Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001688.1

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

32425 .. 39005

Gene Structure 6581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001688.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

atgtttaggctctgtcttaccggagggaaagaagttcacaatgcaattgtgagcagcatacaggacttggcaacggctttttcgagctacaacgatgaagtattggtaaagcgagaggaattgcttcaatttgcacaaagtgcaattacaggattgaagataaatgctgatcttggaagaatagatgatgaggcctctaggttaaagaagaaacttgatggaaggacaccactgctgacatctccttcaactgaaggtcatgacaaagtatcggaagaaacaaaattggaaacagtacaggcattaaaaaaagcacttgcacaaattcgagcttgttccagattagaagggcttttattgaagaagaaactcttgaacagtggagattcttcagagatccatgctcaaaaagttgacaaattgaaggttttatcagaatctcttgctagctcctctgcaaaagcggaaaatcgtatttcagataacagaatccaaaaggaggaagctctaaaagttcgtgcgtctaaagctagtgaagtgggtgaaagagagaaggaaatagaagctgaggttgcagagcttgaaagacaaagggatgaccttgaggctcaattgaaaaaggtcaatatctccttggctgcagctaattctcgccttcgcaataccagggaagagagggaccaatttgaggaagctaataccaagattgtggctcacttggaaacaaaggaagatgaactatcaaaatccattgcttcatgcaaggtcgaggcagatgttctacgtacatggattaattttttggaagatacttgggtactcaagtgctcatatgcagagaccaaggagaagcaggtcaatgatgaattggagaaacaagagcactattttgtgaacttcgccattgatcttctctctgcctacaagaaagagttggggccttctatcagccgtatagggaaatttgtggagaatcttaagaatttgagcaagaagtcaggggtggtatctaatgcagagaatgaggattctaaagcattaaatccattaagaagtcttgaggaggaatatttggatcatgaaaccaagattattaccaccttcagtgtagttgataatatgaaagcgcacttttattcagaacaggctagaacttccaggaaagaagacccaagggttaaggagctgttcaatgatattgaaaaactaagagcacaatttgaagctgttgagagaccaattctagaaatagagactccaattccccaagctggaactccgtctgatgacaagctgcagagtgctccatctgatctctcagcagagggctcagttgcacagaaagctgagacagtgaagcattcggagtcaggtgcagtcaaggtagagcaagtgctcgaccctgaagatgacggtgcagtcaaggtagagcaagtgctcgaccctgaagatgacctagcaaagctcgaatcagagtttggcaaggttggtcaagactactcaacagaggaggtgggtgagtgggaatttgacgagcttgagagggaactaagatctggtgttgagtcaactaccaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

526

Amino Acids

58.94

Weight (kDa)

