Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008892

Physical Location & Seq

Genomic Coordinates Forward (+)

30706261 .. 30723597

Gene Structure 17337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGTCTCCATCTCATCCTCAACCTGTCTCCATCGAATCGCCGCAAGAGGTTTTGAGGGTAGCATCCACGTCTTCTGGGCTAGAAAAGCCCTCAAAGAACTCGAGCTATGGTGGCCGGAGTTGGGAGAACCAAGGTCGGCGAATTTGGGCGATTTTCGGCTCCACCGTGCAACTTCTCGGGCTTGTAGCGTCGTCTACGGTGCTTCCCACAACGAATCACCACCACGGACGTGTGGGGACGAGGAGAGCAGGATTCCCTTTGGAATCGAAGCAAAAGGTGGCCGAAGGAGGAAGAAATCGGCCGGCGAAGTTGAGGAGGCGAAACGGGGAAGCTGCTTGGAGTTTTGATTCTAAGCAAAATCACCGCGAAGGTAATTCCCACCTGAACCAAAATGGTGCGGCTTTAAGTTTAATTAACGAAGCAACGACCTTGTTGTTCTTGCACAGCCCACTCGAAACCATTGAGCAGATCTCTCTCTCTCTTTCTCTTTTCTATCCGTCACTCGCTATTAATGGTGCTCCGGCCACGAACCCGTCTATAGTGAGCGGTTTGACGGCGAATCCTACCAGACTTGACCTCCACCGTGATCCGTCGAAGCTTGTGGGTTCGGGCATATCTGGTGGAGTTGGAAGAAGCTGTAGAGTGAGTTTGACTCGTGCACCGAGCTTCACTGCTATTGTTGGTATTCATTGCTGGAGCTGGATTGGTGAGTACTTCTACGATTACGGCTTCAAGCTCTTCGACAAATCGGACCAAATTTCTTCTTCTTCTTTTTCAAAGCCCCCAAATTTCGACCTCGAATCTACTGGATTCTCCTACATATCGACTCGCACCTCTAATTCCTTCAATGGGTCCTTCCCGGACGATCGCAACTCAATCTTCGAGCCCCCAAAGCCCAAGATTTTGAGCGAGCCTAACGGTCGGGTGCGAGAACAAAGGTGTGACCATCGTCAAAGGTGGAGTCCACGGTGGAGCCGCGATCGAGGAGGTAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0016020 GO:0016192 GO:0031982 GO:0043226 GO:0043227 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0098657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

36.6

Weight (kDa)

