RLG00000002428

DNA polymerase III, delta subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008140
Physical Location & Seq
Forward (+)
34108941 .. 34112427
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002428

Sequence Viewer

Length: 2766 bp
ATGGCTACTGAAGCAATGAAAGTATTGAGAAAGCAAGCCAAGAATACTGAGAAGAGACGTTCAAGCTCAAGCTCCATAGTAGGAGGACACTTCAACGATCCACATCAACCTCATTTACTGTGTGCAAACCAATTCTGCCAGTGTGAATCTCAGTCATTGAGTAGCAAGCTCACATATAATCCTGCTTCATCGAGTTCAATAGCTCCAACCCAGCAGCATTCGGAGCATCTGCAGCAGTCATTTCTTGCTTCATCATCCACAAATCAGCAGACTTCAAGAGTGAAAGTGAAATCCCAACACAAAGAGGGGATTGTATCTTGTCAGTCGTCCAAAACGCGCAGAGCCACTAGACGAATAAAGGTAATCAGTTTATTTAAAAGGTTGAATGATGGAACAAAGCGAAGCAACTTTCTGAGGGGCAATTGTCAAGAATACAAATCAAGGGAAGAAAATGATCATACCAGCCAGGACAAAGTATTTCACTTCGGCATAAATTCTGTTGAATTGAATAGCAGAGCCCAATGGAGCCTCTATACAGATAACTGCTACTTGAACCAAAATCTCAGCAACAAGTACCAACCACGGCATCTCAAGGACATTGCTGGCCATGAAATGGTTATTAAGGCCATAACCAATGCAATTCAGCAGAATAAGATTGCACCGCTTTATCTTTTCTATGGTGCAAGAGGCTCCGGGAAGACATCTACTGCTAGAATATTAGCACTGGCCTTGAACTGTGAATCCAGCTCATTTATCAAACCGTGCTGGAAATGCCAAGGATGCTCCAGAAGCCTTTCTATTATGGAGTTGTGTTCTGGAAGTACAGTTGCTGGATTCAAAATGATTAGGAAACTCCTTCAAAGTATATCATCTTTGCAAACAACACCAGGATTTAAGGTATTTATCCTTGAAGAGTGCGAATCGTTTAGTACAGAAGCATGGGAAGAACTTTCAGGCATAGCAAATGGAGCTTACAATGCTGGTGTGGTAATCATCCTTATCACTACAAATGCAGACATGGTGCCTAGAACCATATCATCAAGATGTCAGAAATTCTTCTTTCCCAAACTCAGAGACACTGATATCATGCTCAAGTTGACTAGAATTGCAGCCCAGGAGGGTATAAGGATTGAAAAAGAAGCAATCAAACTGGTTACTACCAAAGCACAAGGATCTTTGCGAGAAGCTGAAAACATATTAGACCAGCTGATATTACTGGGACCAAAGATAACAAGTTCCATGGCACAACAGCTTGTAGGTCTTGTTCCGCATGATAAGCTCAATGAATTGCTCGCAATGGCACTTTCCGGTGACACTATGCAAACCCTGAGATGTGCAAGGCAGCTGATTGGAACTGGTATTGAACCACAAATGTTTGTATCACAATTGGTTTCGCACATCACCAACATGCTTTTCAGTGAGGCTGATGCTGTTCCTGAAACCTCTTCTTCTACTCACTTGTCAACAGATAAGGAACTTCTGCAAGGAGGATCAGAGCACAAAAATGATCAATCAGTGGGACTGTGTTGCGCCTTACAAATATTAGCTGCAGTAGAGATGCAACCCAGGTCCTCGACTGACCATACCTTGCAGATATTTAATGCTCTTTTACAAATTGCTTCTAGAGATGCTTCCAGCAAAAGATCTTCCGGGCCTGCCCTATCCCCAGATTACAATTCCAATGCAGAAATGCAGTTGCATAGCCTAACCCACAGCAGGTCCTCAGTGAACCACATTGCCATCAGCAACACTGCTGAGCAACAAGAGATGGACAATACTAAACAAAAGTCTACCATCAAAAGCATTTCAAAACAGACAAATTGCAGAGACAAGGCAGTTGATGGAGAGACCCACTTTACTTGCATCAGTGAAATGGAAGAAATTTGGCTAAACATGTTGGGCAGGATGCATAGTTCATATTTGAAAGACTTTTTGCGCCACAAAGTGAAGCTTGCATCATTAACTATAACTAGTGCCAATGCAATTTTGCATTTGATGTTCAAAAGACCAGAAGACAAGCAGATTGCTCAGATGTCTGAAGAACACCTATCGGAGACTCTAGAGAGCGCTATAGGATGCCCAATTATTCTACATATGAGCCTAGAGCCTGTGGACTTGAAAATCTCAGACGAAAACTCGGCCTCCAGTTATCAGACACAGCTAGTAGAGAGCAGTCATTTTAACCATGGAACAACATTTGTTCCTGAACCTGTTTATGAAGTAGATCTTGGAGCTGCAGTGCAACACAGTGGTCAGATGAAAGCCAACTCCTTAAACAGAGAGCAACTTGAGGCCAAGAAAGCTGATGGCTGCAAACTGATATCTAAAAGACAAGACAAATACAGTACAAGCATAAAGGAGGAATCCATTGCTCAGCCACCGGAGATAAGACCCTTCAATGATCTTTTAAGACAAGAGGACCAAGAGGATGCATCTATTGATTCGATAACAGATTCTTTGAGTTCTCTGATGGACACAACTCGTACAAGGAGAACACAAAGGGCCCAGAAGAAGTGGTTGTCTGTATCCTCTGCTCAACGAAGTGACGCAAGCATTGAACCATACAGTCAAGATATATCGTTCGACAATGCAAAGACAAAGCAAAAGAGAAGTGCAAAATCCCAAAAGCTTCCAAAAGCATTCTTTAAGGTTAAAGAACTTCATGATTCTCAAGATGATCCAAGAAACAGAGGCCTGCACCGCAGCTGGAGTTGCAAAGATATATCCTGTCAGCAGAAGTCAAAAACAAAAAATCACAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol3_delta2 DNA_pol3_gamma3

Protein Analysis

922

Amino Acids

102.81

Weight (kDa)

8.95

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol3_delta2 PF13177 203 - 357 2.3e-19 DNA polymerase III, delta subunit
AAA PF00004 223 - 354 8.7e-08 ATPase family associated with various cellular activities (AAA)
DNAX_ATPase_lid PF22608 362 - 407 9.4e-08 DNA polymerase III clamp loader subunit, ATPase lid domain
DnaA_N-like_STI PF23007 623 - 701 6.9e-18 STICHEL, DnaA_N-like alpha-beta domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1707
AccB1I GGYRCC 1 cut(s) 1021
AccB7I CCANNNNNTGG 1 cut(s) 613
AccI GTMKAC 1 cut(s) 1790
AccII CGCG 1 cut(s) 337
AciI CCGC 3 cut(s) 662, 1268, 2701
AclWI GGATC 4 cut(s) 92, 1180, 1498, 2672
AcoI YGGCCR 1 cut(s) 604
AcsI RAATTY 3 cut(s) 493, 1052, 1881
AcuI CTGAAG 2 cut(s) 30, 2058
AdeI CACNNNGTG 1 cut(s) 1945
AfaI GTAC 5 cut(s) 575, 823, 931, 2347, 2485
AfeI AGCGCT 1 cut(s) 2068
AfiI CCNNNNNNNGG 2 cut(s) 613, 1716
AflIII ACRYGT 1 cut(s) 1893
AhlI ACTAGT 1 cut(s) 1970
AjnI CCWGG 4 cut(s) 465, 886, 1113, 1565
AjuI GAANNNNNNNTTGG 4 cut(s) 1397, 1429, 2211, 2243
AloI GAACNNNNNNTCC 4 cut(s) 725, 757, 1897, 1929
Alw21I GWGCWC 1 cut(s) 1500
Alw26I GTCTC 5 cut(s) 49, 1068, 1821, 1841, 2048
AlwI GGATC 4 cut(s) 92, 1180, 1498, 2672
AlwNI CAGNNNCTG 1 cut(s) 830
Aor51HI AGCGCT 1 cut(s) 2068
AoxI GGCC 8 cut(s) 604, 624, 726, 1652, 2139, 2292, 2502, 2692
ApaI GGGCCC 1 cut(s) 2506
ApeKI GCWGC 8 cut(s) 214, 232, 1109, 1342, 1547, 2234, 2310, 2703
ApoI RAATTY 3 cut(s) 493, 1052, 1881
Asp700I GAANNNNTTC 2 cut(s) 793, 1055
AspLEI GCGC 4 cut(s) 339, 1532, 1938, 2069
AspS9I GGNCC 7 cut(s) 1220, 1569, 1652, 1719, 2419, 2502, 2503
AsuC2I CCSGG 2 cut(s) 694, 1651
AsuHPI GGTGA 2 cut(s) 1322, 1393