4.98

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1418
Acc36I	ACCTGC	1 cut(s)	844
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	2 cut(s)	391, 1083
AcsI	RAATTY	4 cut(s)	324, 962, 982, 1526
AcuI	CTGAAG	5 cut(s)	273, 375, 1087, 1425, 1467
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	297, 787, 819
AfiI	CCNNNNNNNGG	3 cut(s)	499, 688, 1271
AflII	CTTAAG	1 cut(s)	977
AjnI	CCWGG	2 cut(s)	665, 1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	1461, 1493
Alw21I	GWGCWC	6 cut(s)	830, 885, 1216, 1306, 1398, 1440
Alw26I	GTCTC	4 cut(s)	833, 1228, 1247, 1343
AlwI	GGATC	2 cut(s)	391, 1083
AoxI	GGCC	2 cut(s)	192, 938
ApeKI	GCWGC	4 cut(s)	54, 638, 641, 1294
ApoI	RAATTY	4 cut(s)	324, 962, 982, 1526
AseI	ATTAAT	1 cut(s)	795
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	1129
AspS9I	GGNCC	2 cut(s)	679, 938
AsuHPI	GGTGA	2 cut(s)	554, 1529
AsuNHI	GCTAGC	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	679
BaeI	ACNNNNGTAYC	4 cut(s)	801, 809, 834, 842
BanII	GRGCYC	1 cut(s)	1331
BbsI	GAAGAC	1 cut(s)	1173
Bbv12I	GWGCWC	6 cut(s)	830, 885, 1216, 1306, 1398, 1440
BbvCI	CCTCAGC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	66, 625, 653, 1281
BccI	CCATC	2 cut(s)	212, 1315
BceAI	ACGGC	2 cut(s)	90, 936
BciT130I	CCWGG	2 cut(s)	667, 1159
BcoDI	GTCTC	4 cut(s)	833, 1228, 1247, 1343
BfaI	CTAG	6 cut(s)	198, 447, 531, 1149, 1244, 1457
BfmI	CTRYAG	2 cut(s)	639, 1295
BfrI	CTTAAG	1 cut(s)	977
BfuAI	ACCTGC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	1553
BisI	GCNGC	4 cut(s)	55, 639, 642, 1295
BlsI	GCNGC	4 cut(s)	56, 640, 643, 1296
Bme1390I	CCNGG	2 cut(s)	667, 1159
Bme18I	GGWCC	1 cut(s)	679
BmgT120I	GGNCC	2 cut(s)	679, 938
BmiI	GGNNCC	2 cut(s)	680, 939
BmrFI	CCNGG	2 cut(s)	667, 1159
BmtI	GCTAGC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	1173
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	623, 806, 1079, 1559
BsaAI	YACGTR	1 cut(s)	785
BsaI	GGTCTC	2 cut(s)	833, 1228
BsaJI	CCNNGG	4 cut(s)	633, 666, 843, 1172
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	3 cut(s)	499, 688, 1271
Bse3DI	GCAATG	1 cut(s)	750
BseBI	CCWGG	2 cut(s)	667, 1159
BseDI	CCNNGG	4 cut(s)	633, 666, 843, 1172
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	3 cut(s)	499, 688, 1271
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	4 cut(s)	558, 1332, 1338, 1344
BseRI	GAGGAG	3 cut(s)	442, 1076, 1523
BseXI	GCAGC	4 cut(s)	66, 625, 653, 1281
BsgI	GTGCAG	2 cut(s)	1395, 1437
BshFI	GGCC	2 cut(s)	194, 940
BsiHKAI	GWGCWC	6 cut(s)	830, 885, 1216, 1306, 1398, 1440
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	3 cut(s)	499, 688, 1271
BsmAI	GTCTC	4 cut(s)	833, 1228, 1247, 1343
BsmFI	GGGAC	1 cut(s)	692
BsmI	GAATGC	1 cut(s)	1360
BsnI	GGCC	2 cut(s)	194, 940
Bso31I	GGTCTC	2 cut(s)	833, 1228
Bsp1286I	GDGCHC	7 cut(s)	830, 885, 1216, 1306, 1331, 1398, 1440
Bsp143I	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	2 cut(s)	194, 940
BspCNI	CTCAG	4 cut(s)	559, 1331, 1339, 1343
BspHI	TCATGA	2 cut(s)	259, 1078
BspLI	GGNNCC	2 cut(s)	680, 939
BspMAI	CTGCAG	2 cut(s)	643, 1299
BspMI	ACCTGC	1 cut(s)	844
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	2 cut(s)	391, 1083
BspTI	CTTAAG	1 cut(s)	977
BspTNI	GGTCTC	2 cut(s)	833, 1228
BsrDI	GCAATG	1 cut(s)	750
BssECI	CCNNGG	4 cut(s)	633, 666, 843, 1172
