Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

43182868 .. 43201944

Gene Structure 19077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG341600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACCGTAGACCATCAGTCACTCACCTTGGGATCTCTAGCGGTGGAGAACAAACCAAACAAGTCATGGGCTTCACTTTTATCACTTCTATCTATATCCATTGTCAGATTTAGTTCCAACGGTGAGACCACAAACTCTTTAGTCACCAGGTTCAGGAAAACTGAAATAGAAGTTGAGGTTGCAGAGCTTGAAAGACAAAGGGCTGATCTTGAGGCTCAATTGAAAAAGGTCAATATCTCCTTGGCTGCAGCTAATTCTCGCCGTCGCAATACCAGGGAAGACAGGGACCAATTTGAGGAAGCTAATACCAAGATTGTGGCTCACTTGGAAACCAAGGAAGATGAACTATCAAAATCCATTGCTTCATGTAAGGTCGAGGCAGATGTTCTACATACATGGATTAATTTTTTGGAAGATACTTGGGTACTCAAGTGCTCATATGCAGAGACCAATGATGAATTGGAGAAACATGAGCACTATTTTGTGAACTTCGCCATTGATCTTCTCTCTGCCTACAAGAAAGAGTTGGGGCCGTCTATCAGCCGTATAGGGAAATTTGTGGAGAATCTTAAGAATTTGAGCAAGAAGTCAGGGGTGGTATCTAATGCAGAGAATGAGGATTCTAAAGCATTAAATCTATTAAGAAGCCTTGAGGGGGAATATTTGGATCATGAAACCAAGATTATTACCACCTTCAGTGTAGTTGGTAATATGAAAGCGCACTTTTATTCAGAACAGGCTAGAACTTCCAGGAAAGAAGACCCAAGGGTTAAGGAACTGTTTGATGATATTGAAAAATTAAGAGCACAATTTGAAGCTGTTGAGAGACCAATTCTAGAAATAGAGACTCCAATTCCCCAAGCTGAAACTCCGTCTGATGACAAGCTGCAGAGTGCTCCATCTGATCTCTCAGCAGAGGGCTCAGTTGCACGGAAAGCTGAGACAGTGAGGCATTCGGAGTCGGGTGCAGTCAAGGTAGAGCAAGTGCTCGACCCTGAAGTTGACCTAGCAAAGCTCGAATCAGAGTTTGGCAAGGTTGGTCAAGACTACTCAACAGAGGAGGTGGGTGAGTGGGAATTTGACGAACTTGAGAGGGAACTAAGATCTGGTGATTCATCAAATACCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

42.45

Weight (kDa)

4.94

Isoelectric Point (pI)

