Rmu_sc0000015.1_g000031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000015.1
OG0008892
Physical Location & Seq
Forward (+)
137600 .. 139574
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000015.1_g000031.1.cds

Sequence Viewer

Length: 408 bp
ctgccaccgataccaccagcgaagcaagggaaacgccctcgcaaccaagcgaagctaaagtcacgctttagcaaaacccgtgctttctcagaacttcccagcgattgctctgctcaacctacaacgttgagtatcaattcgagggtatacctcaccgatggccatcgagttcgtgaagaagatgcgcgcgtaggactccaccaccaccgctgccactccggccgccccaagagccaccagctcgtgcgctgtgacgttgatggtgtcgaagccgtagacgatgaagatcgggagctcaattcgaaatcaaaggaggaagaaagagagctgtccatcaacgacgaatatctggagctctattcaacattaaaggaggaaggaatgaaggtctgggatttgaaaggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.46

Weight (kDa)

7.18

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 147, 276
AccII CGCG 2 cut(s) 187, 189
AciI CCGC 2 cut(s) 208, 223
AclI AACGTT 1 cut(s) 125
AcoI YGGCCR 2 cut(s) 160, 220
AgsI TTSAA 2 cut(s) 363, 400
AluBI AGCT 5 cut(s) 55, 241, 295, 328, 355
AluI AGCT 5 cut(s) 55, 241, 295, 328, 355
Alw21I GWGCWC 2 cut(s) 297, 357
AoxI GGCC 2 cut(s) 160, 220
ApeKI GCWGC 1 cut(s) 210
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 3 cut(s) 187, 189, 249
AsuHPI GGTGA 1 cut(s) 145
AsuII TTCGAA 1 cut(s) 302
BalI TGGCCA 1 cut(s) 162
BanII GRGCYC 2 cut(s) 297, 357
BauI CACGAG 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 297, 357
BbvI GCAGC 1 cut(s) 197
BccI CCATC 4 cut(s) 152, 171, 254, 341
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BglI GCCNNNNNGGC 1 cut(s) 219
BisI GCNGC 2 cut(s) 211, 223
BlsI GCNGC 2 cut(s) 212, 224
BmsI GCATC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 371
Bpu14I TTCGAA 1 cut(s) 302
BsaBI GATNNNNATC 2 cut(s) 162, 285
Bse8I GATNNNNATC 2 cut(s) 162, 285
BseJI GATNNNNATC 2 cut(s) 162, 285
BseMII CTCAG 1 cut(s) 102
BsePI GCGCGC 1 cut(s) 185
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 2 cut(s) 187, 189
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 162, 222
BsiEI CGRYCG 1 cut(s) 223
BsiHKAI GWGCWC 2 cut(s) 297, 357
BsiSI CCGG 1 cut(s) 219
BsnI GGCC 2 cut(s) 162, 222
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 297, 357
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 2 cut(s) 208, 223
BspANI GGCC 2 cut(s) 162, 222
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 2 cut(s) 187, 189
BspT104I TTCGAA 1 cut(s) 302
BssHII GCGCGC 1 cut(s) 185
BssMI GATC 1 cut(s) 286
BssNAI GTATAC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 242
Bst1107I GTATAC 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 88
BstFNI CGCG 2 cut(s) 187, 189
BstHHI GCGC 3 cut(s) 187, 189, 249
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 219, 231
BstUI CGCG 2 cut(s) 187, 189
BstV1I GCAGC 1 cut(s) 197
BstZ17I GTATAC 1 cut(s) 148
BstZI CGGCCG 1 cut(s) 220
BsuRI GGCC 2 cut(s) 162, 222
Cac8I GCNNGC 1 cut(s) 187
CfoI GCGC 3 cut(s) 187, 189, 249
CviJI RGCY 9 cut(s) 55, 162, 222, 234, 241, 272, 295, 328, 355
CviKI_1 RGCY 9 cut(s) 55, 162, 222, 234, 241, 272, 295, 328, 355
DdeI CTNAG 1 cut(s) 88
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
EaeI YGGCCR 2 cut(s) 160, 220
EagI CGGCCG 1 cut(s) 220
Ecl136II GAGCTC 2 cut(s) 295, 355
EclXI CGGCCG 1 cut(s) 220
Eco24I GRGCYC 2 cut(s) 297, 357
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 2 cut(s) 295, 355
EcoICRI GAGCTC 2 cut(s) 295, 355
EcoT38I GRGCYC 2 cut(s) 297, 357
FaiI YATR 1 cut(s) 148
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FblI GTMKAC 2 cut(s) 147, 276
Fnu4HI GCNGC 2 cut(s) 211, 223
FriOI GRGCYC 2 cut(s) 297, 357
Fsp4HI GCNGC 2 cut(s) 211, 223
GlaI GCGC 3 cut(s) 186, 188, 248
GluI GCNGC 2 cut(s) 211, 223
GsaI CCCAGC 1 cut(s) 102
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 2 cut(s) 162, 222
HapII CCGG 1 cut(s) 219
HhaI GCGC 3 cut(s) 187, 189, 249
Hin6I GCGC 3 cut(s) 185, 187, 247
HinP1I GCGC 3 cut(s) 185, 187, 247
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 148, 277
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 173, 290, 350
Hpy8I GTNNAC 2 cut(s) 148, 277
Hpy99I CGWCG 1 cut(s) 344
HpyAV CCTTC 2 cut(s) 371, 379
HpyCH4IV ACGT 2 cut(s) 125, 255
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 231
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 2 cut(s) 125, 255
HspAI GCGC 3 cut(s) 185, 187, 247
Kzo9I GATC 1 cut(s) 286
LmnI GCTCC 2 cut(s) 292, 352
LpnPI CCDG 6 cut(s) 30, 112, 232, 251, 335, 376
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 172
MaeII ACGT 2 cut(s) 125, 255
MaeIII GTNAC 2 cut(s) 60, 251
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 188, 191, 296, 329
MhlI GDGCHC 2 cut(s) 297, 357
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 2 cut(s) 136, 298
MluNI TGGCCA 1 cut(s) 162
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 5 cut(s) 48, 135, 161, 307, 367
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 368
Msp20I TGGCCA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 1 cut(s) 219
MvnI CGCG 2 cut(s) 187, 189
MwoI GCNNNNNNNGC 2 cut(s) 219, 231
NdeII GATC 1 cut(s) 286
NmuCI GTSAC 2 cut(s) 60, 251
NspV TTCGAA 1 cut(s) 302
PauI GCGCGC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 212, 224
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp124BI GAGCTC 2 cut(s) 297, 357
Psp1406I AACGTT 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 98
PteI GCGCGC 1 cut(s) 185
SacI GAGCTC 2 cut(s) 297, 357
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 211, 223
Sau3AI GATC 1 cut(s) 286
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 2 cut(s) 297, 357
SfaNI GCATC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 302
Sse9I AATT 2 cut(s) 136, 298
SsiI CCGC 2 cut(s) 208, 223
SstI GAGCTC 2 cut(s) 297, 357
TaiI ACGT 2 cut(s) 128, 258
TaqI TCGA 4 cut(s) 140, 166, 267, 302
TasI AATT 2 cut(s) 136, 298
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TseFI GTSAC 2 cut(s) 60, 251
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 2 cut(s) 60, 251
TspDTI ATGAA 2 cut(s) 297, 398
XmiI GTMKAC 2 cut(s) 147, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.