Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Forward (+)

56153282 .. 56162317

Gene Structure 9036 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG328700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGACTCAGATTCTTGAAGCACCAAATGATGAAGAGGTTGCCTTACTCTCAGAGATGTTTAGGCTCTGTCTTACCGGAGGGAAAGAAGTTCACAATGCAATTGTGAGCAGCATACAGGACTTGGCAACGGCTTTTTCGAGCTACAACGATGAAGTATTGGTAAAGCGAGAGGAATTGCTTCAATTTGCACAAAGTGCAATTACAGGATTGAAGATAAATGCTGATCTTGGAAGAATAGATGATGAGGCCTCTAGGTTAAAGAAGAAGCTTGATGGAAGGACACCACTGCTGACATCTCCTTCAACTGAAGGTCATGACAAAGTATCGGAAGAAACAAAATTGGAAACAGTACAGGCATTAAAAAAAGCACTTGCACAAATTCGAGCTTGTTCCAGATTAGAAGGGCTTTTACTGAAGAAGAAACTCTTGAACAGTGGAGATTCTTCAGAGATCCATGCTCAAAAAGTTGACAAATTGAAGGTTTTATCAGAATCTCTTGCTAGCTCCTCTGCAAAAGCGGAAAATCGTATTTCAGATAACAGAATCCAAAAGGAGGAAGCTCTAAAAGTTCGTGCGTCTAAAGCTAGTGAAGTGGGTGAAAGAGAGAAGGAAATAGAAGCTGAGGTTGCAGAGCTTGAAAGACAAAGGGATGACCTTGAGGCTCAATTGAAAAAGGTCAATATCTCCTTGGCTGCAGCTAATTCTCGCCTTCGCAATACCAGGGAAGAGAGGGACCAATTTGAGGAAGCTAATACCAAGATTGTGGCTCACTTGGAAACAAAGGAAGATGAACTATCAAAATCCATTGCTTCATGCAAGGTCGAGGCAGATGTTCTACGTACATGGATTAATTTTTTGGAAGATACTTGGGTACTCAAGTGCTCATATGCAGAGACCAAGGAGAAGCAGGTCAATGATGAATTGGAGAAACAAGAGCACTATTTTGTGAACTTCGCCATTGATCTTCTCTCTGCCTACAAGAAAGAGTTGGGGCCTTCTATCAGCCGTATAGGGAAATTTGTGGAGAATCTTAAGAATTTGAGCAAGAAGTCAGGGGTGGTATCTAATGCAGAGAATGAGGATTCTAAAGCATTAAATCCATTAAGAAGTCTTGAGGAGGAATATTTGGATCATGAAACCAAGATTATTACCACCTTCAGTGTAGTTGATAATATGAAAGCGCACTTTTATTCAGAACAGGCTAGAACTTCCAGGAAAGAAGACCCAAGGGTTAAGGAGCTGTTCAATGATATTGAAAAACTAAGAGCACAATTTGAAGCTGTTGAGAGACCAATTCTAGAAATAGAGACTCCAATTCCCCAAGCTGGAACTCCGTCTGATGACAAGCTGCAGAGTGCTCCATCTGATCTCTCAGCAGAGGGCTCAGTTGCACAGAAAGCTGAGACAGTGAAGCATTCGGAGTCAGGTGCAGTCAAGGTAGAGCAAGTGCTCGACCCTGAAGATGACCTAGCAAAGCTCGAATCAGAGTTTGGCAAGGTTGGTCAAGACTACTCAACAGAGGAGGTGGGTGAGTGGGAATTTGACGAGCTTGAGAGGGAACTAAGATCTGGTGATTCATCAACTACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

530

Amino Acids

59.4

Weight (kDa)