AvaII GGWCC 4 cut(s) 1220, 1569, 1719, 2419
BaeGI GKGCMC 1 cut(s) 2506
BalI TGGCCA 1 cut(s) 606
BanI GGYRCC 1 cut(s) 1021
BanII GRGCYC 2 cut(s) 520, 2506
BbsI GAAGAC 2 cut(s) 704, 2019
Bbv12I GWGCWC 1 cut(s) 1500
BbvI GCAGC 8 cut(s) 226, 244, 1121, 1354, 1534, 2221, 2297, 2715
BccI CCATC 7 cut(s) 383, 1748, 1762, 1802, 1835, 2300, 2464
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 4 cut(s) 467, 888, 1115, 1567
BciVI GTATCC 1 cut(s) 2536
BclI TGATCA 2 cut(s) 454, 1507
BcnI CCSGG 2 cut(s) 694, 1651
BcoDI GTCTC 5 cut(s) 49, 1068, 1821, 1841, 2048
BcuI ACTAGT 1 cut(s) 1970
BfaI CTAG 9 cut(s) 348, 711, 1026, 1101, 1623, 1971, 2060, 2102, 2162
BfmI CTRYAG 4 cut(s) 230, 1548, 2070, 2235
BfoI RGCGCY 1 cut(s) 2070
BfuAI ACCTGC 1 cut(s) 1707
BfuI GTATCC 1 cut(s) 2536
BglII AGATCT 2 cut(s) 1643, 2224
BisI GCNGC 8 cut(s) 215, 233, 1110, 1343, 1548, 2235, 2311, 2704
BlpI GCTNAGC 2 cut(s) 1755, 2373
BlsI GCNGC 8 cut(s) 216, 234, 1111, 1344, 1549, 2236, 2312, 2705
Bme1390I CCNGG 6 cut(s) 467, 694, 888, 1115, 1567, 1651
Bme18I GGWCC 4 cut(s) 1220, 1569, 1719, 2419
BmgT120I GGNCC 7 cut(s) 1220, 1569, 1652, 1719, 2419, 2502, 2503
BmiI GGNNCC 5 cut(s) 527, 691, 1023, 1221, 2504
BmrFI CCNGG 6 cut(s) 467, 694, 888, 1115, 1567, 1651
BmrI ACTGGG 1 cut(s) 1226
BmuI ACTGGG 1 cut(s) 1226
BpiI GAAGAC 2 cut(s) 704, 2019
BpmI CTGGAG 3 cut(s) 769, 2128, 2728
Bpu1102I GCTNAGC 2 cut(s) 1755, 2373
BpuEI CTTGAG 5 cut(s) 52, 575, 1076, 2309, 2655
BpuMI CCSGG 2 cut(s) 694, 1651
BsaBI GATNNNNATC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 1841
BsaJI CCNNGG 6 cut(s) 581, 775, 1113, 1239, 1565, 2185
BsaWI WCCGGW 2 cut(s) 1307, 2380
BsaXI ACNNNNNCTCC 4 cut(s) 2126, 2156, 2223, 2253
Bsc4I CCNNNNNNNGG 2 cut(s) 613, 1716
Bse1I ACTGG 6 cut(s) 139, 729, 1155, 1221, 1360, 2145
Bse3DI GCAATG 5 cut(s) 21, 597, 1302, 1734, 2367
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 4 cut(s) 467, 888, 1115, 1567
BseDI CCNNGG 6 cut(s) 581, 775, 1113, 1239, 1565, 2185
BseGI GGATG 6 cut(s) 254, 785, 993, 1911, 2081, 2434
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 613, 1716
BseMI GCAATG 5 cut(s) 21, 597, 1302, 1734, 2367
BseNI ACTGG 6 cut(s) 139, 729, 1155, 1221, 1360, 2145
BseSI GKGCMC 1 cut(s) 2506
BseXI GCAGC 8 cut(s) 226, 244, 1121, 1354, 1534, 2221, 2297, 2715
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 2681
