Rroxscaffold_2G00147590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008892
Physical Location & Seq
Forward (+)
85360043 .. 85363075
3033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147590.1

Sequence Viewer

Length: 249 bp
ATGCCCTTCAAGTGGCTCCGTCCCCGCAAGAGAATCGGAGAAAATAACCCACCCTTACGGCGCAACGATCCGGATGAGTGTACCGAGGTGGAGGTGGACGGCGTTGAAGTCGTAGATGATGAAGATCGGGATCTCAATTCGAAATCAAAGGAGGAAGGAAGAGCGCTGTCCATCAACGACGAATTCGGGAGCTTAATTCGAAATCAAGGGAGGAAGGAAGGGACCCGTTGTACCGGTAATCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.43

Weight (kDa)

5.01

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 1 cut(s) 25
AclWI GGATC 2 cut(s) 62, 138
AcsI RAATTY 2 cut(s) 182, 243
AfaI GTAC 2 cut(s) 82, 232
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 12
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 2 cut(s) 10, 107
AluBI AGCT 1 cut(s) 192
AluI AGCT 1 cut(s) 192
AlwI GGATC 2 cut(s) 62, 138
Aor13HI TCCGGA 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 165
ApoI RAATTY 2 cut(s) 182, 243
AsiGI ACCGGT 1 cut(s) 233
AspLEI GCGC 2 cut(s) 63, 166
AspS9I GGNCC 1 cut(s) 222
AsuII TTCGAA 2 cut(s) 140, 199
AvaII GGWCC 1 cut(s) 222
BccI CCATC 1 cut(s) 179
BceAI ACGGC 2 cut(s) 74, 115
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BfoI RGCGCY 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 3 cut(s) 17, 223, 224
Bpu14I TTCGAA 2 cut(s) 140, 199
BsaBI GATNNNNATC 2 cut(s) 123, 129
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 2 cut(s) 70, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 233
Bse8I GATNNNNATC 2 cut(s) 123, 129
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 2 cut(s) 123, 129
BseLI CCNNNNNNNGG 1 cut(s) 12
BshTI ACCGGT 1 cut(s) 233
BsiSI CCGG 2 cut(s) 71, 234
BslFI GGGAC 2 cut(s) 6, 235
BslI CCNNNNNNNGG 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 6, 235
Bsp119I TTCGAA 2 cut(s) 140, 199
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 3 cut(s) 67, 124, 130
BspACI CCGC 1 cut(s) 25
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 17, 223, 224
BspPI GGATC 2 cut(s) 62, 138
BspQI GCTCTTC 1 cut(s) 154
BspT104I TTCGAA 2 cut(s) 140, 199
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 3 cut(s) 67, 124, 130
Bst6I CTCTTC 1 cut(s) 154
BstBI TTCGAA 2 cut(s) 140, 199
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 2 cut(s) 63, 166
BstKTI GATC 3 cut(s) 70, 127, 133
BstMBI GATC 3 cut(s) 67, 124, 130
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BtsCI GGATG 1 cut(s) 79
CfoI GCGC 2 cut(s) 63, 166
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 81, 231
CspAI ACCGGT 1 cut(s) 233
CviJI RGCY 2 cut(s) 16, 192
CviKI_1 RGCY 2 cut(s) 16, 192
CviQI GTAC 2 cut(s) 81, 231
DpnI GATC 3 cut(s) 69, 126, 132
DpnII GATC 3 cut(s) 67, 124, 130
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 222
Eco47III AGCGCT 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 222
EcoRI GAATTC 1 cut(s) 182
FaqI GGGAC 2 cut(s) 6, 235
FauI CCCGC 1 cut(s) 32
FokI GGATG 1 cut(s) 86
GlaI GCGC 2 cut(s) 62, 165
HaeII RGCGCY 1 cut(s) 167
HapII CCGG 2 cut(s) 71, 234
HhaI GCGC 2 cut(s) 63, 166
Hin6I GCGC 2 cut(s) 61, 164
HinP1I GCGC 2 cut(s) 61, 164
HinfI GANTC 1 cut(s) 33
HpaII CCGG 2 cut(s) 71, 234
Hpy166II GTNNAC 2 cut(s) 81, 97
Hpy188I TCNGA 1 cut(s) 38
Hpy188III TCNNGA 3 cut(s) 71, 128, 187
Hpy8I GTNNAC 2 cut(s) 81, 97
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 4 cut(s) 16, 149, 208, 212
HspAI GCGC 2 cut(s) 61, 164
KflI GGGWCCC 1 cut(s) 222
Kpn2I TCCGGA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 67, 124, 130
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 21, 189
LpnPI CCDG 1 cut(s) 84
MalI GATC 3 cut(s) 69, 126, 132
MboI GATC 3 cut(s) 67, 124, 130
MboII GAAGA 2 cut(s) 134, 171
MflI RGATCY 1 cut(s) 130
MluCI AATT 4 cut(s) 136, 182, 195, 243
MnlI CCTC 4 cut(s) 79, 85, 145, 204
MroI TCCGGA 1 cut(s) 70
MseI TTAA 1 cut(s) 194
MspI CCGG 2 cut(s) 71, 234
NdeII GATC 3 cut(s) 67, 124, 130
NlaIV GGNNCC 3 cut(s) 17, 223, 224
NspV TTCGAA 2 cut(s) 140, 199
PciSI GCTCTTC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 17, 223, 224
PspPI GGNCC 1 cut(s) 222
PspPPI RGGWCCY 1 cut(s) 222
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 82, 232
RsaNI GTAC 2 cut(s) 81, 231
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 1 cut(s) 194
Sau3AI GATC 3 cut(s) 67, 124, 130
Sau96I GGNCC 1 cut(s) 222
SetI ASST 3 cut(s) 90, 96, 194
SfuI TTCGAA 2 cut(s) 140, 199
SgeI CNNG 9 cut(s) 22, 36, 40, 83, 97, 140, 199, 218, 237
SinI GGWCC 1 cut(s) 222
Sse9I AATT 4 cut(s) 136, 182, 195, 243
SsiI CCGC 1 cut(s) 25
TaqI TCGA 2 cut(s) 140, 199
TasI AATT 4 cut(s) 136, 182, 195, 243
TfiI GAWTC 1 cut(s) 33
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 135
TspGWI ACGGA 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 222
XapI RAATTY 2 cut(s) 182, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.