RLG00000030161

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008892
Physical Location & Seq
Forward (+)
56594247 .. 56594808
562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030161

Sequence Viewer

Length: 399 bp
ATGGGTAATACCCATGATACCCATACCCGGTCTTATTTTTCGCGGGTATTTTCATACCCACCCATCGGATGGCTCTCGCTAAGCTCAGTGCTCACCACATCACCAGTCCTGCACTCCTCGCAAATCCTCGTCTCCGATTCTAGAGGGTACCACCTCGCCAATGGCCACCGAGTTTGTCAAGAAGATGCACACGTAGGACTCCGCCACTCTGGCCCTGCCGAGAGACACCAACGCGTGCGCTGTGACGTTGATGGAGTCGAAGCCGTAGACGACGAAGATCGGGAGCTCAATTCGAAATCAATGGAGAAAGAAAGAGAGCTGTCCATCAGCAACGAAGATCTAGAGCTCTATTCAAAATTAAAGGAAGAAAGAATGAAGATTTGGGAATTGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

6.05

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 69
AccI GTMKAC 1 cut(s) 267
AccII CGCG 2 cut(s) 43, 234
AciI CCGC 2 cut(s) 43, 202
AcoI YGGCCR 1 cut(s) 163
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 3 cut(s) 27, 65, 69
AflIII ACRYGT 2 cut(s) 190, 232
AgsI TTSAA 1 cut(s) 354
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 4 cut(s) 84, 286, 319, 346
AluI AGCT 4 cut(s) 84, 286, 319, 346
Alw21I GWGCWC 3 cut(s) 93, 288, 348
Alw26I GTCTC 2 cut(s) 136, 217
AoxI GGCC 2 cut(s) 163, 211
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 85, 93
AsuII TTCGAA 1 cut(s) 293
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 2 cut(s) 288, 348
Bbv12I GWGCWC 3 cut(s) 93, 288, 348
BccI CCATC 4 cut(s) 63, 71, 245, 332
BceAI ACGGC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 2 cut(s) 136, 217
BfaI CTAG 2 cut(s) 141, 341
BglI GCCNNNNNGGC 1 cut(s) 210
BglII AGATCT 1 cut(s) 337
BlpI GCTNAGC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 175
Bpu1102I GCTNAGC 1 cut(s) 80
Bpu14I TTCGAA 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 193
Bsc4I CCNNNNNNNGG 3 cut(s) 27, 65, 69
Bse1I ACTGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 3 cut(s) 27, 65, 69
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 95
Bsh1236I CGCG 2 cut(s) 43, 234
BshFI GGCC 2 cut(s) 165, 213
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 3 cut(s) 93, 288, 348
BsiSI CCGG 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 27, 65, 69
BsmAI GTCTC 2 cut(s) 136, 217
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 2 cut(s) 165, 213
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 3 cut(s) 93, 288, 348
Bsp143I GATC 2 cut(s) 277, 337
Bsp1720I GCTNAGC 1 cut(s) 80
BspACI CCGC 2 cut(s) 43, 202
BspANI GGCC 2 cut(s) 165, 213
BspCNI CTCAG 1 cut(s) 98
BspFNI CGCG 2 cut(s) 43, 234
BspLI GGNNCC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 293
BspT107I GGYRCC 1 cut(s) 147
BsrI ACTGG 1 cut(s) 104
BssMI GATC 2 cut(s) 277, 337
BstBAI YACGTR 1 cut(s) 193
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 2 cut(s) 80, 85
BstF5I GGATG 1 cut(s) 74
BstFNI CGCG 2 cut(s) 43, 234
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 2 cut(s) 280, 340
BstMAI GTCTC 2 cut(s) 136, 217
BstMBI GATC 2 cut(s) 277, 337
BstMWI GCNNNNNNNGC 2 cut(s) 118, 210
BstSCI CCNGG 1 cut(s) 26
BstUI CGCG 2 cut(s) 43, 234
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 2 cut(s) 165, 213
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 236
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 73, 84, 165, 213, 263, 286, 319, 346
CviKI_1 RGCY 8 cut(s) 73, 84, 165, 213, 263, 286, 319, 346
