Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008892

Physical Location & Seq

Genomic Coordinates Reverse (-)

57590479 .. 57597884

Gene Structure 7406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG410000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATCACCCATACAACCCACTTTCACAATCACCCAAAACATATAATTCCAAACAAAATACAGAATTGTTACACACTGACCTTGAAGATAAGAAGGCGAAAGTGTGGGATTGGTGGCCTTCTAATACAGCTGATTGGTCTCCGATCACGAGTCGATGATGAAAGGAGCAGCAGAGCAGAACTCCCCTTCAGCCACTGCCAAATTGGTCAAGCCGCAATCAGTCTCCTAAGCTCTGATTACGGCTTCAAGACCTCCGACAAATCGGACCCAATGTCATCTTCTAAGCCTCCAAATTTCGATCTCGAATCTACTGGACCCTCCTCCAAATCAACTCGCACCTTTAATTCCTTCAATGCGCCCTTCTCTGATGATCACAACTCAATCTTCTGTACCCCCAAAGCCCAAGATTTTGAGCAAGTTGAAGTGGATGAGTCCGGAACAAAGTGGCGAACATCATCATCTGCGGAGTCCAAGGTGGAGCGGCAGTTGAGGAGGCAGTTCTCGACAGGAGAGAAGGCAGAGAGGGTGAGGGTAGAGAGAGAGAGAGAGAGCGTGGTTTTTGTAGTGAAATGCCATCGGAGGTGGAAGATTCGACAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

200

Amino Acids

22.93

Weight (kDa)

9.53

Isoelectric Point (pI)

