Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008892

Physical Location & Seq

Genomic Coordinates Reverse (-)

9100096 .. 9104036

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCTTGAAGGACGAATAGCTGTTCCGGACGTGATCCCAGAACCGAGTAGCTACAAGGAGGATTTGAGGTTTAAGGCCATGAGAGACCTCCATCGGCAGAGGGAAACTGACAGTTCAACTATGAGCCAAACACAAATGACAGTCCAAACATTCTGCCCAACCTCTTCCACTTCTGGCATTGACTCCTGTGAAATCTACCCAGAATCCGTACCCCCTTCCGAGAAGCATGGTGATGGTTGTCTTGAACGTACGGAATCGCAAAGATTTTATTCTACTTATGATGAAGCACGGCCTGAATGCCCTTCAGCGAAACAACATAGGCTTGAGTGCTTGTACCTTGTAGTTGTTTATCTGCTAAAGAGCGAAATAGAGCGGTGGCAGCTCGGCACCACACCTTCTCTCCTGGAAGACATAATTCTTGATAACACAAAAGGGTACCACCTCGCCGATGGCCACCGAGTTCGTCAAGAAGATGCTCGCGTAGGACTCCGCCACCGCCACTCCGGCCGCGCTGAGAATCATCGACGCGTGCGCTGTGAAGTTGATGGCGTCGAAGCCATAGACGACGAAGATCAGGAGCTCAATTCTAAATCAAAGGAGAAAGAAAGAGAGCTGTCCATCAACAACGAAGATCTGGAGCTCTATTCGAAATTAAAGGAGGAAGGAATGAAGATTTGGGAATTGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

231

Amino Acids

26.7

Weight (kDa)