4.96

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	898
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	445, 1137
AcsI	RAATTY	4 cut(s)	378, 1016, 1036, 1538
AcuI	CTGAAG	5 cut(s)	327, 429, 434, 1141, 1479
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	351, 841, 873
AfiI	CCNNNNNNNGG	3 cut(s)	553, 742, 1325
AflII	CTTAAG	1 cut(s)	1031
AjnI	CCWGG	2 cut(s)	719, 1211
AjuI	GAANNNNNNNTTGG	2 cut(s)	1473, 1505
Alw21I	GWGCWC	5 cut(s)	884, 939, 1270, 1360, 1452
Alw26I	GTCTC	4 cut(s)	887, 1282, 1301, 1397
AlwI	GGATC	2 cut(s)	445, 1137
AoxI	GGCC	2 cut(s)	246, 992
ApeKI	GCWGC	4 cut(s)	108, 692, 695, 1348
ApoI	RAATTY	4 cut(s)	378, 1016, 1036, 1538
AseI	ATTAAT	1 cut(s)	849
Asp700I	GAANNNNTTC	1 cut(s)	177
AspLEI	GCGC	1 cut(s)	1183
AspS9I	GGNCC	2 cut(s)	733, 992
AsuHPI	GGTGA	3 cut(s)	608, 1541, 1583
AsuNHI	GCTAGC	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	733
BaeI	ACNNNNGTAYC	4 cut(s)	855, 863, 888, 896
BanII	GRGCYC	1 cut(s)	1385
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbsI	GAAGAC	1 cut(s)	1227
Bbv12I	GWGCWC	5 cut(s)	884, 939, 1270, 1360, 1452
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	120, 679, 707, 1335
BccI	CCATC	2 cut(s)	266, 1369
BceAI	ACGGC	2 cut(s)	144, 990
BciT130I	CCWGG	2 cut(s)	721, 1213
BcoDI	GTCTC	4 cut(s)	887, 1282, 1301, 1397
BfaI	CTAG	6 cut(s)	252, 501, 585, 1203, 1298, 1469
BfmI	CTRYAG	2 cut(s)	693, 1349
BfrI	CTTAAG	1 cut(s)	1031
BfuAI	ACCTGC	1 cut(s)	898
BglII	AGATCT	1 cut(s)	1565
BisI	GCNGC	4 cut(s)	109, 693, 696, 1349
BlsI	GCNGC	4 cut(s)	110, 694, 697, 1350
Bme1390I	CCNGG	2 cut(s)	721, 1213
Bme18I	GGWCC	1 cut(s)	733
BmgT120I	GGNCC	2 cut(s)	733, 992
BmiI	GGNNCC	2 cut(s)	734, 993
BmrFI	CCNGG	2 cut(s)	721, 1213
BmtI	GCTAGC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	1227
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	4 cut(s)	677, 860, 1133, 1571
BsaAI	YACGTR	1 cut(s)	839
BsaI	GGTCTC	2 cut(s)	887, 1282
BsaJI	CCNNGG	4 cut(s)	687, 720, 897, 1226
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	3 cut(s)	553, 742, 1325
Bse3DI	GCAATG	1 cut(s)	804
BseBI	CCWGG	2 cut(s)	721, 1213
BseDI	CCNNGG	4 cut(s)	687, 720, 897, 1226
BseGI	GGATG	1 cut(s)	655
BseLI	CCNNNNNNNGG	3 cut(s)	553, 742, 1325
BseMI	GCAATG	1 cut(s)	804
BseMII	CTCAG	6 cut(s)	20, 63, 612, 1386, 1392, 1398
BseRI	GAGGAG	3 cut(s)	496, 1130, 1535
BseXI	GCAGC	4 cut(s)	120, 679, 707, 1335
BsgI	GTGCAG	1 cut(s)	1449
BshFI	GGCC	2 cut(s)	248, 994
BsiHKAI	GWGCWC	5 cut(s)	884, 939, 1270, 1360, 1452
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	3 cut(s)	553, 742, 1325
BsmAI	GTCTC	4 cut(s)	887, 1282, 1301, 1397
BsmFI	GGGAC	1 cut(s)	746
BsmI	GAATGC	1 cut(s)	1414
BsnI	GGCC	2 cut(s)	248, 994
Bso31I	GGTCTC	2 cut(s)	887, 1282
Bsp1286I	GDGCHC	6 cut(s)	884, 939, 1270, 1360, 1385, 1452
Bsp143I	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	248, 994
BspCNI	CTCAG	6 cut(s)	19, 62, 613, 1385, 1393, 1397
BspHI	TCATGA	2 cut(s)	313, 1132
BspLI	GGNNCC	2 cut(s)	734, 993
BspMAI	CTGCAG	2 cut(s)	697, 1353
BspMI	ACCTGC	1 cut(s)	898
BspOI	GCTAGC	1 cut(s)	504
BspPI	GGATC	2 cut(s)	445, 1137
BspTI	CTTAAG	1 cut(s)	1031
BspTNI	GGTCTC	2 cut(s)	887, 1282
BsrDI	GCAATG	1 cut(s)	804
BssECI	CCNNGG	4 cut(s)	687, 720, 897, 1226
BssMI	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