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 2 cut(s) 80, 85
DpnI GATC 2 cut(s) 279, 339
DpnII GATC 2 cut(s) 277, 337
EaeI YGGCCR 1 cut(s) 163
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 2 cut(s) 286, 346
Eco24I GRGCYC 2 cut(s) 288, 348
Eco53kI GAGCTC 2 cut(s) 286, 346
EcoICRI GAGCTC 2 cut(s) 286, 346
EcoT38I GRGCYC 2 cut(s) 288, 348
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 17
FaiI YATR 3 cut(s) 15, 24, 55
FatI CATG 1 cut(s) 13
FauI CCCGC 1 cut(s) 36
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 81
FriOI GRGCYC 2 cut(s) 288, 348
FspBI CTAG 2 cut(s) 141, 341
GlaI GCGC 1 cut(s) 239
HaeIII GGCC 2 cut(s) 165, 213
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 240
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 3 cut(s) 137, 198, 255
HpaII CCGG 1 cut(s) 28
HphI GGTGA 2 cut(s) 85, 93
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 68, 136
Hpy188III TCNNGA 4 cut(s) 141, 179, 281, 341
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 192, 246
HpyCH4V TGCA 2 cut(s) 112, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 210
HpyF3I CTNAG 2 cut(s) 80, 85
HpySE526I ACGT 2 cut(s) 192, 246
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 238
KpnI GGTACC 1 cut(s) 151
Kzo9I GATC 2 cut(s) 277, 337
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 5 cut(s) 41, 117, 122, 195, 228
LweI GCATC 1 cut(s) 175
MaeI CTAG 2 cut(s) 141, 341
MaeII ACGT 2 cut(s) 192, 246
MaeIII GTNAC 1 cut(s) 242
MalI GATC 2 cut(s) 279, 339
MboI GATC 2 cut(s) 277, 337
MboII GAAGA 5 cut(s) 194, 287, 347, 377, 388
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 3 cut(s) 93, 288, 348
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 3 cut(s) 289, 356, 386
MluI ACGCGT 1 cut(s) 232
MluNI TGGCCA 1 cut(s) 165
MlyI GAGTC 2 cut(s) 192, 264
MnlI CCTC 4 cut(s) 127, 137, 137, 164
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
MseI TTAA 1 cut(s) 359
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 1 cut(s) 28
MvnI CGCG 2 cut(s) 43, 234
MwoI GCNNNNNNNGC 2 cut(s) 118, 210
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 277, 337
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 293
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 69
PleI GAGTC 2 cut(s) 192, 263
PpsI GAGTC 2 cut(s) 192, 263
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 2 cut(s) 288, 348
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SacI GAGCTC 2 cut(s) 288, 348
SaqAI TTAA 1 cut(s) 359
Sau3AI GATC 2 cut(s) 277, 337
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 2 cut(s) 192, 264
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 3 cut(s) 93, 288, 348
SetI ASST 7 cut(s) 86, 156, 195, 249, 288, 321, 348
SfaNI GCATC 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 293
Sse9I AATT 3 cut(s) 289, 356, 386
SsiI CCGC 2 cut(s) 43, 202
SspMI CTAG 2 cut(s) 141, 341
SstI GAGCTC 2 cut(s) 288, 348
StyD4I CCNGG 1 cut(s) 26
TaiI ACGT 2 cut(s) 195, 249
TaqI TCGA 2 cut(s) 258, 293
TasI AATT 3 cut(s) 289, 356, 386
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 42, 389
TspRI CASTG 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 69
XbaI TCTAGA 2 cut(s) 140, 340
XcmI CCANNNNNNNNNTGG 2 cut(s) 66, 158
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 141, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.