Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004609

Physical Location & Seq

Genomic Coordinates Reverse (-)

85579 .. 90056

Gene Structure 4478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG000700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGAGATTCAGAGGGCGGTGGAGGTTGGGAACAGCAACAACCTCACCCGCACCGTCAGGAACTACGCCGATTCCGTCGTCCAGCAGGCCGGCCATGCCAACGCTGAAGGCGCCAAGCAGTTTCAGGATCAACTGGGGAATCGGAGCTTCCGGAGCGTGAAGAAGAGTGTACAGAGATTGGAGGAAGCAACTGTGTCTTGTAGAGGACCTGAAATGGCTGAGATTCTGAGGAGGTGGGTGATTCTGCTGAAAGAGGTGGAAAGACTGAAGCTGTCTCAGGAGGAAGAGAAGGAAAAGGCAGTGGAGCAGAGTAGTGGTGGTGGTGCTTCGGAGGATGTTAGTGATATTCGGAGGAAGATTTCGACGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.84

Weight (kDa)

7.87

Isoelectric Point (pI)

67.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13560
fragaria_vesca	FvH4_7g20871 FvH4_7g20871
malus_domestica	MD07G1186500.v1.1 MD13G1157000.v1.1
prunus_persica	Prupe.2G225300_v2.0.a1
pyrus_communis	pycom01g14560 pycom07g17780
rosa_chinensis	RchiOBHm_Chr1g0365121 RchiOBHm_Chr7g0221351
rosa_laevigata	RLG00000014849 RLG00000027440 RLG00000028869
rosa_multiflora	Rmu_co8467635.1_g000001 Rmu_sc0001688.1_g000008
rosa_roxburghii	Rroxscaffold_4G00291410 Rroxscaffold_4G00291920
rosa_rugosa	Rorug01G0320000 Rorug01G0320100
rosa_samantha	Rh1AG328700 Rh1BG290300 Rh1CG307000 Rh1DG321900 Rh2DG217200 Rh3AG000700 Rh3BG000500 Rh3CG000500 Rh3DG000700 Rh7AG341600 Rh7CG359500
rosa_wichuraiana	Rw1G029170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	3 cut(s)	5, 20, 52
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	1 cut(s)	94
AcuI	CTGAAG	2 cut(s)	129, 290
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	174
AluBI	AGCT	2 cut(s)	150, 274
AluI	AGCT	2 cut(s)	150, 274
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	138
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	2 cut(s)	90, 94
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	40, 253
AvaII	GGWCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	115
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	153
BseGI	GGATG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	213, 221, 293
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	247
BshFI	GGCC	2 cut(s)	92, 96
BshNI	GGYRCC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	93, 154
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	2 cut(s)	92, 96
Bsp13I	TCCGGA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	3 cut(s)	5, 20, 52
BspANI	GGCC	2 cut(s)	92, 96
BspCNI	CTCAG	3 cut(s)	214, 222, 292
BspEI	TCCGGA	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	1 cut(s)	130
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	58, 196, 370
Bst6I	CTCTTC	2 cut(s)	161, 282
BstACI	GRCGYC	1 cut(s)	114
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	90, 94
BstDEI	CTNAG	3 cut(s)	222, 230, 279
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	130
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 113, 156
BsuRI	GGCC	2 cut(s)	92, 96
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	90, 94
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	92, 96, 150, 221, 274
CviKI_1	RGCY	5 cut(s)	92, 96, 150, 221, 274
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	3 cut(s)	222, 230, 279
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	161, 282
EarI	CTCTTC	2 cut(s)	161, 282
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	209
Eco57I	CTGAAG	2 cut(s)	129, 290
EcoO109I	RGGNCCY	1 cut(s)	209
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
FaeI	CATG	1 cut(s)	101
FaiI	YATR	1 cut(s)	99
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	350
FseI	GGCCGGCC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	92, 96
HapII	CCGG	2 cut(s)	93, 154
HhaI	GCGC	1 cut(s)	116
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HinfI	GANTC	5 cut(s)	10, 74, 142, 226, 244
HpaII	CCGG	2 cut(s)	93, 154
HphI	GGTGA	2 cut(s)	40, 253
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	5 cut(s)	15, 147, 231, 334, 354
Hpy188III	TCNNGA	4 cut(s)	61, 128, 154, 281
Hpy8I	GTNNAC	1 cut(s)	173
Hpy99I	CGWCG	2 cut(s)	83, 370
HpyAV	CCTTC	2 cut(s)	104, 286
HpyCH4III	ACNGT	3 cut(s)	58, 196, 370
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 113, 156
HpyF3I	CTNAG	3 cut(s)	222, 230, 279
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	114
KasI	GGCGCC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	147, 156, 307
LpnPI	CCDG	9 cut(s)	46, 74, 98, 106, 113, 122, 167, 225, 266
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	4 cut(s)	175, 178, 299, 370
Mly113I	GGCGCC	1 cut(s)	114
MroI	TCCGGA	1 cut(s)	153
MroNI	GCCGGC	1 cut(s)	92
MspI	CCGG	2 cut(s)	93, 154
MwoI	GCNNNNNNNGC	3 cut(s)	98, 113, 156
NaeI	GCCGGC	1 cut(s)	94
NarI	GGCGCC	1 cut(s)	114
NdeII	GATC	1 cut(s)	130
NgoMIV	GCCGGC	1 cut(s)	92
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	94
PfeI	GAWTC	5 cut(s)	10, 74, 142, 226, 244
PluTI	GGCGCC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
RigI	GGCCGGCC	1 cut(s)	96
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	1 cut(s)	209
SetI	ASST	7 cut(s)	30, 48, 152, 214, 239, 261, 276
SfoI	GGCGCC	1 cut(s)	115
SinI	GGWCC	1 cut(s)	209
SsiI	CCGC	3 cut(s)	5, 20, 52
SspDI	GGCGCC	1 cut(s)	113
TaaI	ACNGT	3 cut(s)	58, 196, 370
TaqI	TCGA	1 cut(s)	365
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	5 cut(s)	10, 74, 142, 226, 244
TscAI	CASTG	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.