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 8 cut(s) 606, 626, 728, 1654, 2141, 2294, 2504, 2694
BshNI GGYRCC 1 cut(s) 1021
BsiHKAI GWGCWC 1 cut(s) 1500
BsiSI CCGG 4 cut(s) 693, 1308, 1650, 2381
BslFI GGGAC 2 cut(s) 1233, 1533
BslI CCNNNNNNNGG 2 cut(s) 613, 1716
BsmAI GTCTC 5 cut(s) 49, 1068, 1821, 1841, 2048
BsmBI CGTCTC 1 cut(s) 49
BsmFI GGGAC 2 cut(s) 1233, 1533
BsmI GAATGC 2 cut(s) 217, 2639
BsnI GGCC 8 cut(s) 606, 626, 728, 1654, 2141, 2294, 2504, 2694
Bso31I GGTCTC 1 cut(s) 1841
Bsp120I GGGCCC 1 cut(s) 2502
Bsp1286I GDGCHC 3 cut(s) 520, 1500, 2506
Bsp143I GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
Bsp1720I GCTNAGC 2 cut(s) 1755, 2373
Bsp19I CCATGG 2 cut(s) 1239, 2185
BspACI CCGC 3 cut(s) 662, 1268, 2701
BspANI GGCC 8 cut(s) 606, 626, 728, 1654, 2141, 2294, 2504, 2694
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 2662
BspLI GGNNCC 5 cut(s) 527, 691, 1023, 1221, 2504
BspMAI CTGCAG 3 cut(s) 234, 1552, 2239
BspMI ACCTGC 1 cut(s) 1707
BspPI GGATC 4 cut(s) 92, 1180, 1498, 2672
BspT107I GGYRCC 1 cut(s) 1021
BspTNI GGTCTC 1 cut(s) 1841
BsrDI GCAATG 5 cut(s) 21, 597, 1302, 1734, 2367
BsrI ACTGG 6 cut(s) 139, 729, 1155, 1221, 1360, 2145
BssECI CCNNGG 6 cut(s) 581, 775, 1113, 1239, 1565, 2185
BssMI GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
BssT1I CCWWGG 3 cut(s) 775, 1239, 2185
Bst2UI CCWGG 4 cut(s) 467, 888, 1115, 1567
Bst4CI ACNGT 8 cut(s) 120, 737, 762, 826, 1524, 2249, 2345, 2567
Bst6I CTCTTC 3 cut(s) 47, 906, 1450
BstC8I GCNNGC 8 cut(s) 36, 167, 604, 1293, 1656, 1953, 2551, 2696
BstDSI CCRYGG 3 cut(s) 581, 1239, 2185
BstF5I GGATG 6 cut(s) 254, 785, 993, 1911, 2081, 2434
BstFNI CGCG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 2070
BstHHI GCGC 4 cut(s) 339, 1532, 1938, 2069
BstKTI GATC 9 cut(s) 100, 457, 1175, 1493, 1510, 1646, 2227, 2404, 2680
BstMAI GTCTC 5 cut(s) 49, 1068, 1821, 1841, 2048
BstMBI GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
BstNI CCWGG 4 cut(s) 467, 888, 1115, 1567
BstNSI RCATGY 2 cut(s) 1411, 1897
BstSCI CCNGG 6 cut(s) 465, 692, 886, 1113, 1565, 1649
BstSFI CTRYAG 4 cut(s) 230, 1548, 2070, 2235
BstSLI GKGCMC 1 cut(s) 2506
BstUI CGCG 1 cut(s) 337
BstV1I GCAGC 8 cut(s) 226, 244, 1121, 1354, 1534, 2221, 2297, 2715
BstV2I GAAGAC 2 cut(s) 704, 2019
BstX2I RGATCY 3 cut(s) 1172, 1643, 2224
BstYI RGATCY 3 cut(s) 1172, 1643, 2224
BsuI GTATCC 1 cut(s) 2536
BsuRI GGCC 8 cut(s) 606, 626, 728, 1654, 2141, 2294, 2504, 2694