10.0

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008892)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15890
rosa_chinensis	RchiOBHm_Chr3g0470731 RchiOBHm_Chr4g0408941
rosa_laevigata	RLG00000001472 RLG00000030161 RLG00000031888
rosa_multiflora	Rmu_sc0000015.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027960 Rroxscaffold_1G00031510 Rroxscaffold_2G00110560 Rroxscaffold_2G00147590 Rroxscaffold_5G00346410 Rroxscaffold_5G00353150 Rroxscaffold_7G00186110 Rroxscaffold_7G00198750
rosa_samantha	Rh2DG222400 Rh3AG217100 Rh4AG125600 Rh4CG133700 Rh5AG093100 Rh7BG297300 Rh7CG251100 Rh7DG410000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	2 cut(s)	366, 978
AciI	CCGC	5 cut(s)	41, 364, 398, 546, 976
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	4 cut(s)	112, 279, 299, 522
AcsI	RAATTY	3 cut(s)	141, 756, 787
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	121, 849
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	733, 777, 847
AjiI	CACGTC	2 cut(s)	69, 230
AleI	CACNNNNGTG	1 cut(s)	228
AluBI	AGCT	7 cut(s)	105, 332, 598, 636, 666, 699, 736
AluI	AGCT	7 cut(s)	105, 332, 598, 636, 666, 699, 736
Alw21I	GWGCWC	2 cut(s)	520, 661
Alw26I	GTCTC	2 cut(s)	9, 31
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	581
Ama87I	CYCGRG	2 cut(s)	100, 176
AoxI	GGCC	4 cut(s)	112, 279, 299, 522
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	3 cut(s)	141, 756, 787
ArsI	GACNNNNNNTTYG	2 cut(s)	946, 978
AseI	ATTAAT	1 cut(s)	510
AspS9I	GGNCC	2 cut(s)	751, 852
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	3 cut(s)	209, 353, 719
AvaI	CYCGRG	2 cut(s)	100, 176
AvaII	GGWCC	2 cut(s)	751, 852
BaeGI	GKGCMC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	888
BauI	CACGAG	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	520, 661
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	3 cut(s)	16, 38, 954
BceAI	ACGGC	2 cut(s)	570, 742
BcnI	CCSGG	1 cut(s)	860
BcoDI	GTCTC	2 cut(s)	9, 31
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	537, 637
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	4 cut(s)	41, 333, 399, 976
BlsI	GCNGC	4 cut(s)	42, 334, 400, 977
BmcAI	AGTACT	1 cut(s)	713
Bme1390I	CCNGG	1 cut(s)	860
Bme18I	GGWCC	2 cut(s)	751, 852
BmeT110I	CYCGRG	2 cut(s)	100, 176
BmgBI	CACGTC	2 cut(s)	69, 230
BmgT120I	GGNCC	2 cut(s)	751, 852
BmiI	GGNNCC	3 cut(s)	160, 853, 974
BmrFI	CCNGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	71
BoxI	GACNNNNGTC	1 cut(s)	948
BpiI	GAAGAC	1 cut(s)	63
BplI	GAGNNNNNCTC	4 cut(s)	455, 487, 637, 669
BpmI	CTGGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	130, 223, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 849
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	811
Bse3DI	GCAATG	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	130, 223, 965
BseGI	GGATG	2 cut(s)	13, 62
BseLI	CCNNNNNNNGG	2 cut(s)	121, 849
BseMI	GCAATG	1 cut(s)	688
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	3 cut(s)	256, 328, 999
BseSI	GKGCMC	1 cut(s)	661
BseX3I	CGGCCG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	366, 978
Bsh1285I	CGRYCG	4 cut(s)	302, 868, 922, 982
BshFI	GGCC	4 cut(s)	114, 281, 301, 524
BsiEI	CGRYCG	4 cut(s)	302, 868, 922, 982
BsiHKAI	GWGCWC	2 cut(s)	520, 661
BsiHKCI	CYCGRG	2 cut(s)	100, 176
BsiSI	CCGG	4 cut(s)	115, 302, 521, 860
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	121, 849
BsmAI	GTCTC	2 cut(s)	9, 31
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	4 cut(s)	114, 281, 301, 524
BsoBI	CYCGRG	2 cut(s)	100, 176
Bsp1286I	GDGCHC	3 cut(s)	520, 661, 888
Bsp143I	GATC	4 cut(s)	468, 586, 865, 979
BspACI	CCGC	5 cut(s)	41, 364, 398, 546, 976
BspANI	GGCC	4 cut(s)	114, 281, 301, 524
BspFNI	CGCG	2 cut(s)	366, 978
BspLI	GGNNCC	3 cut(s)	160, 853, 974
BspPI	GGATC	1 cut(s)	581
BspQI	GCTCTTC	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	688
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	3 cut(s)	130, 223, 965
BssMI	GATC	4 cut(s)	468, 586, 865, 979
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	654
Bst4CI	ACNGT	5 cut(s)	166, 199, 584, 920, 969
Bst6I	CTCTTC	1 cut(s)	743
BstC8I	GCNNGC	2 cut(s)	303, 911
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	223, 965
BstF5I	GGATG	2 cut(s)	13, 62
BstFNI	CGCG	2 cut(s)	366, 978
BstKTI	GATC	4 cut(s)	471, 589, 868, 982
BstMAI	GTCTC	2 cut(s)	9, 31
BstMBI	GATC	4 cut(s)	468, 586, 865, 979
BstMCI	CGRYCG	4 cut(s)	302, 868, 922, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 111, 892
BstPAI	GACNNNNGTC	1 cut(s)	948
BstSCI	CCNGG	1 cut(s)	858
BstSFI	CTRYAG	2 cut(s)	537, 637
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	2 cut(s)	366, 978
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	468
BstYI	RGATCY	1 cut(s)	468
BstZI	CGGCCG	1 cut(s)	299
BsuRI	GGCC	4 cut(s)	114, 281, 301, 524
BtgI	CCRYGG	2 cut(s)	223, 965
BtrI	CACGTC	2 cut(s)	69, 230
BtsCI	GGATG	2 cut(s)	13, 62
