Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008892

Physical Location & Seq

Genomic Coordinates Forward (+)

23839082 .. 23850009

Gene Structure 10928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCTTCTTACCGGGCATAACACGCAGCATACGTGCTTGGCTATATACATACTTATGAGTGCTGCCGTGTTGGCCACGCGTTGTGGGATTAAAAGCAAACGGTTTGGTCGTGTTTGTAGACCTCTCACTTGGAAGCACGGTGACGTTTTCCTTATGTGTCTCTCCTCTTCGCAAATTCTCCCCTTCTTGACACAGGGGACAAAAACCAAGTTTGTCTTTGCAAGCCCAGCCAAATCTGCAGAGATCCTTTTCAAGTATATTTCTGCTGAGCATGTTCCTCTAAAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACCATTGCTGATCCAGTCACTAAAGTAACCATCAAACTTGGGACAAAGAAGACTCTGGAAATTATAATTTATGAGATATCAGAGAGGTTGAGAACCAACTCAAGTAGCACTTGCTATACCCATCACAATATTTGTTCAAGAAATAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

159

Amino Acids

17.84

Weight (kDa)

9.37

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008892)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15890
rosa_chinensis	RchiOBHm_Chr3g0470731 RchiOBHm_Chr4g0408941
rosa_laevigata	RLG00000001472 RLG00000030161 RLG00000031888
rosa_multiflora	Rmu_sc0000015.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027960 Rroxscaffold_1G00031510 Rroxscaffold_2G00110560 Rroxscaffold_2G00147590 Rroxscaffold_5G00346410 Rroxscaffold_5G00353150 Rroxscaffold_7G00186110 Rroxscaffold_7G00198750
rosa_samantha	Rh2DG222400 Rh3AG217100 Rh4AG125600 Rh4CG133700 Rh5AG093100 Rh7BG297300 Rh7CG251100 Rh7DG410000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	118
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	2 cut(s)	238, 335
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	174, 326
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	253, 468
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	238, 335
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	25, 62
ApoI	RAATTY	2 cut(s)	174, 326
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	152, 322
BalI	TGGCCA	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	37, 49
BccI	CCATC	2 cut(s)	368, 459
BceAI	ACGGC	1 cut(s)	50
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	26, 63
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	2 cut(s)	27, 64
Bme1390I	CCNGG	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	386
Bpu1102I	GCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	13
BsaAI	YACGTR	1 cut(s)	33
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	333
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	37, 49
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	2 cut(s)	211, 385
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	211, 385
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	243, 340
Bsp1720I	GCTNAGC	1 cut(s)	267
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	79
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	2 cut(s)	238, 335
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	243, 340
Bst4CI	ACNGT	3 cut(s)	102, 140, 311
Bst6I	CTCTTC	1 cut(s)	172
BstBAI	YACGTR	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	267
BstFNI	CGCG	1 cut(s)	79
BstKTI	GATC	2 cut(s)	246, 343
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	243, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 71, 227, 236
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	11
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	2 cut(s)	37, 49
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	223
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	41, 74, 225, 230
CviKI_1	RGCY	4 cut(s)	41, 74, 225, 230
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	245, 342
DpnII	GATC	2 cut(s)	243, 340
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco32I	GATATC	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	326
EcoRV	GATATC	1 cut(s)	408
FaeI	CATG	1 cut(s)	275
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 424, 456
FaqI	GGGAC	2 cut(s)	211, 385
FatI	CATG	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	26, 63
Fsp4HI	GCNGC	2 cut(s)	26, 63
GluI	GCNGC	2 cut(s)	26, 63
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	2 cut(s)	152, 322
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	412
Hpy188III	TCNNGA	3 cut(s)	187, 386, 468
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	102, 140, 311
HpyCH4IV	ACGT	2 cut(s)	32, 144
HpyCH4V	TGCA	3 cut(s)	221, 239, 318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 71, 227, 236
HpyF3I	CTNAG	1 cut(s)	267
HpySE526I	ACGT	2 cut(s)	32, 144
Hsp92II	CATG	1 cut(s)	275
Kzo9I	GATC	2 cut(s)	243, 340
LpnPI	CCDG	6 cut(s)	25, 179, 240, 336, 357, 371
Lsp1109I	GCAGC	2 cut(s)	37, 49
MaeII	ACGT	2 cut(s)	32, 144
MaeIII	GTNAC	3 cut(s)	140, 346, 355
MalI	GATC	2 cut(s)	245, 342
MboI	GATC	2 cut(s)	243, 340
MboII	GAAGA	2 cut(s)	159, 391
MflI	RGATCY	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	4 cut(s)	174, 326, 390, 396
MluI	ACGCGT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	5 cut(s)	132, 175, 284, 288, 408
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	1 cut(s)	12
MspR9I	CCNGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	22, 71, 227, 236
NciI	CCSGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	243, 340
NlaIII	CATG	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	140, 346
NspI	RCATGY	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 106
PkrI	GCNGC	2 cut(s)	27, 64
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Ppu21I	YACGTR	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	395
PspFI	CCCAGC	1 cut(s)	226
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	26, 63
Sau3AI	GATC	2 cut(s)	243, 340
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	6 cut(s)	35, 124, 147, 295, 419, 479
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	430
SmoI	CTYRAG	1 cut(s)	430
Sse9I	AATT	4 cut(s)	174, 326, 390, 396
SspI	AATATT	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	3 cut(s)	102, 140, 311
TaiI	ACGT	2 cut(s)	35, 147
TasI	AATT	4 cut(s)	174, 326, 390, 396
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	140, 346
TseI	GCWGC	2 cut(s)	25, 62
Tsp45I	GTSAC	2 cut(s)	140, 346
XapI	RAATTY	2 cut(s)	174, 326
XceI	RCATGY	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.