BtgI CCRYGG 3 cut(s) 581, 1239, 2185
BtsCI GGATG 6 cut(s) 254, 785, 993, 1911, 2081, 2434
BtsI GCAGTG 2 cut(s) 1749, 2244
BveI ACCTGC 1 cut(s) 1707
Cac8I GCNNGC 8 cut(s) 36, 167, 604, 1293, 1656, 1953, 2551, 2696
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 1 cut(s) 2662
CfoI GCGC 4 cut(s) 339, 1532, 1938, 2069
Cfr13I GGNCC 7 cut(s) 1220, 1569, 1652, 1719, 2419, 2502, 2503
CseI GACGC 1 cut(s) 2555
Csp6I GTAC 5 cut(s) 574, 822, 930, 2346, 2484
CspCI CAANNNNNGTGG 2 cut(s) 1841, 1876
CviQI GTAC 5 cut(s) 574, 822, 930, 2346, 2484
DpnI GATC 9 cut(s) 99, 456, 1174, 1492, 1509, 1645, 2226, 2403, 2679
DpnII GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
DraI TTTAAA 1 cut(s) 376
DraIII CACNNNGTG 1 cut(s) 1945
EaeI YGGCCR 1 cut(s) 604
Eam1104I CTCTTC 3 cut(s) 47, 906, 1450
EarI CTCTTC 3 cut(s) 47, 906, 1450
Eco130I CCWWGG 3 cut(s) 775, 1239, 2185
Eco147I AGGCCT 1 cut(s) 2694
Eco24I GRGCYC 2 cut(s) 520, 2506
Eco31I GGTCTC 1 cut(s) 1841
Eco32I GATATC 2 cut(s) 1084, 2322
Eco47I GGWCC 4 cut(s) 1220, 1569, 1719, 2419
Eco47III AGCGCT 1 cut(s) 2068
Eco57I CTGAAG 2 cut(s) 30, 2058
EcoO109I RGGNCCY 3 cut(s) 1569, 1719, 2502
EcoRII CCWGG 4 cut(s) 465, 886, 1113, 1565
EcoRV GATATC 2 cut(s) 1084, 2322
EcoT14I CCWWGG 3 cut(s) 775, 1239, 2185
EcoT22I ATGCAT 2 cut(s) 1911, 2434
EcoT38I GRGCYC 2 cut(s) 520, 2506
ErhI CCWWGG 3 cut(s) 775, 1239, 2185
Esp3I CGTCTC 1 cut(s) 49
FalI AAGNNNNNCTT 4 cut(s) 1935, 1967, 2211, 2243
FaqI GGGAC 2 cut(s) 1233, 1533
FauNDI CATATG 1 cut(s) 2094
FbaI TGATCA 2 cut(s) 454, 1507
FblI GTMKAC 1 cut(s) 1790
Fnu4HI GCNGC 8 cut(s) 215, 233, 1110, 1343, 1548, 2235, 2311, 2704
FokI GGATG 6 cut(s) 241, 792, 980, 1918, 2088, 2441
FriOI GRGCYC 2 cut(s) 520, 2506
Fsp4HI GCNGC 8 cut(s) 215, 233, 1110, 1343, 1548, 2235, 2311, 2704
FspBI CTAG 9 cut(s) 348, 711, 1026, 1101, 1623, 1971, 2060, 2102, 2162
GlaI GCGC 4 cut(s) 338, 1531, 1937, 2068
GluI GCNGC 8 cut(s) 215, 233, 1110, 1343, 1548, 2235, 2311, 2704
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 3 cut(s) 769, 2128, 2728
HaeII RGCGCY 1 cut(s) 2070
HaeIII GGCC 8 cut(s) 606, 626, 728, 1654, 2141, 2294, 2504, 2694
HapII CCGG 4 cut(s) 693, 1308, 1650, 2381
HgaI GACGC 1 cut(s) 2555
HhaI GCGC 4 cut(s) 339, 1532, 1938, 2069
Hin6I GCGC 4 cut(s) 337, 1530, 1936, 2067
HinP1I GCGC 4 cut(s) 337, 1530, 1936, 2067
HincII GTYRAC 2 cut(s) 1098, 1464
HindII GTYRAC 2 cut(s) 1098, 1464
