Rh4AG125600

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0008892
Physical Location & Seq
Forward (+)
27219048 .. 27219898
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG125600.1

Sequence Viewer

Length: 321 bp
ATGCATGGTTGGTATTTTGCATTCTACATATTGATAAGCCCCTTCTTGACACAGGGGACCAAAACCAAGTTTGTCTTTGCAAGCCCAGCCAAATCTGCAGAGATCCTTTTCAAGTACATTTCTGCTAAGCATGTTCCTATACAATATGGAGGTTTGAGTGTGGATTACTGTGAGTGCAACCCAGAATTCACGATTGCTGATCCGGTCGCTGAAGTAACCATCAAACTTGGGACAAAGAAGACTCTGAAAATTATAATTTATGAGAAGTGCACCATCATATTGGAACTCTGTAGTTGGGTGGGATGTGAGCTATGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

7.6

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 7 - 51 4.2e-06 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 254
AclWI GGATC 2 cut(s) 97, 194
AcsI RAATTY 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 231
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 2 cut(s) 310, 318
AluI AGCT 2 cut(s) 310, 318
Alw21I GWGCWC 1 cut(s) 272
Alw44I GTGCAC 1 cut(s) 268
AlwI GGATC 2 cut(s) 97, 194
ApaLI GTGCAC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 57
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 272
BccI CCATC 2 cut(s) 227, 281
BfmI CTRYAG 2 cut(s) 96, 289
BlpI GCTNAGC 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 58
BpiI GAAGAC 1 cut(s) 245
Bpu1102I GCTNAGC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 202
BseGI GGATG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 272
BseYI CCCAGC 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 2 cut(s) 70, 244
BsmFI GGGAC 2 cut(s) 70, 244
BsmI GAATGC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 102, 199
Bsp1720I GCTNAGC 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 2 cut(s) 97, 194
BssMI GATC 2 cut(s) 102, 199
Bst4CI ACNGT 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 2 cut(s) 105, 202
BstMBI GATC 2 cut(s) 102, 199
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNSI RCATGY 1 cut(s) 134
BstSFI CTRYAG 2 cut(s) 96, 289
BstSLI GKGCMC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 280
BstYI RGATCY 1 cut(s) 102
BtsCI GGATG 1 cut(s) 308
Cac8I GCNNGC 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 5, 131
CviJI RGCY 5 cut(s) 39, 84, 89, 310, 318
CviKI_1 RGCY 5 cut(s) 39, 84, 89, 310, 318
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 126
DpnI GATC 2 cut(s) 104, 201
DpnII GATC 2 cut(s) 102, 199
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 185
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 134
FaiI YATR 9 cut(s) 6, 29, 132, 140, 147, 254, 261, 278, 313
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FaqI GGGAC 2 cut(s) 70, 244
FatI CATG 2 cut(s) 4, 130
FokI GGATG 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 89
HapII CCGG 1 cut(s) 203
Hin1II CATG 2 cut(s) 8, 134
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 270
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 2 cut(s) 46, 190
Hpy8I GTNNAC 1 cut(s) 270
HpyAV CCTTC 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 6 cut(s) 4, 20, 80, 98, 177, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 2 cut(s) 8, 134
Kzo9I GATC 2 cut(s) 102, 199
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 4 cut(s) 38, 99, 195, 216
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 104, 201
MboI GATC 2 cut(s) 102, 199
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 102
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 3 cut(s) 185, 249, 255
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 6
MspI CCGG 1 cut(s) 203
Mva1269I GAATGC 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NdeII GATC 2 cut(s) 102, 199
NlaIII CATG 2 cut(s) 8, 134
NlaIV GGNNCC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 134
PctI GAATGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PsiI TTATAA 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 58
PspPI GGNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
Sau3AI GATC 2 cut(s) 102, 199
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 272
SetI ASST 3 cut(s) 154, 312, 320
SfcI CTRYAG 2 cut(s) 96, 289
SinI GGWCC 1 cut(s) 57
Sse9I AATT 3 cut(s) 185, 249, 255
TaaI ACNGT 1 cut(s) 170
TasI AATT 3 cut(s) 185, 249, 255
TatI WGTACW 1 cut(s) 114
VneI GTGCAC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 134
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.