35.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	2 cut(s)	40, 675
AcsI	RAATTY	3 cut(s)	554, 574, 1076
AcuI	CTGAAG	2 cut(s)	679, 1017
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	3 cut(s)	153, 295, 655
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	4 cut(s)	191, 223, 794, 815
AhdI	GACNNNNNGTC	1 cut(s)	16
AjnI	CCWGG	3 cut(s)	146, 272, 749
AjuI	GAANNNNNNNTTGG	2 cut(s)	1011, 1043
AluBI	AGCT	8 cut(s)	187, 251, 302, 818, 863, 886, 938, 1015
AluI	AGCT	8 cut(s)	187, 251, 302, 818, 863, 886, 938, 1015
Alw21I	GWGCWC	5 cut(s)	437, 477, 808, 898, 990
Alw26I	GTCTC	5 cut(s)	119, 440, 820, 839, 935
AlwI	GGATC	2 cut(s)	40, 675
AoxI	GGCC	1 cut(s)	530
ApeKI	GCWGC	3 cut(s)	245, 248, 886
ApoI	RAATTY	3 cut(s)	554, 574, 1076
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	2 cut(s)	286, 530
AsuHPI	GGTGA	5 cut(s)	16, 134, 136, 1079, 1121
AvaII	GGWCC	1 cut(s)	286
BaeI	ACNNNNGTAYC	4 cut(s)	408, 416, 441, 449
BanII	GRGCYC	1 cut(s)	923
BbsI	GAAGAC	2 cut(s)	285, 765
Bbv12I	GWGCWC	5 cut(s)	437, 477, 808, 898, 990
BbvI	GCAGC	3 cut(s)	232, 260, 873
BccI	CCATC	2 cut(s)	21, 907
BceAI	ACGGC	3 cut(s)	246, 517, 528
BciT130I	CCWGG	3 cut(s)	148, 274, 751
BcoDI	GTCTC	5 cut(s)	119, 440, 820, 839, 935
BfaI	CTAG	4 cut(s)	38, 741, 836, 1007
BfmI	CTRYAG	2 cut(s)	246, 887
BfrI	CTTAAG	1 cut(s)	569
BglII	AGATCT	1 cut(s)	1103
BisI	GCNGC	3 cut(s)	246, 249, 887
BlsI	GCNGC	3 cut(s)	247, 250, 888
Bme1390I	CCNGG	3 cut(s)	148, 274, 751
Bme18I	GGWCC	1 cut(s)	286
BmeRI	GACNNNNNGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	286, 530
BmiI	GGNNCC	2 cut(s)	287, 531
BmrFI	CCNGG	3 cut(s)	148, 274, 751
BpiI	GAAGAC	2 cut(s)	285, 765
BpuEI	CTTGAG	4 cut(s)	230, 413, 671, 1109
BsaI	GGTCTC	3 cut(s)	119, 440, 820
BsaJI	CCNNGG	5 cut(s)	27, 240, 273, 333, 764
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 295, 655
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	3 cut(s)	148, 274, 751
BseDI	CCNNGG	5 cut(s)	27, 240, 273, 333, 764
BseLI	CCNNNNNNNGG	3 cut(s)	153, 295, 655
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	924, 930, 936
BseRI	GAGGAG	1 cut(s)	1073
BseXI	GCAGC	3 cut(s)	232, 260, 873
BsgI	GTGCAG	1 cut(s)	987
BshFI	GGCC	1 cut(s)	532
BsiHKAI	GWGCWC	5 cut(s)	437, 477, 808, 898, 990
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	153, 295, 655
BsmAI	GTCTC	5 cut(s)	119, 440, 820, 839, 935
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	1 cut(s)	532
Bso31I	GGTCTC	3 cut(s)	119, 440, 820
Bsp1286I	GDGCHC	6 cut(s)	437, 477, 808, 898, 923, 990
Bsp143I	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	532
BspCNI	CTCAG	3 cut(s)	923, 931, 935
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	287, 531
BspMAI	CTGCAG	2 cut(s)	250, 891
BspPI	GGATC	2 cut(s)	40, 675
BspTI	CTTAAG	1 cut(s)	569
BspTNI	GGTCTC	3 cut(s)	119, 440, 820
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	5 cut(s)	27, 240, 273, 333, 764
BssMI	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
BssT1I	CCWWGG	4 cut(s)	27, 240, 333, 764
Bst2UI	CCWGG	3 cut(s)	148, 274, 751
Bst4CI	ACNGT	4 cut(s)	7, 122, 780, 946
BstAFI	CTTAAG	1 cut(s)	569
BstDEI	CTNAG	4 cut(s)	910, 922, 939, 1100
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	6 cut(s)	35, 208, 502, 670, 907, 1106
BstMAI	GTCTC	5 cut(s)	119, 440, 820, 839, 935
BstMBI	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNI	CCWGG	3 cut(s)	148, 274, 751
BstSCI	CCNGG	3 cut(s)	146, 272, 749
BstSFI	CTRYAG	2 cut(s)	246, 887
BstV1I	GCAGC	3 cut(s)	232, 260, 873
BstV2I	GAAGAC	2 cut(s)	285, 765
BstX2I	RGATCY	2 cut(s)	32, 1103
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	2 cut(s)	32, 1103
BsuRI	GGCC	1 cut(s)	532
BtsIMutI	CAGTG	2 cut(s)	703, 951
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	286, 530
CsiI	ACCWGGT	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	5 cut(s)	66, 366, 396, 470, 671
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	4 cut(s)	910, 922, 939, 1100
DpnI	GATC	6 cut(s)	34, 207, 501, 669, 906, 1105
DpnII	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
DriI	GACNNNNNGTC	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	16
Eco130I	CCWWGG	4 cut(s)	27, 240, 333, 764
Eco24I	GRGCYC	1 cut(s)	923
Eco31I	GGTCTC	3 cut(s)	119, 440, 820
