Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467635.1

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1882

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 701 bp

atgtcgtggctgagatcagcggtgaacaaagccgtggaggttgggaacagcaacaacctcacccgcaccgtcaggaactacgccgattccgtcgtccagcaggccggccacgccgtcgctgaaggcgccaagcggtttcaggatcgactggggaatcggagcttccggagcgttaagaagagtgtacagagattggaggaagcagctgtgtcgtgtagaggacctgaaagggctgagatactgaggaggtgggtgattctgctcaaagaggtggagagactgaagctgtctcaggcagaagagaaggaaaaggcggcggagcagagtagcggcggtggtgcttcggaggatgttagtgatattcggaggaagatatcgacggttttgtattatgactctgatgctggtggtgagcccatgaatttccgcgacgtttttcttctgagtcaggctctggagggcattacattgtctatgattcttgaagcaccaaatgatgaagaggttgccttactctcagagatgtttaggctctgtcttaccggagggaaagaagttcacaatgcaattgtgagcagcatacaggacttggcaacggctttttcgagctacaacgatgaagtattggtaaagcgagaggaattgcttcaatttgcacaaagtgcaattacaggattgaagataaatgctgatcttggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.71

Weight (kDa)

5.46

Isoelectric Point (pI)

57.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	125
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	165
AciI	CCGC	8 cut(s)	20, 64, 133, 314, 317, 330, 333, 427
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	141, 302
AcyI	GRCGYC	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	485, 650, 679
AluBI	AGCT	4 cut(s)	162, 206, 286, 609
AluI	AGCT	4 cut(s)	162, 206, 286, 609
Alw26I	GTCTC	2 cut(s)	271, 294
AlwI	GGATC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	454
Aor13HI	TCCGGA	1 cut(s)	165
AoxI	GGCC	2 cut(s)	102, 106
ApeKI	GCWGC	2 cut(s)	203, 576
ApoI	RAATTY	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	34, 52, 265, 422
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	215, 588
BceAI	ACGGC	3 cut(s)	17, 98, 612
BcgI	CGANNNNNNTGC	2 cut(s)	192, 226
BcoDI	GTCTC	2 cut(s)	271, 294
BfoI	RGCGCY	1 cut(s)	129
BisI	GCNGC	4 cut(s)	204, 315, 331, 577
BlsI	GCNGC	4 cut(s)	205, 316, 332, 578
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	127
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	2 cut(s)	165, 542
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	355
BseMII	CTCAG	5 cut(s)	225, 233, 305, 434, 531
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	215, 588
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	2 cut(s)	104, 108
BshNI	GGYRCC	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	105, 166, 543
BsmAI	GTCTC	2 cut(s)	271, 294
BsnI	GGCC	2 cut(s)	104, 108
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp13I	TCCGGA	1 cut(s)	165
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	14, 142, 691
BspACI	CCGC	8 cut(s)	20, 64, 133, 314, 317, 330, 333, 427
BspANI	GGCC	2 cut(s)	104, 108
BspCNI	CTCAG	5 cut(s)	226, 234, 304, 435, 530
BspEI	TCCGGA	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	153
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	14, 142, 691
BssNI	GRCGYC	1 cut(s)	126
Bst4CI	ACNGT	2 cut(s)	70, 382
Bst6I	CTCTTC	3 cut(s)	173, 294, 495
BstACI	GRCGYC	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	102, 106
BstDEI	CTNAG	6 cut(s)	11, 234, 242, 291, 443, 517
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	17, 145, 694
BstMAI	GTCTC	2 cut(s)	271, 294
BstMBI	GATC	3 cut(s)	14, 142, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 125, 168, 662
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	215, 588
BsuRI	GGCC	2 cut(s)	104, 108
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	102, 106
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	6 cut(s)	11, 234, 242, 291, 443, 517
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	16, 144, 693
DpnII	GATC	3 cut(s)	14, 142, 691
DraIII	CACNNNGTG	1 cut(s)	662
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	173, 294, 495
EarI	CTCTTC	3 cut(s)	173, 294, 495
EciI	GGCGGA	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	141, 302
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRV	GATATC	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	417
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
FaeI	CATG	1 cut(s)	421
FaiI	YATR	4 cut(s)	393, 419, 476, 581
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	71
Fnu4HI	GCNGC	4 cut(s)	204, 315, 331, 577
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	1 cut(s)	417
FseI	GGCCGGCC	1 cut(s)	108
Fsp4HI	GCNGC	4 cut(s)	204, 315, 331, 577
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	204, 315, 331, 577
GsuI	CTGGAG	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	104, 108
HapII	CCGG	3 cut(s)	105, 166, 543
HhaI	GCGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	6 cut(s)	86, 154, 256, 395, 445, 478
HpaII	CCGG	3 cut(s)	105, 166, 543
HphI	GGTGA	4 cut(s)	34, 52, 265, 422
Hpy166II	GTNNAC	3 cut(s)	25, 185, 559
Hpy188I	TCNGA	6 cut(s)	159, 346, 366, 400, 444, 520
Hpy188III	TCNNGA	5 cut(s)	73, 140, 166, 455, 482
Hpy8I	GTNNAC	3 cut(s)	25, 185, 559
Hpy99I	CGWCG	4 cut(s)	95, 119, 382, 434
HpyAV	CCTTC	2 cut(s)	116, 298
HpyCH4III	ACNGT	2 cut(s)	70, 382
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	3 cut(s)	566, 656, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 125, 168, 662
HpyF3I	CTNAG	6 cut(s)	11, 234, 242, 291, 443, 517
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	1 cut(s)	126
KasI	GGCGCC	1 cut(s)	125
Kpn2I	TCCGGA	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	14, 142, 691
LmnI	GCTCC	3 cut(s)	159, 168, 319
Lsp1109I	GCAGC	2 cut(s)	215, 588
LweI	GCATC	1 cut(s)	391
MaeII	ACGT	1 cut(s)	432
MalI	GATC	3 cut(s)	16, 144, 693
MboI	GATC	3 cut(s)	14, 142, 691
MboII	GAAGA	6 cut(s)	190, 311, 382, 431, 512, 691
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	5 cut(s)	421, 567, 641, 650, 666
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	389, 454
MroI	TCCGGA	1 cut(s)	165
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	645
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	2 cut(s)	20, 206
MspI	CCGG	3 cut(s)	105, 166, 543
MunI	CAATTG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	110, 125, 168, 662
NaeI	GCCGGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	3 cut(s)	14, 142, 691
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 602
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	4 cut(s)	86, 154, 256, 478
PkrI	GCNGC	4 cut(s)	205, 316, 332, 578
PleI	GAGTC	2 cut(s)	389, 453
PluTI	GGCGCC	1 cut(s)	129
PpsI	GAGTC	2 cut(s)	389, 453
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
PstNI	CAGNNNCTG	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	206
RigI	GGCCGGCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	204, 315, 331, 577
Sau3AI	GATC	3 cut(s)	14, 142, 691
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	2 cut(s)	389, 454
SduI	GDGCHC	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	391
SfoI	GGCGCC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	5 cut(s)	421, 567, 641, 650, 666
SsiI	CCGC	8 cut(s)	20, 64, 133, 314, 317, 330, 333, 427
SspDI	GGCGCC	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	70, 382
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	145, 377, 605
TasI	AATT	5 cut(s)	421, 567, 641, 650, 666
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	2 cut(s)	317, 333
TfiI	GAWTC	4 cut(s)	86, 154, 256, 478
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	2 cut(s)	203, 576
TspDTI	ATGAA	3 cut(s)	434, 513, 633
TspGWI	ACGGA	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.