BssMI	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
BssT1I	CCWWGG	3 cut(s)	633, 843, 1172
Bst2UI	CCWGG	2 cut(s)	667, 1159
Bst4CI	ACNGT	4 cut(s)	295, 380, 1354, 1415
Bst6I	CTCTTC	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	977
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	785
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	6 cut(s)	567, 1208, 1318, 1330, 1347, 1550
BstF5I	GGATG	1 cut(s)	601
BstHHI	GCGC	1 cut(s)	1129
BstKTI	GATC	6 cut(s)	172, 399, 910, 1078, 1315, 1556
BstMAI	GTCTC	4 cut(s)	833, 1228, 1247, 1343
BstMBI	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 527, 572, 1343
BstNI	CCWGG	2 cut(s)	667, 1159
BstSCI	CCNGG	2 cut(s)	665, 1157
BstSFI	CTRYAG	2 cut(s)	639, 1295
BstSNI	TACGTA	1 cut(s)	785
BstV1I	GCAGC	4 cut(s)	66, 625, 653, 1281
BstV2I	GAAGAC	1 cut(s)	1173
BstX2I	RGATCY	2 cut(s)	396, 1553
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	2 cut(s)	396, 1553
BsuRI	GGCC	2 cut(s)	194, 940
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	4 cut(s)	230, 385, 1111, 1359
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	1 cut(s)	448
CciI	TCATGA	2 cut(s)	259, 1078
CfoI	GCGC	1 cut(s)	1129
Cfr13I	GGNCC	2 cut(s)	679, 938
CseI	GACGC	1 cut(s)	510
Csp6I	GTAC	3 cut(s)	296, 786, 818
CviAII	CATG	5 cut(s)	260, 401, 759, 789, 1079
CviQI	GTAC	3 cut(s)	296, 786, 818
DdeI	CTNAG	6 cut(s)	567, 1208, 1318, 1330, 1347, 1550
DpnI	GATC	6 cut(s)	171, 398, 909, 1077, 1314, 1555
DpnII	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
DraIII	CACNNNGTG	1 cut(s)	140
DrdI	GACNNNNNNGTC	1 cut(s)	1418
DseDI	GACNNNNNNGTC	1 cut(s)	1418
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
Eco105I	TACGTA	1 cut(s)	785
Eco130I	CCWWGG	3 cut(s)	633, 843, 1172
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	1331
Eco31I	GGTCTC	2 cut(s)	833, 1228
Eco47I	GGWCC	1 cut(s)	679
Eco57I	CTGAAG	5 cut(s)	273, 375, 1087, 1425, 1467
EcoO109I	RGGNCCY	1 cut(s)	938
EcoRII	CCWGG	2 cut(s)	665, 1157
EcoT14I	CCWWGG	3 cut(s)	633, 843, 1172
EcoT38I	GRGCYC	1 cut(s)	1331
ErhI	CCWWGG	3 cut(s)	633, 843, 1172
FaeI	CATG	5 cut(s)	263, 404, 762, 792, 1082
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	5 cut(s)	259, 400, 758, 788, 1078
FauNDI	CATATG	1 cut(s)	832
Fnu4HI	GCNGC	4 cut(s)	55, 639, 642, 1295
FokI	GGATG	1 cut(s)	608
FriOI	GRGCYC	1 cut(s)	1331
Fsp4HI	GCNGC	4 cut(s)	55, 639, 642, 1295
FspBI	CTAG	6 cut(s)	198, 447, 531, 1149, 1244, 1457
GlaI	GCGC	1 cut(s)	1128
GluI	GCNGC	4 cut(s)	55, 639, 642, 1295
HaeIII	GGCC	2 cut(s)	194, 940
HapII	CCGG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	1129
Hin1II	CATG	5 cut(s)	263, 404, 762, 792, 1082
Hin6I	GCGC	1 cut(s)	1127
HinP1I	GCGC	1 cut(s)	1127
HincII	GTYRAC	2 cut(s)	415, 1569
HindII	GTYRAC	2 cut(s)	415, 1569
HinfI	GANTC	9 cut(s)	386, 437, 489, 973, 1028, 1255, 1367, 1469, 1565
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	554, 1529
Hpy166II	GTNNAC	4 cut(s)	37, 415, 895, 1569
Hpy188I	TCNGA	9 cut(s)	274, 394, 436, 481, 1141, 1285, 1312, 1366, 1474
Hpy188III	TCNNGA	7 cut(s)	260, 339, 373, 1058, 1079, 1244, 1493
Hpy8I	GTNNAC	4 cut(s)	37, 415, 895, 1569
HpyAV	CCTTC	9 cut(s)	216, 248, 255, 341, 418, 547, 665, 951, 1111
HpyCH4III	ACNGT	4 cut(s)	295, 380, 1354, 1415
HpyCH4IV	ACGT	1 cut(s)	784
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 527, 572, 1343
