Rorug01G0320100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004609
Physical Location & Seq
Forward (+)
43935112 .. 43935640
529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0320100.1

Sequence Viewer

Length: 342 bp
ATGGGAAACTTTGCTGGGAAGGACAAGGGTGTGGTGCATCCGGTTGATGAAAATGAAGGAGAAGACAGAACGCCGTCGCCGAACAGTTTGATGAGAATTAAGGTGCGTATGACTAAGAGACAACTCAAGGAGTTGATGGCGCAGGTGGAAACGAACAAACTAAGTCACGGGAACTCGGAGGAGCTAGGCAGCGCGATCCTGCTGGAATGCTTGGAAGGTAGGCTTAGCGCTCGTGTTGTTGCCGCTGCTGCTGAGAGAGATCAGAAGGTGTCAAAATACGAACGGGGTTGGATGTTGAGCACCGTTTCTGAGGAAGAAGAAGAACATCAACATCTGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.69

Weight (kDa)

5.59

Isoelectric Point (pI)

37.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 243
AclWI GGATC 1 cut(s) 190
AfeI AGCGCT 1 cut(s) 229
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 1 cut(s) 190
Aor51HI AGCGCT 1 cut(s) 229
ApeKI GCWGC 3 cut(s) 189, 245, 248
AspLEI GCGC 3 cut(s) 142, 194, 230
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 201, 232, 235
BccI CCATC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 185
BfoI RGCGCY 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 4 cut(s) 190, 243, 246, 249
BlpI GCTNAGC 1 cut(s) 224
BlsI GCNGC 4 cut(s) 191, 244, 247, 250
BmsI GCATC 1 cut(s) 46
BpiI GAAGAC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 40
BseGI GGATG 2 cut(s) 37, 297
BseMII CTCAG 2 cut(s) 243, 300
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 201, 232, 235
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 112
BsmI GAATGC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 195, 259
Bsp1720I GCTNAGC 1 cut(s) 224
BspACI CCGC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 244, 301
BspFNI CGCG 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 190
BssMI GATC 2 cut(s) 195, 259
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 86, 304
BstDEI CTNAG 5 cut(s) 114, 161, 224, 252, 309
BstF5I GGATG 2 cut(s) 37, 297
BstFNI CGCG 1 cut(s) 194
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 3 cut(s) 142, 194, 230
BstKTI GATC 2 cut(s) 198, 262
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 2 cut(s) 195, 259
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 201, 232, 235
BstV2I GAAGAC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 37, 297
BveI ACCTGC 1 cut(s) 133
CfoI GCGC 3 cut(s) 142, 194, 230
CviJI RGCY 2 cut(s) 184, 223
CviKI_1 RGCY 2 cut(s) 184, 223
DdeI CTNAG 5 cut(s) 114, 161, 224, 252, 309
DpnI GATC 2 cut(s) 197, 261
DpnII GATC 2 cut(s) 195, 259
Eco47III AGCGCT 1 cut(s) 229
FaiI YATR 1 cut(s) 110
FalI AAGNNNNNCTT 2 cut(s) 207, 239
Fnu4HI GCNGC 4 cut(s) 190, 243, 246, 249
FokI GGATG 2 cut(s) 24, 304
Fsp4HI GCNGC 4 cut(s) 190, 243, 246, 249
FspBI CTAG 1 cut(s) 185
GlaI GCGC 3 cut(s) 141, 193, 229
GluI GCNGC 4 cut(s) 190, 243, 246, 249
GsaI CCCAGC 1 cut(s) 18
HaeII RGCGCY 1 cut(s) 231
HapII CCGG 1 cut(s) 41
HhaI GCGC 3 cut(s) 142, 194, 230
Hin6I GCGC 3 cut(s) 140, 192, 228
HinP1I GCGC 3 cut(s) 140, 192, 228
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 178, 264, 310
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 4 cut(s) 13, 50, 209, 259
HpyCH4III ACNGT 2 cut(s) 86, 304
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 5 cut(s) 114, 161, 224, 252, 309
HspAI GCGC 3 cut(s) 140, 192, 228
Kzo9I GATC 2 cut(s) 195, 259
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 4 cut(s) 54, 128, 188, 212
Lsp1109I GCAGC 3 cut(s) 201, 232, 235
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 197, 261
MboI GATC 2 cut(s) 195, 259
MboII GAAGA 4 cut(s) 74, 326, 329, 332
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 2 cut(s) 172, 304
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 212
MvnI CGCG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 195, 259
NmuCI GTSAC 1 cut(s) 164
PaqCI CACCTGC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PctI GAATGC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 191, 244, 247, 250
PspFI CCCAGC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 190, 243, 246, 249
Sau3AI GATC 2 cut(s) 195, 259
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 105, 147, 186, 220, 270
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 96
SsiI CCGC 1 cut(s) 243
SspMI CTAG 1 cut(s) 185
TaaI ACNGT 2 cut(s) 86, 304
TasI AATT 1 cut(s) 96
TauI GCSGC 1 cut(s) 245
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 3 cut(s) 189, 245, 248
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 2 cut(s) 63, 69
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.