55.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008892)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15890
rosa_chinensis	RchiOBHm_Chr3g0470731 RchiOBHm_Chr4g0408941
rosa_laevigata	RLG00000001472 RLG00000030161 RLG00000031888
rosa_multiflora	Rmu_sc0000015.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027960 Rroxscaffold_1G00031510 Rroxscaffold_2G00110560 Rroxscaffold_2G00147590 Rroxscaffold_5G00346410 Rroxscaffold_5G00353150 Rroxscaffold_7G00186110 Rroxscaffold_7G00198750
rosa_samantha	Rh2DG222400 Rh3AG217100 Rh4AG125600 Rh4CG133700 Rh5AG093100 Rh7BG297300 Rh7CG251100 Rh7DG410000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	481
AccIII	TCCGGA	1 cut(s)	434
AciI	CCGC	3 cut(s)	213, 464, 481
AcsI	RAATTY	1 cut(s)	292
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	1 cut(s)	391
AgsI	TTSAA	4 cut(s)	85, 247, 352, 422
AhdI	GACNNNNNGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	2 cut(s)	130, 231
AluI	AGCT	2 cut(s)	130, 231
Alw26I	GTCTC	2 cut(s)	143, 227
AlwNI	CAGNNNCTG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	168
ApoI	RAATTY	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	265, 314
AsuHPI	GGTGA	2 cut(s)	23, 538
AvaII	GGWCC	2 cut(s)	265, 314
BauI	CACGAG	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	582
BceAI	ACGGC	1 cut(s)	256
BclI	TGATCA	2 cut(s)	3, 370
BcoDI	GTCTC	2 cut(s)	143, 227
BisI	GCNGC	3 cut(s)	169, 213, 482
BlsI	GCNGC	3 cut(s)	170, 214, 483
Bme18I	GGWCC	2 cut(s)	265, 314
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	265, 314
BmiI	GGNNCC	2 cut(s)	267, 316
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
Bpu10I	CCTNAGC	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bse1I	ACTGG	1 cut(s)	316
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	1 cut(s)	433
BseNI	ACTGG	1 cut(s)	316
BseRI	GAGGAG	2 cut(s)	310, 505
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	435
BsmAI	GTCTC	2 cut(s)	143, 227
BsnI	GGCC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	3, 143, 298, 370
BspACI	CCGC	3 cut(s)	213, 464, 481
BspANI	GGCC	1 cut(s)	117
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	2 cut(s)	267, 316
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	4 cut(s)	3, 143, 298, 370
BssSI	CACGAG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	227, 282
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	4 cut(s)	6, 146, 301, 373
BstMAI	GTCTC	2 cut(s)	143, 227
BstMBI	GATC	4 cut(s)	3, 143, 298, 370
BstV1I	GCAGC	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	74, 193
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	265, 314
Csp6I	GTAC	1 cut(s)	390
CviJI	RGCY	8 cut(s)	117, 130, 192, 212, 231, 243, 286, 401
CviKI_1	RGCY	8 cut(s)	117, 130, 192, 212, 231, 243, 286, 401
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	227, 282
DpnI	GATC	4 cut(s)	5, 145, 300, 372
DpnII	GATC	4 cut(s)	3, 143, 298, 370
DriI	GACNNNNNGTC	1 cut(s)	271
Eam1105I	GACNNNNNGTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	265, 314
Eco57I	CTGAAG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaiI	YATR	3 cut(s)	12, 42, 44
FbaI	TGATCA	2 cut(s)	3, 370
Fnu4HI	GCNGC	3 cut(s)	169, 213, 482
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	169, 213, 482
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	3 cut(s)	169, 213, 482
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	435
HhaI	GCGC	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	5 cut(s)	150, 305, 431, 467, 589
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	2 cut(s)	23, 538
Hpy188I	TCNGA	6 cut(s)	143, 235, 256, 265, 367, 579
Hpy188III	TCNNGA	5 cut(s)	147, 247, 302, 435, 502
HpyAV	CCTTC	6 cut(s)	87, 128, 196, 358, 370, 508
HpyF3I	CTNAG	2 cut(s)	227, 282
HspAI	GCGC	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	434
Ksp22I	TGATCA	2 cut(s)	3, 370
Kzo9I	GATC	4 cut(s)	3, 143, 298, 370
LmnI	GCTCC	2 cut(s)	165, 478
LpnPI	CCDG	3 cut(s)	297, 448, 492
Lsp1109I	GCAGC	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	4 cut(s)	5, 145, 300, 372
MbiI	CCGCTC	1 cut(s)	481
MboI	GATC	4 cut(s)	3, 143, 298, 370
MboII	GAAGA	4 cut(s)	97, 270, 376, 598
MluCI	AATT	5 cut(s)	45, 64, 201, 292, 343
MlyI	GAGTC	3 cut(s)	159, 440, 476
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	9 cut(s)	262, 297, 328, 331, 483, 486, 516, 522, 573
MroI	TCCGGA	1 cut(s)	434
MseI	TTAA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	435
NdeII	GATC	4 cut(s)	3, 143, 298, 370
NlaIV	GGNNCC	2 cut(s)	267, 316
PfeI	GAWTC	2 cut(s)	305, 589
PkrI	GCNGC	3 cut(s)	170, 214, 483
PleI	GAGTC	3 cut(s)	158, 439, 475
PpsI	GAGTC	3 cut(s)	158, 439, 475
PspN4I	GGNNCC	2 cut(s)	267, 316
PspPI	GGNCC	2 cut(s)	265, 314
PstNI	CAGNNNCTG	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	169, 213, 482
Sau3AI	GATC	4 cut(s)	3, 143, 298, 370
Sau96I	GGNCC	2 cut(s)	265, 314
SchI	GAGTC	3 cut(s)	159, 440, 476
SetI	ASST	7 cut(s)	83, 132, 233, 254, 341, 477, 584
SinI	GGWCC	2 cut(s)	265, 314
Sse9I	AATT	5 cut(s)	45, 64, 201, 292, 343
SsiI	CCGC	3 cut(s)	213, 464, 481
StyI	CCWWGG	1 cut(s)	471
TaqI	TCGA	5 cut(s)	153, 297, 303, 503, 592
TasI	AATT	5 cut(s)	45, 64, 201, 292, 343
TauI	GCSGC	2 cut(s)	215, 484
TfiI	GAWTC	2 cut(s)	305, 589
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	81, 200
TseI	GCWGC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	81, 200
VpaK11BI	GGWCC	2 cut(s)	265, 314
XapI	RAATTY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.