BssT1I	CCWWGG	3 cut(s)	687, 897, 1226
Bst2UI	CCWGG	2 cut(s)	721, 1213
Bst4CI	ACNGT	3 cut(s)	349, 434, 1408
Bst6I	CTCTTC	2 cut(s)	27, 720
BstAFI	CTTAAG	1 cut(s)	1031
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	8 cut(s)	6, 49, 621, 1262, 1372, 1384, 1401, 1562
BstF5I	GGATG	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	1183
BstKTI	GATC	6 cut(s)	226, 453, 964, 1132, 1369, 1568
BstMAI	GTCTC	4 cut(s)	887, 1282, 1301, 1397
BstMBI	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 581, 626, 1397
BstNI	CCWGG	2 cut(s)	721, 1213
BstSCI	CCNGG	2 cut(s)	719, 1211
BstSFI	CTRYAG	2 cut(s)	693, 1349
BstSNI	TACGTA	1 cut(s)	839
BstV1I	GCAGC	4 cut(s)	120, 679, 707, 1335
BstV2I	GAAGAC	1 cut(s)	1227
BstX2I	RGATCY	2 cut(s)	450, 1565
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	2 cut(s)	450, 1565
BsuRI	GGCC	2 cut(s)	248, 994
BtsCI	GGATG	1 cut(s)	655
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	4 cut(s)	284, 439, 1165, 1413
BveI	ACCTGC	1 cut(s)	898
Cac8I	GCNNGC	1 cut(s)	502
CciI	TCATGA	2 cut(s)	313, 1132
CfoI	GCGC	1 cut(s)	1183
Cfr13I	GGNCC	2 cut(s)	733, 992
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	350, 840, 872
CviAII	CATG	5 cut(s)	314, 455, 813, 843, 1133
CviQI	GTAC	3 cut(s)	350, 840, 872
DdeI	CTNAG	8 cut(s)	6, 49, 621, 1262, 1372, 1384, 1401, 1562
DpnI	GATC	6 cut(s)	225, 452, 963, 1131, 1368, 1567
DpnII	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
DraIII	CACNNNGTG	1 cut(s)	194
Eam1104I	CTCTTC	2 cut(s)	27, 720
EarI	CTCTTC	2 cut(s)	27, 720
Eco105I	TACGTA	1 cut(s)	839
Eco130I	CCWWGG	3 cut(s)	687, 897, 1226
Eco147I	AGGCCT	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	1385
Eco31I	GGTCTC	2 cut(s)	887, 1282
Eco47I	GGWCC	1 cut(s)	733
Eco57I	CTGAAG	5 cut(s)	327, 429, 434, 1141, 1479
EcoO109I	RGGNCCY	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	719, 1211
EcoT14I	CCWWGG	3 cut(s)	687, 897, 1226
EcoT38I	GRGCYC	1 cut(s)	1385
ErhI	CCWWGG	3 cut(s)	687, 897, 1226
FaeI	CATG	5 cut(s)	317, 458, 816, 846, 1136
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	5 cut(s)	313, 454, 812, 842, 1132
FauNDI	CATATG	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	109, 693, 696, 1349
FokI	GGATG	1 cut(s)	662
FriOI	GRGCYC	1 cut(s)	1385
Fsp4HI	GCNGC	4 cut(s)	109, 693, 696, 1349
FspBI	CTAG	6 cut(s)	252, 501, 585, 1203, 1298, 1469
GlaI	GCGC	1 cut(s)	1182
GluI	GCNGC	4 cut(s)	109, 693, 696, 1349
HaeIII	GGCC	2 cut(s)	248, 994
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	564
HhaI	GCGC	1 cut(s)	1183
Hin1II	CATG	5 cut(s)	317, 458, 816, 846, 1136
Hin6I	GCGC	1 cut(s)	1181
HinP1I	GCGC	1 cut(s)	1181
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HindIII	AAGCTT	1 cut(s)	266
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	3 cut(s)	608, 1541, 1583
Hpy166II	GTNNAC	3 cut(s)	91, 469, 949
Hpy188III	TCNNGA	8 cut(s)	14, 314, 393, 427, 1112, 1133, 1298, 1505
Hpy8I	GTNNAC	3 cut(s)	91, 469, 949
HpyAV	CCTTC	9 cut(s)	270, 302, 309, 395, 472, 601, 719, 1005, 1165
HpyCH4III	ACNGT	3 cut(s)	349, 434, 1408
HpyCH4IV	ACGT	1 cut(s)	838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 581, 626, 1397
HpyF3I	CTNAG	8 cut(s)	6, 49, 621, 1262, 1372, 1384, 1401, 1562
HpySE526I	ACGT	1 cut(s)	838
