s)	88, 349, 404, 562, 734, 827
HphI	GGTGA	2 cut(s)	794, 836
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	592, 619, 673, 739
Hpy188III	TCNNGA	3 cut(s)	455, 551, 758
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	327, 670
HpyCH4III	ACNGT	3 cut(s)	484, 495, 661
HpyCH4V	TGCA	6 cut(s)	23, 212, 392, 604, 644, 683
HpyF3I	CTNAG	2 cut(s)	625, 637
Hsp92II	CATG	4 cut(s)	138, 168, 257, 458
Kzo9I	GATC	3 cut(s)	283, 451, 619
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	7 cut(s)	28, 37, 55, 215, 360, 723, 807
Lsp1109I	GCAGC	3 cut(s)	7, 35, 588
MaeI	CTAG	2 cut(s)	551, 722
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	3 cut(s)	285, 453, 621
MboI	GATC	3 cut(s)	283, 451, 619
MboII	GAAGA	5 cut(s)	59, 119, 194, 278, 725
MhlI	GDGCHC	5 cut(s)	206, 261, 523, 613, 705
MlyI	GAGTC	2 cut(s)	82, 556
MmeI	TCCRAC	1 cut(s)	590
MnlI	CCTC	8 cut(s)	58, 139, 394, 430, 433, 766, 769, 801
MseI	TTAA	6 cut(s)	171, 354, 416, 425, 486, 515
MspCI	CTTAAG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	667
MvaI	CCWGG	1 cut(s)	43
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	283, 451, 619
NlaIII	CATG	4 cut(s)	138, 168, 257, 458
NlaIV	GGNNCC	2 cut(s)	56, 315
NmuCI	GTSAC	1 cut(s)	85
PagI	TCATGA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	667
PfeI	GAWTC	4 cut(s)	349, 404, 734, 827
PkrI	GCNGC	3 cut(s)	22, 25, 603
PleI	GAGTC	2 cut(s)	82, 556
PpsI	GAGTC	2 cut(s)	82, 556
PshBI	ATTAAT	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	56, 315
PspPI	GGNCC	2 cut(s)	55, 314
PstI	CTGCAG	2 cut(s)	25, 606
RsaI	GTAC	3 cut(s)	40, 195, 481
RsaNI	GTAC	3 cut(s)	39, 194, 480
SaqAI	TTAA	6 cut(s)	171, 354, 416, 425, 486, 515
SatI	GCNGC	3 cut(s)	21, 24, 602
Sau3AI	GATC	3 cut(s)	283, 451, 619
Sau96I	GGNCC	2 cut(s)	55, 314
SchI	GAGTC	2 cut(s)	82, 556
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	5 cut(s)	206, 261, 523, 613, 705
SfcI	CTRYAG	2 cut(s)	21, 602
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	4 cut(s)	197, 353, 434, 803
SmoI	CTYRAG	4 cut(s)	197, 353, 434, 803
SspI	AATATT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	551, 722
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	4 cut(s)	15, 219, 462, 474
TaaI	ACNGT	3 cut(s)	484, 495, 661
TaqI	TCGA	3 cut(s)	144, 705, 732
TfiI	GAWTC	4 cut(s)	349, 404, 734, 827
Tru1I	TTAA	6 cut(s)	171, 354, 416, 425, 486, 515
Tru9I	TTAA	6 cut(s)	171, 354, 416, 425, 486, 515
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	3 cut(s)	20, 23, 601
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	5 cut(s)	123, 126, 255, 471, 819
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	1 cut(s)	666
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	437
XapI	RAATTY	3 cut(s)	338, 358, 791
XbaI	TCTAGA	1 cut(s)	550
XspI	CTAG	2 cut(s)	551, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.