Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

20845008 .. 20845330

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTGTGGCTGAGATCAGCAGTGAACAAAGCCGTGGAGGTTGGGAACAACATCAACCTCACCTGCACCGTCAAGAACTATGACGATTTCGTCATCCAGCAGGCAGGCCATACCGTGGCCAAAGGCGCCAAGCGGGGAATCGGAGTTTCCGGAGCTTTAAGAAGAGTGTACAGAGATTGGAGGAAGCAGCTGTATCATGTAGAGGACCTGAAAGGGTTGAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.56

Weight (kDa)

10.0

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	71
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	115
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	1 cut(s)	133
AcoI	YGGCCR	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	2 cut(s)	170, 224
AfiI	CCNNNNNNNGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	155, 190
AluI	AGCT	2 cut(s)	155, 190
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	2 cut(s)	106, 117
ApeKI	GCWGC	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	199
BceAI	ACGGC	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	33, 114
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	33, 114
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	1 cut(s)	49
BshFI	GGCC	2 cut(s)	108, 119
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	2 cut(s)	108, 119
Bsp13I	TCCGGA	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	14
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	2 cut(s)	108, 119
BspEI	TCCGGA	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	33, 114
BssMI	GATC	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	70, 115
Bst6I	CTCTTC	1 cut(s)	157
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	102, 106
BstDEI	CTNAG	1 cut(s)	11
BstDSI	CCRYGG	2 cut(s)	33, 114
BstF5I	GGATG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	108, 119
BtgI	CCRYGG	2 cut(s)	33, 114
BtsCI	GGATG	1 cut(s)	93
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	102, 106
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	169, 223
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	10, 32, 108, 119, 155, 190
CviKI_1	RGCY	6 cut(s)	10, 32, 108, 119, 155, 190
CviQI	GTAC	2 cut(s)	169, 223
DdeI	CTNAG	1 cut(s)	11
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	1 cut(s)	200
FaiI	YATR	3 cut(s)	81, 111, 198
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	188
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	108, 119
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	200
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	25, 169
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	73, 150
Hpy8I	GTNNAC	2 cut(s)	25, 169
HpyCH4III	ACNGT	2 cut(s)	70, 115
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	200
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	6 cut(s)	76, 86, 90, 110, 163, 221
Lsp1109I	GCAGC	1 cut(s)	199
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	119
MluNI	TGGCCA	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	31, 68, 174, 196, 213
Mox20I	TGGCCA	1 cut(s)	119
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	190
MspI	CCGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	125
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	1 cut(s)	200
NlaIV	GGNNCC	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	189
PluTI	GGCGCC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	205
PspPPI	RGGWCCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	190
RsaI	GTAC	2 cut(s)	170, 224
RsaNI	GTAC	2 cut(s)	169, 223
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	205
SetI	ASST	7 cut(s)	42, 60, 65, 157, 192, 210, 224
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	205
SsiI	CCGC	1 cut(s)	133
SspDI	GGCGCC	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	70, 115
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	187
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.