RLG00000014849

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004609
Physical Location & Seq
Reverse (-)
58395705 .. 58401033
5329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014849

Sequence Viewer

Length: 822 bp
ATGTCGTGGCTGAGATCGGCGGTGAACAAAGCCGTGGAGGTTGGGAACAGCAACAACCTCACCCGCACCATTAGGAACTACGCCGATTCCGTCGGGAATCGGAGCTTCCGGAGCGTGAAGAAGAATGTACAGAGATTGGAGGAAGCAGCTGTGTCTTGTAGAGGACCTGAAAGGGTTGAGATTCTGAGGAGGTGGGTGATTCTACTGAAAGAGGTGGAAAGACTGAAGCTGTCTCAGGAGGAAGAGAAGGAAAAGGCGGTGGAGCAGAGTAGTGGCGGTGGTGCTTTGGAGGATGTTACCGATAAATTTCCGCGACGCTTTCTTCTGAGTCAGGCTCTGGAGGGCATTACATTGTCTATGGTATTGTGTTTGAGAAATGAATCTGGCATACAATTTTTGCTCTGTCTTACCGGAGGGAAAGAAGTTCACAATGCAATTGTGAGCAGCATACAGGACTTGGCAACGGCTTTTTCGAGCTACAACGATGAAGTATTGGTAAAGCGAGAGGAATTGCTTCAATTTGCACAAAGTGCAATTACAGGATTGAAGATAAATGCTGATCTTGGAAGTCAATTGGGAGGTGTCTTGCTTCTTGATTGTGGCTGGGAAAATAAGCAAAGCAAAGGATGCCCTTATAACTCAAAGAACCATGAGTGCTCTTTGTTTCTAGCTGACACTGTTCTTATCAAGAATGACAACCCAAAAGTGCTGGCTGATATATATAGTCAATTGGGAGGTGTCTTGCTTCTTGAATTAAGAGCAGGAAAAGGGAAACGGAAGTTGGTCAATTGTGGCTGGGAGAAGAACAAGTTTTGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

30.32

Weight (kDa)