HindIII AAGCTT 2 cut(s) 1949, 2627
HinfI GANTC 9 cut(s) 146, 740, 834, 920, 2056, 2363, 2441, 2453, 2666
HpaII CCGG 4 cut(s) 693, 1308, 1650, 2381
HphI GGTGA 2 cut(s) 1322, 1393
Hpy166II GTNNAC 5 cut(s) 1098, 1464, 1729, 1791, 2113
Hpy8I GTNNAC 5 cut(s) 1098, 1464, 1729, 1791, 2113
HpyAV CCTTC 2 cut(s) 866, 2404
HpyCH4III ACNGT 8 cut(s) 120, 737, 762, 826, 1524, 2249, 2345, 2567
HpyCH4IV ACGT 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 58
HspAI GCGC 4 cut(s) 337, 1530, 1936, 2067
Ksp22I TGATCA 2 cut(s) 454, 1507
Kzo9I GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
LmnI GCTCC 8 cut(s) 77, 208, 223, 525, 695, 788, 968, 2231
Lsp1109I GCAGC 8 cut(s) 226, 244, 1121, 1354, 1534, 2221, 2297, 2715
MaeI CTAG 9 cut(s) 348, 711, 1026, 1101, 1623, 1971, 2060, 2102, 2162
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 1153, 1310, 2543
MalI GATC 9 cut(s) 99, 456, 1174, 1492, 1509, 1645, 2226, 2403, 2679
MboI GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
MfeI CAATTG 2 cut(s) 421, 1385
MflI RGATCY 3 cut(s) 1172, 1643, 2224
MhlI GDGCHC 3 cut(s) 520, 1500, 2506
MlsI TGGCCA 1 cut(s) 606
MluNI TGGCCA 1 cut(s) 606
MlyI GAGTC 1 cut(s) 2050
MmeI TCCRAC 1 cut(s) 230
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 2 cut(s) 1911, 2434
MroXI GAANNNNTTC 2 cut(s) 793, 1055
MscI TGGCCA 1 cut(s) 606
MslI CAYNNNNRTG 3 cut(s) 1042, 1406, 1503
Msp20I TGGCCA 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 1207, 1345, 2706
MspI CCGG 4 cut(s) 693, 1308, 1650, 2381
MspR9I CCNGG 6 cut(s) 467, 694, 888, 1115, 1567, 1651
MunI CAATTG 2 cut(s) 421, 1385
Mva1269I GAATGC 2 cut(s) 217, 2639
MvaI CCWGG 4 cut(s) 467, 888, 1115, 1567
MvnI CGCG 1 cut(s) 337
NciI CCSGG 2 cut(s) 694, 1651
NcoI CCATGG 2 cut(s) 1239, 2185
NdeI CATATG 1 cut(s) 2094
NdeII GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
NlaIV GGNNCC 5 cut(s) 527, 691, 1023, 1221, 2504
NmeAIII GCCGAG 1 cut(s) 2117
NmuCI GTSAC 2 cut(s) 1310, 2543
NsiI ATGCAT 2 cut(s) 1911, 2434
NspI RCATGY 2 cut(s) 1411, 1897
PagI TCATGA 1 cut(s) 2662
PceI AGGCCT 1 cut(s) 2694
PciI ACATGT 1 cut(s) 1893
PctI GAATGC 2 cut(s) 217, 2639
PdmI GAANNNNTTC 2 cut(s) 793, 1055
PfeI GAWTC 8 cut(s) 146, 740, 834, 920, 2363, 2441, 2453, 2666
PflMI CCANNNNNTGG 1 cut(s) 613
PfoI TCCNGGA 1 cut(s) 692
PkrI GCNGC 8 cut(s) 216, 234, 1111, 1344, 1549, 2236, 2312, 2705
PleI GAGTC 1 cut(s) 2050
PpsI GAGTC 1 cut(s) 2050
PpuMI RGGWCCY 2 cut(s) 1569, 1719