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	303, 911
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	751, 852
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	712
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	4 cut(s)	470, 588, 867, 981
DpnII	GATC	4 cut(s)	468, 586, 865, 979
EaeI	YGGCCR	4 cut(s)	112, 279, 299, 522
EagI	CGGCCG	1 cut(s)	299
Eam1104I	CTCTTC	1 cut(s)	743
EarI	CTCTTC	1 cut(s)	743
EclXI	CGGCCG	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	888
Eco47I	GGWCC	2 cut(s)	751, 852
Eco52I	CGGCCG	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	100, 176
EcoO109I	RGGNCCY	1 cut(s)	852
EcoT14I	CCWWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	130
FaiI	YATR	4 cut(s)	108, 539, 614, 821
FaqI	GGGAC	1 cut(s)	250
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	41, 333, 399, 976
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	888
Fsp4HI	GCNGC	4 cut(s)	41, 333, 399, 976
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	4 cut(s)	41, 333, 399, 976
GsuI	CTGGAG	1 cut(s)	715
HaeIII	GGCC	4 cut(s)	114, 281, 301, 524
HapII	CCGG	4 cut(s)	115, 302, 521, 860
HgaI	GACGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	596
HpaII	CCGG	4 cut(s)	115, 302, 521, 860
HphI	GGTGA	3 cut(s)	209, 353, 719
Hpy166II	GTNNAC	3 cut(s)	195, 659, 965
Hpy188I	TCNGA	1 cut(s)	751
Hpy8I	GTNNAC	3 cut(s)	195, 659, 965
Hpy99I	CGWCG	2 cut(s)	193, 595
HpyAV	CCTTC	4 cut(s)	278, 362, 853, 865
HpyCH4III	ACNGT	5 cut(s)	166, 199, 584, 920, 969
HpyCH4IV	ACGT	2 cut(s)	68, 229
HpyCH4V	TGCA	3 cut(s)	169, 442, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 111, 892
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	2 cut(s)	68, 229
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	468, 586, 865, 979
LguI	GCTCTTC	1 cut(s)	743
LmnI	GCTCC	4 cut(s)	164, 523, 696, 972
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	68, 229
MaeIII	GTNAC	2 cut(s)	498, 941
MalI	GATC	4 cut(s)	470, 588, 867, 981
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	4 cut(s)	468, 586, 865, 979
MboII	GAAGA	8 cut(s)	63, 303, 642, 730, 753, 756, 759, 871
MflI	RGATCY	1 cut(s)	468
MhlI	GDGCHC	3 cut(s)	520, 661, 888
MluCI	AATT	6 cut(s)	141, 373, 411, 756, 787, 838
MlyI	GAGTC	3 cut(s)	646, 820, 970
MmeI	TCCRAC	1 cut(s)	607
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	4 cut(s)	404, 410, 414, 510
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	4 cut(s)	115, 302, 521, 860
MspR9I	CCNGG	1 cut(s)	860
MvnI	CGCG	2 cut(s)	366, 978
MwoI	GCNNNNNNNGC	3 cut(s)	85, 111, 892
NaeI	GCCGGC	1 cut(s)	303
NciI	CCSGG	1 cut(s)	860
NdeII	GATC	4 cut(s)	468, 586, 865, 979
NgoMIV	GCCGGC	1 cut(s)	301
NlaIV	GGNNCC	3 cut(s)	160, 853, 974
NmuCI	GTSAC	2 cut(s)	498, 941
OliI	CACNNNNGTG	1 cut(s)	228
PacI	TTAATTAA	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	100
PciSI	GCTCTTC	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	303
PfeI	GAWTC	8 cut(s)	35, 214, 252, 263, 347, 559, 800, 810
PfoI	TCCNGGA	1 cut(s)	858
PkrI	GCNGC	4 cut(s)	42, 334, 400, 977
Ple19I	CGATCG	2 cut(s)	868, 982
PleI	GAGTC	3 cut(s)	646, 820, 969
PpsI	GAGTC	3 cut(s)	646, 820, 969
PpuMI	RGGWCCY	1 cut(s)	852
PshAI	GACNNNNGTC	1 cut(s)	948
PshBI	ATTAAT	1 cut(s)	510
Psp5II	RGGWCCY	1 cut(s)	852
PspN4I	GGNNCC	3 cut(s)	160, 853, 974
PspPI	GGNCC	2 cut(s)	751, 852
PspPPI	RGGWCCY	1 cut(s)	852
PspXI	VCTCGAGB	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	468
PvuI	CGATCG	2 cut(s)	868, 982
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	743
SaqAI	TTAA	4 cut(s)	404, 410, 414, 510
SatI	GCNGC	4 cut(s)	41, 333, 399, 976
Sau3AI	GATC	4 cut(s)	468, 586, 865, 979
Sau96I	GGNCC	2 cut(s)	751, 852
ScaI	AGTACT	1 cut(s)	713
SchI	GAGTC	3 cut(s)	646, 820, 970
ScrFI	CCNGG	1 cut(s)	860
SduI	GDGCHC	3 cut(s)	520, 661, 888
SfaNI	GCATC	1 cut(s)	71
SfcI	CTRYAG	2 cut(s)	537, 637
Sfr274I	CTCGAG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	751, 852
SlaI	CTCGAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
Sse9I	AATT	6 cut(s)	141, 373, 411, 756, 787, 838
SsiI	CCGC	5 cut(s)	41, 364, 398, 546, 976
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	858
StyI	CCWWGG	1 cut(s)	130
TaaI	ACNGT	5 cut(s)	166, 199, 584, 920, 969
TaiI	ACGT	2 cut(s)	71, 232
TasI	AATT	6 cut(s)	141, 373, 411, 756, 787, 838
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	3 cut(s)	43, 401, 978
TfiI	GAWTC	8 cut(s)	35, 214, 252, 263, 347, 559, 800, 810
Tru1I	TTAA	4 cut(s)	404, 410, 414, 510
Tru9I	TTAA	4 cut(s)	404, 410, 414, 510
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	498, 941
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	498, 941
TspDTI	ATGAA	1 cut(s)	677
TspGWI	ACGGA	3 cut(s)	240, 486, 579
TspRI	CASTG	1 cut(s)	676
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	2 cut(s)	751, 852
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	141, 756, 787
XhoI	CTCGAG	1 cut(s)	100
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.