RLG00000001472

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008892
Physical Location & Seq
Forward (+)
16027472 .. 16029159
1688 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001472

Sequence Viewer

Length: 570 bp
ATGTCATCTTCTAAGCCTCCAAATTTTGATCTCAGATCTACTGGATCCTCTTCCAGATCAACTTGCACCTTTAATTCCTTCAATGGGCCCTTCTCTGACGATCACAACTCAATCTTCTATCCCCCAAAGCACAAGATTTTAAGTGAATTGAAGTGGATGAGTCCGGAACGAAGATGCGAACATCATCAACACGTCCAAGGTGGGGTCGCAGTCGAGGAAGCAGTTCTCGACAGGAGAGAAAGCGGAGAGGGCAAGAGGGTACACCTTGCCGGTGGCCACCGAGTTCATGAAGAAGATGTGCGCGTGGGACTCAGGCATCACCGCTGCCACTCCGGCCGCGATGAGAGCCATCGGCGCATGCTCTGTGATGTTGATGGCGTCGAAGCCGTAGACGATGAAGATCAGGAGCTCAATTTGAAACCAAAGGAGGAAGAAAGAGAGCAGTCCATCAACAATGAAGATCTAGAGCTCTATTCGAAATTAAAGGAGGAAGGAATGAAGATCTGGGATTTTGAGAAGATGAAGATGAATCTGGGAAAAGATGAAGATCTGGGATTTAGAGAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.87

Weight (kDa)

5.64

Isoelectric Point (pI)