Hsp92II	CATG	5 cut(s)	317, 458, 816, 846, 1136
HspAI	GCGC	1 cut(s)	1181
Kzo9I	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
LmnI	GCTCC	3 cut(s)	509, 1237, 1363
Lsp1109I	GCAGC	4 cut(s)	120, 679, 707, 1335
MaeI	CTAG	6 cut(s)	252, 501, 585, 1203, 1298, 1469
MaeII	ACGT	1 cut(s)	838
MalI	GATC	6 cut(s)	225, 452, 963, 1131, 1368, 1567
MboI	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
MfeI	CAATTG	2 cut(s)	99, 665
MflI	RGATCY	2 cut(s)	450, 1565
MhlI	GDGCHC	6 cut(s)	884, 939, 1270, 1360, 1385, 1452
MlyI	GAGTC	2 cut(s)	1303, 1430
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	7 cut(s)	257, 359, 849, 1032, 1094, 1103, 1233
MspCI	CTTAAG	1 cut(s)	1031
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	721, 1213
MunI	CAATTG	2 cut(s)	99, 665
Mva1269I	GAATGC	1 cut(s)	1414
MvaI	CCWGG	2 cut(s)	721, 1213
MwoI	GCNNNNNNNGC	4 cut(s)	194, 581, 626, 1397
NdeI	CATATG	1 cut(s)	886
NdeII	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
NheI	GCTAGC	1 cut(s)	500
NlaIII	CATG	5 cut(s)	317, 458, 816, 846, 1136
NlaIV	GGNNCC	2 cut(s)	734, 993
PagI	TCATGA	2 cut(s)	313, 1132
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	1414
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	8 cut(s)	10, 440, 491, 543, 1027, 1082, 1481, 1574
PfoI	TCCNGGA	1 cut(s)	1211
PkrI	GCNGC	4 cut(s)	110, 694, 697, 1350
PleI	GAGTC	2 cut(s)	1303, 1429
PpsI	GAGTC	2 cut(s)	1303, 1429
Ppu21I	YACGTR	1 cut(s)	839
PshBI	ATTAAT	1 cut(s)	849
Psp6I	CCWGG	2 cut(s)	719, 1211
PspGI	CCWGG	2 cut(s)	719, 1211
PspN4I	GGNNCC	2 cut(s)	734, 993
PspPI	GGNCC	2 cut(s)	733, 992
PstI	CTGCAG	2 cut(s)	697, 1353
PsuI	RGATCY	2 cut(s)	450, 1565
RsaI	GTAC	3 cut(s)	351, 841, 873
RsaNI	GTAC	3 cut(s)	350, 840, 872
SaqAI	TTAA	7 cut(s)	257, 359, 849, 1032, 1094, 1103, 1233
SatI	GCNGC	4 cut(s)	109, 693, 696, 1349
Sau3AI	GATC	6 cut(s)	223, 450, 961, 1129, 1366, 1565
Sau96I	GGNCC	2 cut(s)	733, 992
SchI	GAGTC	2 cut(s)	1303, 1430
ScrFI	CCNGG	2 cut(s)	721, 1213
SduI	GDGCHC	6 cut(s)	884, 939, 1270, 1360, 1385, 1452
SfcI	CTRYAG	2 cut(s)	693, 1349
SinI	GGWCC	1 cut(s)	733
SmlI	CTYRAG	5 cut(s)	656, 875, 1031, 1112, 1550
SmoI	CTYRAG	5 cut(s)	656, 875, 1031, 1112, 1550
SnaBI	TACGTA	1 cut(s)	839
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	1 cut(s)	1124
SspMI	CTAG	6 cut(s)	252, 501, 585, 1203, 1298, 1469
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	719, 1211
StyI	CCWWGG	3 cut(s)	687, 897, 1226
TaaI	ACNGT	3 cut(s)	349, 434, 1408
TaiI	ACGT	1 cut(s)	841
TaqI	TCGA	5 cut(s)	137, 382, 822, 1452, 1479
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	8 cut(s)	10, 440, 491, 543, 1027, 1082, 1481, 1574
Tru1I	TTAA	7 cut(s)	257, 359, 849, 1032, 1094, 1103, 1233
Tru9I	TTAA	7 cut(s)	257, 359, 849, 1032, 1094, 1103, 1233
TscAI	CASTG	4 cut(s)	291, 439, 1165, 1413
TseI	GCWGC	4 cut(s)	108, 692, 695, 1348
TspDTI	ATGAA	8 cut(s)	45, 165, 801, 804, 933, 1149, 1190, 1566
TspGWI	ACGGA	1 cut(s)	1323
TspRI	CASTG	4 cut(s)	291, 439, 1165, 1413
Vha464I	CTTAAG	1 cut(s)	1031
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	849
XapI	RAATTY	4 cut(s)	378, 1016, 1036, 1538
XbaI	TCTAGA	1 cut(s)	1297
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	6 cut(s)	252, 501, 585, 1203, 1298, 1469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.