5.3

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008892)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g15890
rosa_chinensis	RchiOBHm_Chr3g0470731 RchiOBHm_Chr4g0408941
rosa_laevigata	RLG00000001472 RLG00000030161 RLG00000031888
rosa_multiflora	Rmu_sc0000015.1_g000031
rosa_roxburghii	Rroxscaffold_1G00027960 Rroxscaffold_1G00031510 Rroxscaffold_2G00110560 Rroxscaffold_2G00147590 Rroxscaffold_5G00346410 Rroxscaffold_5G00353150 Rroxscaffold_7G00186110 Rroxscaffold_7G00198750
rosa_samantha	Rh2DG222400 Rh3AG217100 Rh4AG125600 Rh4CG133700 Rh5AG093100 Rh7BG297300 Rh7CG251100 Rh7DG410000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	2 cut(s)	386, 435
AccBSI	CCGCTC	1 cut(s)	373
AccII	CGCG	3 cut(s)	480, 510, 528
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	4 cut(s)	373, 490, 496, 508
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	451, 505
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	549
AfaI	GTAC	4 cut(s)	210, 250, 335, 437
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	8, 117, 245
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	6 cut(s)	20, 51, 382, 580, 613, 640
AluI	AGCT	6 cut(s)	20, 51, 382, 580, 613, 640
Alw21I	GWGCWC	2 cut(s)	582, 642
Alw26I	GTCTC	1 cut(s)	78
AlwI	GGATC	1 cut(s)	28
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	4 cut(s)	75, 290, 451, 505
ApeKI	GCWGC	1 cut(s)	379
Asp718I	GGTACC	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	512, 534
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	453
BanI	GGYRCC	2 cut(s)	386, 435
BanII	GRGCYC	2 cut(s)	582, 642
BbsI	GAAGAC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	582, 642
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	99, 227, 443, 539, 626
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	504
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	2 cut(s)	380, 508
BlsI	GCNGC	2 cut(s)	381, 509
Bme1390I	CCNGG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	31
BmiI	GGNNCC	2 cut(s)	388, 437
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	414
BpmI	CTGGAG	1 cut(s)	656
Bpu14I	TTCGAA	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	344
BsaHI	GRCGYC	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	4 cut(s)	384, 414, 485, 515
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	504
BseX3I	CGGCCG	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	3 cut(s)	480, 510, 528
Bsh1285I	CGRYCG	1 cut(s)	508
BshFI	GGCC	4 cut(s)	77, 292, 453, 507
BshNI	GGYRCC	2 cut(s)	386, 435
BsiEI	CGRYCG	1 cut(s)	508
BsiHKAI	GWGCWC	2 cut(s)	582, 642
BsiSI	CCGG	2 cut(s)	26, 504
BsiWI	CGTACG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	78
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	4 cut(s)	77, 292, 453, 507
Bso31I	GGTCTC	1 cut(s)	78
Bsp119I	TTCGAA	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	582, 642
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	33, 571, 631
BspACI	CCGC	4 cut(s)	373, 490, 496, 508
BspANI	GGCC	4 cut(s)	77, 292, 453, 507
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	3 cut(s)	480, 510, 528
BspLI	GGNNCC	2 cut(s)	388, 437
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	386, 435
BspTNI	GGTCTC	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	373
BssMI	GATC	3 cut(s)	33, 571, 631
BssNI	GRCGYC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	113, 142
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	549
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	478, 530
BstDEI	CTNAG	1 cut(s)	513
BstFNI	CGCG	3 cut(s)	480, 510, 528
BstHHI	GCGC	2 cut(s)	512, 534
BstKTI	GATC	3 cut(s)	36, 574, 634
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	3 cut(s)	33, 571, 631
BstMCI	CGRYCG	1 cut(s)	508
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 504
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstUI	CGCG	3 cut(s)	480, 510, 528
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
BstZI	CGGCCG	1 cut(s)	505
BsuRI	GGCC	4 cut(s)	77, 292, 453, 507
BtrI	CACGTC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	478, 530
CfoI	GCGC	2 cut(s)	512, 534
CseI	GACGC	2 cut(s)	534, 538
Csp6I	GTAC	4 cut(s)	209, 249, 334, 436
CviAII	CATG	2 cut(s)	79, 227
CviQI	GTAC	4 cut(s)	209, 249, 334, 436
DdeI	CTNAG	1 cut(s)	513
DpnI	GATC	3 cut(s)	35, 573, 633
DpnII	GATC	3 cut(s)	33, 571, 631
EaeI	YGGCCR	2 cut(s)	451, 505
EagI	CGGCCG	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	2 cut(s)	580, 640
EclXI	CGGCCG	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	582, 642
Eco31I	GGTCTC	1 cut(s)	78
Eco52I	CGGCCG	1 cut(s)	505
Eco53kI	GAGCTC	2 cut(s)	580, 640
Eco57I	CTGAAG	1 cut(s)	288
EcoICRI	GAGCTC	2 cut(s)	580, 640
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	2 cut(s)	582, 642
FaeI	CATG	2 cut(s)	82, 230
FaiI	YATR	7 cut(s)	80, 122, 228, 279, 318, 413, 560
FatI	CATG	2 cut(s)	78, 226
Fnu4HI	GCNGC	2 cut(s)	380, 508
FriOI	GRGCYC	2 cut(s)	582, 642
Fsp4HI	GCNGC	2 cut(s)	380, 508
GlaI	GCGC	2 cut(s)	511, 533
GluI	GCNGC	2 cut(s)	380, 508
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	77, 292, 453, 507
HapII	CCGG	2 cut(s)	26, 504
HgaI	GACGC	2 cut(s)	534, 538
HhaI	GCGC	2 cut(s)	512, 534
Hin1I	GRCGYC	1 cut(s)	549
Hin1II	CATG	2 cut(s)	82, 230
Hin6I	GCGC	2 cut(s)	510, 532
HinP1I	GCGC	2 cut(s)	510, 532
HinfI	GANTC	5 cut(s)	182, 203, 254, 486, 517
HpaII	CCGG	2 cut(s)	26, 504
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	6 cut(s)	26, 242, 419, 467, 575, 635
Hpy99I	CGWCG	3 cut(s)	528, 554, 569
HpyAV	CCTTC	4 cut(s)	225, 312, 405, 656
HpyCH4III	ACNGT	2 cut(s)	113, 142
HpyCH4IV	ACGT	2 cut(s)	30, 247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 504
HpyF3I	CTNAG	1 cut(s)	513
HpySE526I	ACGT	2 cut(s)	30, 247
Hsp92I	GRCGYC	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	82, 230
HspAI	GCGC	2 cut(s)	510, 532
Kpn2I	TCCGGA	1 cut(s)	25
KpnI	GGTACC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	33, 571, 631
LmnI	GCTCC	2 cut(s)	577, 637
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	2 cut(s)	30, 247
MalI	GATC	3 cut(s)	35, 573, 633
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	3 cut(s)	33, 571, 631
MboII	GAAGA	6 cut(s)	156, 419, 482, 581, 641, 682
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	2 cut(s)	582, 642
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	4 cut(s)	414, 583, 650, 680
MluI	ACGCGT	1 cut(s)	526
MluNI	TGGCCA	1 cut(s)	453
MlyI	GAGTC	2 cut(s)	176, 480
MnlI	CCTC	7 cut(s)	52, 60, 93, 98, 172, 452, 652
Mox20I	TGGCCA	1 cut(s)	453
MroI	TCCGGA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	2 cut(s)	72, 653
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	453
MspI	CCGG	2 cut(s)	26, 504
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	3 cut(s)	480, 510, 528
MwoI	GCNNNNNNNGC	2 cut(s)	379, 504
NdeII	GATC	3 cut(s)	33, 571, 631
NlaIII	CATG	2 cut(s)	82, 230
NlaIV	GGNNCC	2 cut(s)	388, 437
NmeAIII	GCCGAG	1 cut(s)	363
NspV	TTCGAA	1 cut(s)	647
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	203, 254, 517
Pfl23II	CGTACG	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	2 cut(s)	381, 509
PleI	GAGTC	2 cut(s)	176, 480
PpsI	GAGTC	2 cut(s)	176, 480
Psp124BI	GAGCTC	2 cut(s)	582, 642
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspLI	CGTACG	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	388, 437
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	4 cut(s)	210, 250, 335, 437
RsaNI	GTAC	4 cut(s)	209, 249, 334, 436
RseI	CAYNNNNRTG	1 cut(s)	231
SacI	GAGCTC	2 cut(s)	582, 642
SaqAI	TTAA	2 cut(s)	72, 653
SatI	GCNGC	2 cut(s)	380, 508
Sau3AI	GATC	3 cut(s)	33, 571, 631
SchI	GAGTC	2 cut(s)	176, 480
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	582, 642
SfaNI	GCATC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	4 cut(s)	414, 583, 650, 680
SsiI	CCGC	4 cut(s)	373, 490, 496, 508
SstI	GAGCTC	2 cut(s)	582, 642
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	113, 142
TaiI	ACGT	2 cut(s)	33, 250
TaqI	TCGA	3 cut(s)	523, 552, 647
TasI	AATT	4 cut(s)	414, 583, 650, 680
TauI	GCSGC	1 cut(s)	510
TfiI	GAWTC	3 cut(s)	203, 254, 517
Tru1I	TTAA	2 cut(s)	72, 653
Tru9I	TTAA	2 cut(s)	72, 653
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	2 cut(s)	297, 683
TspGWI	ACGGA	2 cut(s)	196, 266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.