8.72

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 636
AccII CGCG 1 cut(s) 313
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 5 cut(s) 20, 64, 257, 276, 311
AcsI RAATTY 1 cut(s) 305
AcuI CTGAAG 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 530
AfaI GTAC 1 cut(s) 129
AgsI TTSAA 3 cut(s) 518, 547, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 5 cut(s) 105, 149, 229, 477, 671
AluI AGCT 5 cut(s) 105, 149, 229, 477, 671
Alw21I GWGCWC 1 cut(s) 659
Alw26I GTCTC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 337
Aor13HI TCCGGA 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 146, 444
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 34, 52, 208
AvaII GGWCC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 158, 456
BceAI ACGGC 2 cut(s) 17, 480
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 668
BisI GCNGC 2 cut(s) 147, 445
BlsI GCNGC 2 cut(s) 148, 446
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmsI GCATC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 2 cut(s) 108, 410
BseAI TCCGGA 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 298, 632
BseMII CTCAG 3 cut(s) 176, 248, 317
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 158, 456
BseYI CCCAGC 2 cut(s) 603, 795
Bsh1236I CGCG 1 cut(s) 313
BsiHKAI GWGCWC 1 cut(s) 659
BsiSI CCGG 2 cut(s) 109, 411
BsmAI GTCTC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 659
Bsp13I TCCGGA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 2 cut(s) 14, 559
BspACI CCGC 5 cut(s) 20, 64, 257, 276, 311
BspCNI CTCAG 3 cut(s) 177, 247, 318
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 127
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 14, 559
Bst4CI ACNGT 1 cut(s) 679
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 2 cut(s) 530, 627
BstAUI TGTACA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 4 cut(s) 11, 185, 234, 326
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 298, 632
BstFNI CGCG 1 cut(s) 313
BstKTI GATC 2 cut(s) 17, 562
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 2 cut(s) 14, 559
BstMWI GCNNNNNNNGC 3 cut(s) 111, 530, 627
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 158, 456
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 298, 632
BtsIMutI CAGTG 1 cut(s) 675
Cac8I GCNNGC 1 cut(s) 711
CaiI CAGNNNCTG 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 650
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 4 cut(s) 11, 185, 234, 326
DpnI GATC 2 cut(s) 16, 561
DpnII GATC 2 cut(s) 14, 559
DraIII CACNNNGTG 1 cut(s) 530
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 164
FaeI CATG 1 cut(s) 653
FaiI YATR 8 cut(s) 359, 389, 449, 636, 651, 719, 721, 723
FatI CATG 1 cut(s) 649
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 147, 445
FokI GGATG 2 cut(s) 305, 639
Fsp4HI GCNGC 2 cut(s) 147, 445
FspBI CTAG 1 cut(s) 668
GluI GCNGC 2 cut(s) 147, 445
GsaI CCCAGC 2 cut(s) 607, 799
GsuI CTGGAG 1 cut(s) 359
HapII CCGG 2 cut(s) 109, 411
HgaI GACGC 1 cut(s) 324
Hin1II CATG 1 cut(s) 653
HinfI GANTC 6 cut(s) 86, 97, 181, 199, 328, 380
HpaII CCGG 2 cut(s) 109, 411
HphI GGTGA 3 cut(s) 34, 52, 208
Hpy166II GTNNAC 2 cut(s) 25, 427
Hpy188I TCNGA 3 cut(s) 102, 186, 327
Hpy188III TCNNGA 7 cut(s) 94, 109, 236, 338, 593, 688, 749
Hpy8I GTNNAC 2 cut(s) 25, 427
Hpy99I CGWCG 2 cut(s) 95, 318
HpyAV CCTTC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4V TGCA 3 cut(s) 434, 524, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 530, 627
HpyF3I CTNAG 4 cut(s) 11, 185, 234, 326
Hsp92II CATG 1 cut(s) 653
Kpn2I TCCGGA 1 cut(s) 108
Kzo9I GATC 2 cut(s) 14, 559
LmnI GCTCC 3 cut(s) 102, 111, 262
Lsp1109I GCAGC 2 cut(s) 158, 456
LweI GCATC 1 cut(s) 617
MaeI CTAG 1 cut(s) 668
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 16, 561
MboI GATC 2 cut(s) 14, 559
MboII GAAGA 6 cut(s) 130, 133, 254, 314, 559, 814
MfeI CAATTG 4 cut(s) 435, 572, 728, 787
MhlI GDGCHC 1 cut(s) 659
MlyI GAGTC 1 cut(s) 337
MroI TCCGGA 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 755
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 109, 411
MunI CAATTG 4 cut(s) 435, 572, 728, 787
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 3 cut(s) 111, 530, 627
NdeII GATC 2 cut(s) 14, 559
NlaIII CATG 1 cut(s) 653
PcsI WCGNNNNNNNCGW 2 cut(s) 87, 470
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 5 cut(s) 86, 97, 181, 199, 380
PkrI GCNGC 2 cut(s) 148, 446
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PpuMI RGGWCCY 1 cut(s) 164
PsiI TTATAA 1 cut(s) 636
Psp5II RGGWCCY 1 cut(s) 164
PspFI CCCAGC 2 cut(s) 603, 795
PspPI GGNCC 1 cut(s) 164
PspPPI RGGWCCY 1 cut(s) 164
PstNI CAGNNNCTG 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 755
SatI GCNGC 2 cut(s) 147, 445
Sau3AI GATC 2 cut(s) 14, 559
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 337
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 1 cut(s) 617
SinI GGWCC 1 cut(s) 164
SsiI CCGC 5 cut(s) 20, 64, 257, 276, 311
SspMI CTAG 1 cut(s) 668
TaaI ACNGT 1 cut(s) 679
TaqI TCGA 1 cut(s) 473
TatI WGTACW 1 cut(s) 127
TfiI GAWTC 5 cut(s) 86, 97, 181, 199, 380
Tru1I TTAA 1 cut(s) 755
Tru9I TTAA 1 cut(s) 755
TscAI CASTG 1 cut(s) 682
TseI GCWGC 2 cut(s) 146, 444
TspDTI ATGAA 2 cut(s) 393, 501
TspGWI ACGGA 2 cut(s) 79, 790
TspRI CASTG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 305
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.