72.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 390
AccII CGCG 2 cut(s) 303, 339
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 3 cut(s) 243, 322, 337
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 2 cut(s) 274, 334
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 1 cut(s) 378
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 2 cut(s) 84, 202
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 82, 151, 418
AjiI CACGTC 2 cut(s) 193, 567
AluBI AGCT 2 cut(s) 409, 469
AluI AGCT 2 cut(s) 409, 469
Alw21I GWGCWC 2 cut(s) 411, 471
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 2 cut(s) 39, 52
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 86, 274, 334
ApaI GGGCCC 1 cut(s) 90
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 1 cut(s) 22
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 303, 357
AspS9I GGNCC 2 cut(s) 86, 87
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 276
BamHI GGATCC 1 cut(s) 44
BanII GRGCYC 3 cut(s) 90, 411, 471
Bbv12I GWGCWC 2 cut(s) 411, 471
BbvI GCAGC 1 cut(s) 311
BccI CCATC 3 cut(s) 357, 368, 455
BceAI ACGGC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 333
BglII AGATCT 4 cut(s) 35, 460, 501, 547
BisI GCNGC 2 cut(s) 325, 337
BlsI GCNGC 2 cut(s) 326, 338
BmgBI CACGTC 2 cut(s) 193, 567
BmgT120I GGNCC 2 cut(s) 86, 87
BmiI GGNNCC 2 cut(s) 46, 88
BmsI GCATC 2 cut(s) 164, 325
Bpu14I TTCGAA 1 cut(s) 476
BsaBI GATNNNNATC 2 cut(s) 399, 546
BsaHI GRCGYC 1 cut(s) 378
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 2 cut(s) 84, 202
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 1 cut(s) 46
Bse8I GATNNNNATC 2 cut(s) 399, 546
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 2 cut(s) 399, 546
BseLI CCNNNNNNNGG 2 cut(s) 84, 202
BseMII CTCAG 2 cut(s) 46, 325
BseNI ACTGG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 90
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 311
Bsh1236I CGCG 2 cut(s) 303, 339
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 3 cut(s) 88, 276, 336
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 2 cut(s) 411, 471
BsiSI CCGG 3 cut(s) 164, 270, 333
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 2 cut(s) 84, 202
BsmAI GTCTC 1 cut(s) 557
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 3 cut(s) 88, 276, 336
Bsp119I TTCGAA 1 cut(s) 476
Bsp120I GGGCCC 1 cut(s) 86
Bsp1286I GDGCHC 3 cut(s) 90, 411, 471
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
BspACI CCGC 3 cut(s) 243, 322, 337
BspANI GGCC 3 cut(s) 88, 276, 336
BspCNI CTCAG 2 cut(s) 45, 324
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 2 cut(s) 303, 339
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 46, 88
BspPI GGATC 2 cut(s) 39, 52
BspT104I TTCGAA 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 1 cut(s) 46
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 55
BstACI GRCGYC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 3 cut(s) 12, 32, 311
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 2 cut(s) 303, 339
BstHHI GCGC 2 cut(s) 303, 357
BstKTI GATC 9 cut(s) 31, 38, 47, 59, 103, 403, 463, 504, 550
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 249, 333, 345, 354
BstNSI RCATGY 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 90
BstUI CGCG 2 cut(s) 303, 339
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 5 cut(s) 35, 44, 460, 501, 547
BstYI RGATCY 5 cut(s) 35, 44, 460, 501, 547
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 3 cut(s) 88, 276, 336
BtgZI GCGATG 1 cut(s) 354
BtrI CACGTC 2 cut(s) 193, 567
BtsCI GGATG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 359
CciI TCATGA 1 cut(s) 286
CfoI GCGC 2 cut(s) 303, 357
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 86, 87
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 260
CviAII CATG 2 cut(s) 287, 358
CviJI RGCY 8 cut(s) 16, 88, 276, 336, 348, 386, 409, 469
CviKI_1 RGCY 8 cut(s) 16, 88, 276, 336, 348, 386, 409, 469
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 3 cut(s) 12, 32, 311
DpnI GATC 9 cut(s) 30, 37, 46, 58, 102, 402, 462, 503, 549
DpnII GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
EaeI YGGCCR 2 cut(s) 274, 334
EagI CGGCCG 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
Ecl136II GAGCTC 2 cut(s) 409, 469
EclXI CGGCCG 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 3 cut(s) 90, 411, 471
Eco52I CGGCCG 1 cut(s) 334
Eco53kI GAGCTC 2 cut(s) 409, 469
EcoICRI GAGCTC 2 cut(s) 409, 469
EcoO109I RGGNCCY 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 3 cut(s) 90, 411, 471
ErhI CCWWGG 1 cut(s) 196
Esp3I CGTCTC 1 cut(s) 557
FaeI CATG 2 cut(s) 290, 361
FaiI YATR 2 cut(s) 288, 359
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 286, 357
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 325, 337
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 3 cut(s) 90, 411, 471
Fsp4HI GCNGC 2 cut(s) 325, 337
FspBI CTAG 1 cut(s) 464
GlaI GCGC 2 cut(s) 302, 356
GluI GCNGC 2 cut(s) 325, 337
HaeIII GGCC 3 cut(s) 88, 276, 336
HapII CCGG 3 cut(s) 164, 270, 333
HgaI GACGC 1 cut(s) 367
HhaI GCGC 2 cut(s) 303, 357
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 2 cut(s) 290, 361
Hin6I GCGC 2 cut(s) 301, 355
HinP1I GCGC 2 cut(s) 301, 355
HinfI GANTC 3 cut(s) 160, 309, 529
HpaII CCGG 3 cut(s) 164, 270, 333
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 262, 391
Hpy188I TCNGA 2 cut(s) 35, 97
Hpy188III TCNNGA 6 cut(s) 54, 164, 227, 287, 404, 464
Hpy8I GTNNAC 2 cut(s) 262, 391
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 88, 100, 485
HpyCH4IV ACGT 2 cut(s) 192, 566
HpyCH4V TGCA 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 4 cut(s) 249, 333, 345, 354
HpyF3I CTNAG 3 cut(s) 12, 32, 311
HpySE526I ACGT 2 cut(s) 192, 566
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 2 cut(s) 290, 361
HspAI GCGC 2 cut(s) 301, 355
Kpn2I TCCGGA 1 cut(s) 163
Kzo9I GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 2 cut(s) 164, 325
MaeI CTAG 1 cut(s) 464
MaeII ACGT 2 cut(s) 192, 566
MalI GATC 9 cut(s) 30, 37, 46, 58, 102, 402, 462, 503, 549
MboI GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
MflI RGATCY 5 cut(s) 35, 44, 460, 501, 547
MhlI GDGCHC 3 cut(s) 90, 411, 471
MlsI TGGCCA 1 cut(s) 276
MluCI AATT 5 cut(s) 22, 73, 146, 412, 479
MluNI TGGCCA 1 cut(s) 276
MlyI GAGTC 2 cut(s) 169, 303
MnlI CCTC 7 cut(s) 27, 58, 208, 241, 249, 421, 481
Mox20I TGGCCA 1 cut(s) 276
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 276
MseI TTAA 3 cut(s) 72, 140, 482
Msp20I TGGCCA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 3 cut(s) 164, 270, 333
MvnI CGCG 2 cut(s) 303, 339
MwoI GCNNNNNNNGC 4 cut(s) 249, 333, 345, 354
NdeII GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
NlaIII CATG 2 cut(s) 290, 361
NlaIV GGNNCC 2 cut(s) 46, 88
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 476
PaeI GCATGC 1 cut(s) 361
PagI TCATGA 1 cut(s) 286
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 2 cut(s) 326, 338
PleI GAGTC 2 cut(s) 168, 303
PpsI GAGTC 2 cut(s) 168, 303
Psp124BI GAGCTC 2 cut(s) 411, 471
PspN4I GGNNCC 2 cut(s) 46, 88
PspOMI GGGCCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 86, 87
PsuI RGATCY 5 cut(s) 35, 44, 460, 501, 547
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SacI GAGCTC 2 cut(s) 411, 471
SaqAI TTAA 3 cut(s) 72, 140, 482
SatI GCNGC 2 cut(s) 325, 337
Sau3AI GATC 9 cut(s) 28, 35, 44, 56, 100, 400, 460, 501, 547
Sau96I GGNCC 2 cut(s) 86, 87
SchI GAGTC 2 cut(s) 169, 303
SduI GDGCHC 3 cut(s) 90, 411, 471
SetI ASST 7 cut(s) 71, 195, 202, 267, 411, 471, 569
SfaNI GCATC 2 cut(s) 164, 325
SfuI TTCGAA 1 cut(s) 476
SphI GCATGC 1 cut(s) 361
Sse9I AATT 5 cut(s) 22, 73, 146, 412, 479
SsiI CCGC 3 cut(s) 243, 322, 337
SspMI CTAG 1 cut(s) 464
SstI GAGCTC 2 cut(s) 411, 471
StyI CCWWGG 1 cut(s) 196
TaiI ACGT 2 cut(s) 195, 569
TaqI TCGA 4 cut(s) 213, 228, 381, 476
TasI AATT 5 cut(s) 22, 73, 146, 412, 479
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 3 cut(s) 72, 140, 482
Tru9I TTAA 3 cut(s) 72, 140, 482
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 8 cut(s) 275, 303, 411, 471, 512, 536, 542, 558
XapI RAATTY 1 cut(s) 22
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.