Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

85585 .. 96269

Gene Structure 10685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTAAGCAACAACCTCACCCGCACCGTCAGGAACTACGCCGATTCCGTCGTCCAGCAGGCCGGCCATGCCAACGCTGAAGGCGCCAAGCAGTTTCAGGATCAACTGGGGAATCGGAGCTTCCGGAGCGTGAAGAAGAGTGTACAGAGATTGGAGGAAGCAACTGTGTCTTGTAGAGGACCTGAAATGGCTGAGATTCTGAGGAGGTGGGTGATTCTGCTGAAAGAGGTGGAAAGACTGAAGCTGTCTCAGGAGGAAGAGAAGGAAAAGGCAGTGGAGCAGAGTAGTGGTGGTGGTGCTTCGGAGGATGTTAGTGATATTCGGAGGAAGATTTCGACGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

8.85

Isoelectric Point (pI)

71.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	99, 260
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	144
AluBI	AGCT	2 cut(s)	120, 244
AluI	AGCT	2 cut(s)	120, 244
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	2 cut(s)	60, 64
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	10, 223
AvaII	GGWCC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	85
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	111
BseAI	TCCGGA	1 cut(s)	123
BseGI	GGATG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	183, 191, 263
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	217
BshFI	GGCC	2 cut(s)	62, 66
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	63, 124
BsmAI	GTCTC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	62, 66
Bsp13I	TCCGGA	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	2 cut(s)	62, 66
BspCNI	CTCAG	3 cut(s)	184, 192, 262
BspEI	TCCGGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	28, 166, 340
Bst6I	CTCTTC	2 cut(s)	131, 252
BstACI	GRCGYC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	60, 64
BstDEI	CTNAG	3 cut(s)	192, 200, 249
BstF5I	GGATG	1 cut(s)	313
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 83, 126
BsuRI	GGCC	2 cut(s)	62, 66
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	60, 64
CfoI	GCGC	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	5 cut(s)	62, 66, 120, 191, 244
CviKI_1	RGCY	5 cut(s)	62, 66, 120, 191, 244
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	3 cut(s)	192, 200, 249
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	131, 252
EarI	CTCTTC	2 cut(s)	131, 252
Eco47I	GGWCC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	99, 260
EcoO109I	RGGNCCY	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
FaeI	CATG	1 cut(s)	71
FaiI	YATR	1 cut(s)	69
FatI	CATG	1 cut(s)	67
FauI	CCCGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	320
FseI	GGCCGGCC	1 cut(s)	66
GlaI	GCGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	62, 66
HapII	CCGG	2 cut(s)	63, 124
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	71
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	4 cut(s)	44, 112, 196, 214
HpaII	CCGG	2 cut(s)	63, 124
HphI	GGTGA	2 cut(s)	10, 223
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	117, 201, 304, 324
Hpy188III	TCNNGA	4 cut(s)	31, 98, 124, 251
Hpy8I	GTNNAC	1 cut(s)	143
Hpy99I	CGWCG	2 cut(s)	53, 340
HpyAV	CCTTC	2 cut(s)	74, 256
HpyCH4III	ACNGT	3 cut(s)	28, 166, 340
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 83, 126
HpyF3I	CTNAG	3 cut(s)	192, 200, 249
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	71
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	123
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	117, 126, 277
LpnPI	CCDG	9 cut(s)	16, 44, 68, 76, 83, 92, 137, 195, 236
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	145, 148, 269, 340
Mly113I	GGCGCC	1 cut(s)	84
MnlI	CCTC	9 cut(s)	26, 148, 170, 195, 198, 220, 247, 298, 318
MroI	TCCGGA	1 cut(s)	123
MroNI	GCCGGC	1 cut(s)	62
MspI	CCGG	2 cut(s)	63, 124
MwoI	GCNNNNNNNGC	3 cut(s)	68, 83, 126
NaeI	GCCGGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	84
NdeII	GATC	1 cut(s)	100
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	44, 112, 196, 214
PluTI	GGCGCC	1 cut(s)	87
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	179
PspPPI	RGGWCCY	1 cut(s)	179
RigI	GGCCGGCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	179
SetI	ASST	6 cut(s)	18, 122, 184, 209, 231, 246
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	179
SsiI	CCGC	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	28, 166, 340
TaqI	TCGA	1 cut(s)	335
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	4 cut(s)	44, 112, 196, 214
TscAI	CASTG	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.