HpyF3I	CTNAG	6 cut(s)	567, 1208, 1318, 1330, 1347, 1550
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	5 cut(s)	263, 404, 762, 792, 1082
HspAI	GCGC	1 cut(s)	1127
Kzo9I	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
LmnI	GCTCC	3 cut(s)	455, 1183, 1309
Lsp1109I	GCAGC	4 cut(s)	66, 625, 653, 1281
MaeI	CTAG	6 cut(s)	198, 447, 531, 1149, 1244, 1457
MaeII	ACGT	1 cut(s)	784
MalI	GATC	6 cut(s)	171, 398, 909, 1077, 1314, 1555
MboI	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
MfeI	CAATTG	2 cut(s)	45, 611
MflI	RGATCY	2 cut(s)	396, 1553
MhlI	GDGCHC	7 cut(s)	830, 885, 1216, 1306, 1331, 1398, 1440
MlyI	GAGTC	3 cut(s)	1249, 1376, 1574
MroXI	GAANNNNTTC	1 cut(s)	123
MseI	TTAA	7 cut(s)	203, 305, 795, 978, 1040, 1049, 1179
MspCI	CTTAAG	1 cut(s)	977
MspI	CCGG	1 cut(s)	21
MspR9I	CCNGG	2 cut(s)	667, 1159
MunI	CAATTG	2 cut(s)	45, 611
Mva1269I	GAATGC	1 cut(s)	1360
MvaI	CCWGG	2 cut(s)	667, 1159
MwoI	GCNNNNNNNGC	4 cut(s)	140, 527, 572, 1343
NdeI	CATATG	1 cut(s)	832
NdeII	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	263, 404, 762, 792, 1082
NlaIV	GGNNCC	2 cut(s)	680, 939
PagI	TCATGA	2 cut(s)	259, 1078
PceI	AGGCCT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	1 cut(s)	1360
PdmI	GAANNNNTTC	1 cut(s)	123
PfeI	GAWTC	6 cut(s)	386, 437, 489, 973, 1028, 1469
PfoI	TCCNGGA	1 cut(s)	1157
PkrI	GCNGC	4 cut(s)	56, 640, 643, 1296
PleI	GAGTC	3 cut(s)	1249, 1375, 1573
PpsI	GAGTC	3 cut(s)	1249, 1375, 1573
Ppu21I	YACGTR	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	795
Psp6I	CCWGG	2 cut(s)	665, 1157
PspGI	CCWGG	2 cut(s)	665, 1157
PspN4I	GGNNCC	2 cut(s)	680, 939
PspPI	GGNCC	2 cut(s)	679, 938
PstI	CTGCAG	2 cut(s)	643, 1299
PsuI	RGATCY	2 cut(s)	396, 1553
RsaI	GTAC	3 cut(s)	297, 787, 819
RsaNI	GTAC	3 cut(s)	296, 786, 818
SaqAI	TTAA	7 cut(s)	203, 305, 795, 978, 1040, 1049, 1179
SatI	GCNGC	4 cut(s)	55, 639, 642, 1295
Sau3AI	GATC	6 cut(s)	169, 396, 907, 1075, 1312, 1553
Sau96I	GGNCC	2 cut(s)	679, 938
SchI	GAGTC	3 cut(s)	1249, 1376, 1574
ScrFI	CCNGG	2 cut(s)	667, 1159
SduI	GDGCHC	7 cut(s)	830, 885, 1216, 1306, 1331, 1398, 1440
SfcI	CTRYAG	2 cut(s)	639, 1295
SinI	GGWCC	1 cut(s)	679
SmlI	CTYRAG	5 cut(s)	602, 821, 977, 1058, 1538
SmoI	CTYRAG	5 cut(s)	602, 821, 977, 1058, 1538
SnaBI	TACGTA	1 cut(s)	785
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	1 cut(s)	1070
SspMI	CTAG	6 cut(s)	198, 447, 531, 1149, 1244, 1457
StuI	AGGCCT	1 cut(s)	194
StyD4I	CCNGG	2 cut(s)	665, 1157
StyI	CCWWGG	3 cut(s)	633, 843, 1172
TaaI	ACNGT	4 cut(s)	295, 380, 1354, 1415
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	6 cut(s)	83, 328, 768, 1398, 1440, 1467
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	6 cut(s)	386, 437, 489, 973, 1028, 1469
Tru1I	TTAA	7 cut(s)	203, 305, 795, 978, 1040, 1049, 1179
Tru9I	TTAA	7 cut(s)	203, 305, 795, 978, 1040, 1049, 1179
TscAI	CASTG	4 cut(s)	237, 385, 1111, 1359
TseI	GCWGC	4 cut(s)	54, 638, 641, 1294
TspDTI	ATGAA	6 cut(s)	111, 747, 750, 879, 1095, 1136
TspGWI	ACGGA	1 cut(s)	1269
TspRI	CASTG	4 cut(s)	237, 385, 1111, 1359
Vha464I	CTTAAG	1 cut(s)	977
VpaK11BI	GGWCC	1 cut(s)	679
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	4 cut(s)	324, 962, 982, 1526
XbaI	TCTAGA	1 cut(s)	1243
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	6 cut(s)	198, 447, 531, 1149, 1244, 1457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.