Rh2DG222400

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008892
Physical Location & Seq
Reverse (-)
21417214 .. 21430377
13164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG222400.1

Sequence Viewer

Length: 309 bp
ATGGCCTTGTTTATTATTCTCAGCAGCCGCACAATTAAGGCATATATATCTGGTGGAGTTGGAAGAAGCTGTAGAGTGAGTTGGACTCGTGCACTGAGCTTCACTGCTATTGTTCGTATTCATTGCTGGAGCTGGATTGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACGATTGCTGATCCGATCGCTGAAGTAACCATCAAACTTGGGACAAAGAAGACTCTGGAAATTATAATTTATGAGAAGTGCACCATCATATGGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

102

Amino Acids

11.57

Weight (kDa)

7.53

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccB7I CCANNNNNTGG 1 cut(s) 267
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 1 cut(s) 267
AluBI AGCT 5 cut(s) 69, 99, 132, 298, 306
AluI AGCT 5 cut(s) 69, 99, 132, 298, 306
Alw21I GWGCWC 2 cut(s) 94, 260
Alw44I GTGCAC 2 cut(s) 90, 256
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 2 cut(s) 90, 256
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 173
BaeGI GKGCMC 2 cut(s) 94, 260
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 2 cut(s) 94, 260
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 215, 269
BfmI CTRYAG 2 cut(s) 70, 277
BisI GCNGC 2 cut(s) 25, 28
BlsI GCNGC 2 cut(s) 26, 29
BpiI GAAGAC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 121
BseGI GGATG 1 cut(s) 296
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 34, 86
BseSI GKGCMC 2 cut(s) 94, 260
BseXI GCAGC 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 2 cut(s) 94, 260
BslFI GGGAC 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 267
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 94, 260
Bsp143I GATC 2 cut(s) 187, 192
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 33, 87
BspPI GGATC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 121
BssMI GATC 2 cut(s) 187, 192
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 20, 95
BstF5I GGATG 1 cut(s) 296
BstKTI GATC 2 cut(s) 190, 195
BstMBI GATC 2 cut(s) 187, 192
BstMCI CGRYCG 1 cut(s) 195
BstSFI CTRYAG 2 cut(s) 70, 277
BstSLI GKGCMC 2 cut(s) 94, 260
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 92, 102
CviJI RGCY 7 cut(s) 5, 27, 69, 99, 132, 298, 306
CviKI_1 RGCY 7 cut(s) 5, 27, 69, 99, 132, 298, 306
DdeI CTNAG 2 cut(s) 20, 95
DpnI GATC 2 cut(s) 189, 194
DpnII GATC 2 cut(s) 187, 192
Eco57I CTGAAG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 173
FaiI YATR 8 cut(s) 43, 45, 47, 242, 249, 266, 268, 301
FaqI GGGAC 1 cut(s) 232
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 25, 28
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 25, 28
GluI GCNGC 2 cut(s) 25, 28
GsuI CTGGAG 1 cut(s) 148
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 2 cut(s) 85, 229
Hpy166II GTNNAC 2 cut(s) 92, 258
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 178, 233
Hpy8I GTNNAC 2 cut(s) 92, 258
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 92, 165, 258
HpyF3I CTNAG 2 cut(s) 20, 95
Kzo9I GATC 2 cut(s) 187, 192
LmnI GCTCC 2 cut(s) 129, 303
LpnPI CCDG 5 cut(s) 36, 112, 118, 183, 218
Lsp1109I GCAGC 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 189, 194
MboI GATC 2 cut(s) 187, 192
MboII GAAGA 2 cut(s) 75, 238
MhlI GDGCHC 2 cut(s) 94, 260
MluCI AATT 4 cut(s) 33, 173, 237, 243
MlyI GAGTC 2 cut(s) 79, 223
MmeI TCCRAC 2 cut(s) 40, 62
MseI TTAA 1 cut(s) 36
NdeI CATATG 1 cut(s) 266
NdeII GATC 2 cut(s) 187, 192
PflMI CCANNNNNTGG 1 cut(s) 267
PkrI GCNGC 2 cut(s) 26, 29
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 2 cut(s) 79, 223
PpsI GAGTC 2 cut(s) 79, 223
PsiI TTATAA 1 cut(s) 242
PvuI CGATCG 1 cut(s) 195
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 25, 28
Sau3AI GATC 2 cut(s) 187, 192
SchI GAGTC 2 cut(s) 79, 223
SduI GDGCHC 2 cut(s) 94, 260
SetI ASST 5 cut(s) 71, 101, 134, 300, 308
SfcI CTRYAG 2 cut(s) 70, 277
Sse9I AATT 4 cut(s) 33, 173, 237, 243
SsiI CCGC 1 cut(s) 28
TaaI ACNGT 1 cut(s) 158
TasI AATT 4 cut(s) 33, 173, 237, 243
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 2 cut(s) 99, 109
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 2 cut(s) 99, 109
Van91I CCANNNNNTGG 1 cut(s) 267
VneI GTGCAC 2 cut(s) 90, 256
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.