PscI ACATGT 1 cut(s) 1893
Psp5II RGGWCCY 2 cut(s) 1569, 1719
Psp6I CCWGG 4 cut(s) 465, 886, 1113, 1565
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 4 cut(s) 465, 886, 1113, 1565
PspN4I GGNNCC 5 cut(s) 527, 691, 1023, 1221, 2504
PspOMI GGGCCC 1 cut(s) 2502
PspPI GGNCC 7 cut(s) 1220, 1569, 1652, 1719, 2419, 2502, 2503
PspPPI RGGWCCY 2 cut(s) 1569, 1719
PsrI GAACNNNNNNTAC 2 cut(s) 1248, 1280
PstI CTGCAG 3 cut(s) 234, 1552, 2239
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 3 cut(s) 1172, 1643, 2224
PvuII CAGCTG 3 cut(s) 1207, 1345, 2706
RsaI GTAC 5 cut(s) 575, 823, 931, 2347, 2485
RsaNI GTAC 5 cut(s) 574, 822, 930, 2346, 2484
RseI CAYNNNNRTG 3 cut(s) 1042, 1406, 1503
SatI GCNGC 8 cut(s) 215, 233, 1110, 1343, 1548, 2235, 2311, 2704
Sau3AI GATC 9 cut(s) 97, 454, 1172, 1490, 1507, 1643, 2224, 2401, 2677
Sau96I GGNCC 7 cut(s) 1220, 1569, 1652, 1719, 2419, 2502, 2503
SchI GAGTC 1 cut(s) 2050
ScrFI CCNGG 6 cut(s) 467, 694, 888, 1115, 1567, 1651
SduI GDGCHC 3 cut(s) 520, 1500, 2506
SfcI CTRYAG 4 cut(s) 230, 1548, 2070, 2235
SinI GGWCC 4 cut(s) 1220, 1569, 1719, 2419
SmiMI CAYNNNNRTG 3 cut(s) 1042, 1406, 1503
SmlI CTYRAG 5 cut(s) 67, 590, 1091, 2288, 2670
SmoI CTYRAG 5 cut(s) 67, 590, 1091, 2288, 2670
SpeI ACTAGT 1 cut(s) 1970
SseBI AGGCCT 1 cut(s) 2694
SsiI CCGC 3 cut(s) 662, 1268, 2701
SspI AATATT 2 cut(s) 717, 1542
SspMI CTAG 9 cut(s) 348, 711, 1026, 1101, 1623, 1971, 2060, 2102, 2162
StuI AGGCCT 1 cut(s) 2694
StyD4I CCNGG 6 cut(s) 465, 692, 886, 1113, 1565, 1649
StyI CCWWGG 3 cut(s) 775, 1239, 2185
TaaI ACNGT 8 cut(s) 120, 737, 762, 826, 1524, 2249, 2345, 2567
TaiI ACGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 191, 1574, 2444, 2583
TatI WGTACW 3 cut(s) 821, 929, 2345
TfiI GAWTC 8 cut(s) 146, 740, 834, 920, 2363, 2441, 2453, 2666
TseFI GTSAC 2 cut(s) 1310, 2543
TseI GCWGC 8 cut(s) 214, 232, 1109, 1342, 1547, 2234, 2310, 2703
Tsp45I GTSAC 2 cut(s) 1310, 2543
TspDTI ATGAA 9 cut(s) 32, 177, 240, 624, 1299, 1905, 2232, 2273, 2651
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 4 cut(s) 1220, 1569, 1719, 2419
XapI RAATTY 3 cut(s) 493, 1052, 1881
XbaI TCTAGA 2 cut(s) 1622, 2059
XceI RCATGY 2 cut(s) 1411, 1897
XmiI GTMKAC 1 cut(s) 1790
XmnI GAANNNNTTC 2 cut(s) 793, 1055
XspI CTAG 9 cut(s) 348, 711, 1026, 1101, 1623, 1971, 2060, 2102, 2162
Zsp2I ATGCAT 2 cut(s) 1911, 2434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.