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	679, 1017
EcoRII	CCWGG	3 cut(s)	146, 272, 749
EcoT14I	CCWWGG	4 cut(s)	27, 240, 333, 764
EcoT38I	GRGCYC	1 cut(s)	923
ErhI	CCWWGG	4 cut(s)	27, 240, 333, 764
FaeI	CATG	5 cut(s)	69, 369, 399, 473, 674
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	5 cut(s)	65, 365, 395, 469, 670
FauNDI	CATATG	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	246, 249, 887
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	3 cut(s)	246, 249, 887
FspBI	CTAG	4 cut(s)	38, 741, 836, 1007
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	3 cut(s)	246, 249, 887
HaeIII	GGCC	1 cut(s)	532
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	5 cut(s)	69, 369, 399, 473, 674
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HinfI	GANTC	6 cut(s)	565, 620, 847, 959, 1019, 1112
HphI	GGTGA	5 cut(s)	16, 134, 136, 1079, 1121
Hpy166II	GTNNAC	3 cut(s)	10, 487, 1003
Hpy188I	TCNGA	6 cut(s)	107, 733, 877, 904, 958, 1024
Hpy188III	TCNNGA	5 cut(s)	154, 209, 671, 836, 1043
Hpy8I	GTNNAC	3 cut(s)	10, 487, 1003
Hpy99I	CGWCG	1 cut(s)	267
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	4 cut(s)	7, 122, 780, 946
HpyCH4V	TGCA	7 cut(s)	182, 248, 443, 608, 889, 929, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	4 cut(s)	910, 922, 939, 1100
Hsp92II	CATG	5 cut(s)	69, 369, 399, 473, 674
HspAI	GCGC	1 cut(s)	719
Kzo9I	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
LmnI	GCTCC	1 cut(s)	901
Lsp1109I	GCAGC	3 cut(s)	232, 260, 873
MabI	ACCWGGT	1 cut(s)	146
MaeI	CTAG	4 cut(s)	38, 741, 836, 1007
MaeIII	GTNAC	2 cut(s)	18, 142
MalI	GATC	6 cut(s)	34, 207, 501, 669, 906, 1105
MboI	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
MboII	GAAGA	5 cut(s)	290, 350, 425, 494, 770
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	2 cut(s)	32, 1103
MhlI	GDGCHC	6 cut(s)	437, 477, 808, 898, 923, 990
MlyI	GAGTC	2 cut(s)	841, 968
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	6 cut(s)	402, 570, 632, 641, 771, 800
MspCI	CTTAAG	1 cut(s)	569
MspR9I	CCNGG	3 cut(s)	148, 274, 751
MunI	CAATTG	1 cut(s)	218
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	3 cut(s)	148, 274, 751
MwoI	GCNNNNNNNGC	1 cut(s)	935
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
NlaIII	CATG	5 cut(s)	69, 369, 399, 473, 674
NlaIV	GGNNCC	2 cut(s)	287, 531
NmuCI	GTSAC	2 cut(s)	18, 142
PagI	TCATGA	1 cut(s)	670
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	4 cut(s)	565, 620, 1019, 1112
PfoI	TCCNGGA	1 cut(s)	749
PkrI	GCNGC	3 cut(s)	247, 250, 888
PleI	GAGTC	2 cut(s)	841, 967
PpsI	GAGTC	2 cut(s)	841, 967
PshBI	ATTAAT	1 cut(s)	402
Psp6I	CCWGG	3 cut(s)	146, 272, 749
PspGI	CCWGG	3 cut(s)	146, 272, 749
PspN4I	GGNNCC	2 cut(s)	287, 531
PspPI	GGNCC	2 cut(s)	286, 530
PstI	CTGCAG	2 cut(s)	250, 891
PsuI	RGATCY	2 cut(s)	32, 1103
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	6 cut(s)	402, 570, 632, 641, 771, 800
SatI	GCNGC	3 cut(s)	246, 249, 887
Sau3AI	GATC	6 cut(s)	32, 205, 499, 667, 904, 1103
Sau96I	GGNCC	2 cut(s)	286, 530
SchI	GAGTC	2 cut(s)	841, 968
ScrFI	CCNGG	3 cut(s)	148, 274, 751
SduI	GDGCHC	6 cut(s)	437, 477, 808, 898, 923, 990
SexAI	ACCWGGT	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	246, 887
SinI	GGWCC	1 cut(s)	286
SmlI	CTYRAG	5 cut(s)	209, 428, 569, 650, 1088
SmoI	CTYRAG	5 cut(s)	209, 428, 569, 650, 1088
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	662
SspMI	CTAG	4 cut(s)	38, 741, 836, 1007
StyD4I	CCNGG	3 cut(s)	146, 272, 749
StyI	CCWWGG	4 cut(s)	27, 240, 333, 764
TaaI	ACNGT	4 cut(s)	7, 122, 780, 946
TaqI	TCGA	3 cut(s)	375, 990, 1017
TfiI	GAWTC	4 cut(s)	565, 620, 1019, 1112
Tru1I	TTAA	6 cut(s)	402, 570, 632, 641, 771, 800
Tru9I	TTAA	6 cut(s)	402, 570, 632, 641, 771, 800
TscAI	CASTG	2 cut(s)	703, 951
TseFI	GTSAC	2 cut(s)	18, 142
TseI	GCWGC	3 cut(s)	245, 248, 886
Tsp45I	GTSAC	2 cut(s)	18, 142
TspDTI	ATGAA	6 cut(s)	354, 357, 471, 687, 728, 1104
TspGWI	ACGGA	2 cut(s)	861, 946
TspRI	CASTG	2 cut(s)	703, 951
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	402
XapI	RAATTY	3 cut(s)	554, 574, 1076
XbaI	TCTAGA	1 cut(s)	835
XcmI	CCANNNNNNNNNTGG	2 cut(s)	63, 457
XmiI	GTMKAC	1 cut(s)	9
XspI	CTAG	4 cut(s)	38, 741, 836, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.